Wall clock time and date at job start Wed Apr 1 2020 03:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30453 * 125.98209 * 2 1 4 4 N 1.39939 * 108.89003 * 179.97438 * 3 2 1 5 5 C 1.46501 * 125.74991 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47551 * 304.98085 * 5 4 3 7 7 F 1.39897 * 109.47028 * 64.99924 * 6 5 4 8 8 F 1.39904 * 109.47057 * 185.00125 * 6 5 4 9 9 C 1.34262 * 108.49562 * 359.75194 * 4 3 2 10 10 C 1.38047 * 107.41243 * 0.39383 * 9 4 3 11 11 C 1.47429 * 126.41295 * 179.87718 * 10 9 4 12 12 O 1.21603 * 120.00215 * 141.11879 * 11 10 9 13 13 N 1.34785 * 119.99733 * 321.38794 * 11 10 9 14 14 C 1.46501 * 119.99853 * 4.96819 * 13 11 10 15 15 C 1.46497 * 120.00036 * 184.96257 * 13 11 10 16 16 C 1.52995 * 109.47190 * 90.00165 * 15 13 11 17 17 C 1.53001 * 109.47377 * 179.97438 * 16 15 13 18 18 N 1.46496 * 109.47232 * 179.97438 * 17 16 15 19 19 C 1.46505 * 119.99539 * 90.00420 * 18 17 16 20 20 C 1.36928 * 120.00504 * 269.99968 * 18 17 16 21 21 H 1.08008 * 119.99795 * 23.84852 * 20 18 17 22 22 C 1.38807 * 120.00367 * 203.84397 * 20 18 17 23 23 N 1.31623 * 120.00188 * 11.14740 * 22 20 18 24 24 Si 1.86805 * 120.00254 * 191.14366 * 22 20 18 25 25 H 1.48498 * 109.46964 * 0.02562 * 24 22 20 26 26 H 1.48509 * 109.46976 * 120.00094 * 24 22 20 27 27 H 1.48499 * 109.47410 * 239.99978 * 24 22 20 28 28 H 1.09004 * 109.47366 * 270.04377 * 1 2 3 29 29 H 1.09000 * 109.47357 * 30.04230 * 1 2 3 30 30 H 1.09002 * 109.46752 * 150.04580 * 1 2 3 31 31 H 1.09005 * 109.46799 * 64.98124 * 5 4 3 32 32 H 1.09005 * 109.46875 * 184.97581 * 5 4 3 33 33 H 1.09001 * 109.46996 * 304.99783 * 6 5 4 34 34 H 1.07992 * 126.29548 * 180.23874 * 9 4 3 35 35 H 1.08996 * 109.47189 * 85.33289 * 14 13 11 36 36 H 1.08998 * 109.46708 * 205.33903 * 14 13 11 37 37 H 1.09000 * 109.46740 * 325.32925 * 14 13 11 38 38 H 1.08999 * 109.46900 * 210.00177 * 15 13 11 39 39 H 1.09002 * 109.47271 * 330.00133 * 15 13 11 40 40 H 1.09002 * 109.46973 * 300.00280 * 16 15 13 41 41 H 1.09002 * 109.47040 * 59.99826 * 16 15 13 42 42 H 1.08990 * 109.47024 * 300.00342 * 17 16 15 43 43 H 1.08998 * 109.46630 * 59.99961 * 17 16 15 44 44 H 1.09002 * 109.47161 * 87.06465 * 19 18 17 45 45 H 1.09003 * 109.46925 * 207.06563 * 19 18 17 46 46 H 1.09000 * 109.47328 * 327.06330 * 19 18 17 47 47 H 0.96993 * 120.00507 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0556 0.0000 4 7 3.6111 0.6443 0.0006 5 6 4.7786 1.5292 0.0013 6 6 4.6863 2.4966 -1.1804 7 9 3.5830 3.3394 -1.0080 8 9 5.8539 3.2644 -1.2469 9 6 3.6439 -0.6979 0.0065 10 6 2.3373 -1.1431 0.0006 11 6 1.8916 -2.5484 0.0013 12 8 0.9229 -2.8788 0.6580 13 7 2.5612 -3.4681 -0.7216 14 6 3.7936 -3.0951 -1.4203 15 6 2.0565 -4.8407 -0.8085 16 6 1.1113 -4.9617 -2.0055 17 6 0.5848 -6.3954 -2.0967 18 7 -0.3207 -6.5111 -3.2424 19 6 0.2065 -6.8817 -4.5582 20 6 -1.6598 -6.2730 -3.0837 21 1 -2.0049 -5.6499 -2.2719 22 6 -2.5736 -6.8324 -3.9662 23 7 -2.1854 -7.7600 -4.8154 24 14 -4.3545 -6.2687 -3.9485 25 1 -4.5326 -5.2235 -2.9088 26 1 -4.7100 -5.7098 -5.2777 27 1 -5.2365 -7.4244 -3.6456 28 1 -0.3634 0.0008 1.0277 29 1 -0.3634 0.8896 -0.5145 30 1 -0.3633 -0.8904 -0.5131 31 1 4.8052 2.0949 0.9327 32 1 5.6866 0.9327 -0.0875 33 1 4.5703 1.9308 -2.1049 34 1 4.5297 -1.3156 0.0120 35 1 4.6383 -3.1779 -0.7364 36 1 3.9462 -3.7621 -2.2688 37 1 3.7130 -2.0679 -1.7757 38 1 2.8930 -5.5280 -0.9351 39 1 1.5180 -5.0885 0.1062 40 1 0.2749 -4.2744 -1.8789 41 1 1.6499 -4.7140 -2.9202 42 1 1.4214 -7.0823 -2.2235 43 1 0.0464 -6.6435 -1.1820 44 1 0.2354 -7.9678 -4.6452 45 1 -0.4375 -6.4717 -5.3362 46 1 1.2139 -6.4812 -4.6719 47 1 -2.8238 -8.1506 -5.4324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280824192.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:13 Heat of formation + Delta-G solvation = -55.490132 kcal Electronic energy + Delta-G solvation = -30214.560588 eV Core-core repulsion = 25684.108186 eV Total energy + Delta-G solvation = -4530.452402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.00499 -48.02373 -42.58852 -40.39563 -37.89384 -36.66009 -35.53204 -34.17462 -32.51465 -31.70468 -30.77666 -28.46552 -28.05324 -27.83776 -26.76515 -24.67009 -23.90860 -22.74275 -21.93056 -21.29428 -20.19856 -18.81533 -18.72153 -18.49408 -18.17592 -17.48124 -17.25216 -16.90041 -16.53646 -16.41768 -15.82346 -15.74535 -15.36381 -15.30684 -14.93415 -14.62665 -14.51808 -14.44342 -14.37083 -14.30589 -14.09887 -13.65314 -13.60043 -13.37928 -13.30361 -13.18147 -12.96492 -12.90759 -12.73105 -12.53957 -12.45600 -12.22410 -12.20693 -12.07211 -11.88308 -11.80862 -11.37675 -10.92945 -10.63250 -10.43511 -9.78677 -9.55744 -8.72301 -7.85608 -5.32470 0.48966 1.07944 1.13045 1.43197 1.44418 1.55826 1.97762 2.34624 2.50212 2.58062 3.16469 3.25547 3.28900 3.53189 3.62836 3.72417 3.76712 3.93859 4.02702 4.21692 4.28942 4.33298 4.34268 4.40671 4.48687 4.59265 4.65762 4.67851 4.75872 4.80487 4.83329 4.88076 4.90514 4.97221 4.99277 5.29365 5.32389 5.38251 5.54872 5.60746 5.66787 5.70857 5.75356 6.35008 6.41881 6.54134 7.16350 7.27268 7.89397 8.31157 9.19076 Molecular weight = 344.18amu Principal moments of inertia in cm(-1) A = 0.015058 B = 0.002227 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.055847 B =12567.553812 C =13081.248265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.113 3.887 3 N -0.313 5.313 4 N -0.364 5.364 5 C 0.084 3.916 6 C 0.252 3.748 7 F -0.213 7.213 8 F -0.200 7.200 9 C 0.133 3.867 10 C -0.306 4.306 11 C 0.585 3.415 12 O -0.585 6.585 13 N -0.610 5.610 14 C 0.065 3.935 15 C 0.127 3.873 16 C -0.129 4.129 17 C 0.152 3.848 18 N -0.624 5.624 19 C 0.178 3.822 20 C -0.258 4.258 21 H 0.059 0.941 22 C -0.054 4.054 23 N -0.938 5.938 24 Si 0.965 3.035 25 H -0.273 1.273 26 H -0.287 1.287 27 H -0.288 1.288 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.116 0.884 32 H 0.183 0.817 33 H 0.133 0.867 34 H 0.238 0.762 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.063 0.937 40 H 0.021 0.979 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.034 0.966 44 H -0.003 1.003 45 H 0.025 0.975 46 H 0.030 0.970 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.580 18.616 9.002 32.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.054 4.054 3 N -0.135 5.135 4 N -0.143 5.143 5 C -0.037 4.037 6 C 0.198 3.802 7 F -0.194 7.194 8 F -0.182 7.182 9 C -0.017 4.017 10 C -0.320 4.320 11 C 0.374 3.626 12 O -0.466 6.466 13 N -0.341 5.341 14 C -0.077 4.077 15 C 0.003 3.997 16 C -0.170 4.170 17 C 0.025 3.975 18 N -0.347 5.347 19 C 0.033 3.967 20 C -0.388 4.388 21 H 0.076 0.924 22 C -0.248 4.248 23 N -0.586 5.586 24 Si 0.793 3.207 25 H -0.198 1.198 26 H -0.214 1.214 27 H -0.215 1.215 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.134 0.866 32 H 0.201 0.799 33 H 0.150 0.850 34 H 0.254 0.746 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.129 0.871 39 H 0.081 0.919 40 H 0.040 0.960 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.053 0.947 44 H 0.015 0.985 45 H 0.044 0.956 46 H 0.049 0.951 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 24.189 19.771 9.215 32.572 hybrid contribution -1.625 -0.629 -0.250 1.760 sum 22.564 19.143 8.965 30.919 Atomic orbital electron populations 1.20185 0.86367 1.03035 1.03580 1.22581 0.97481 0.89512 0.95866 1.77326 0.87095 1.22120 1.26918 1.48280 1.05279 1.05165 1.55584 1.23153 0.86685 0.93727 1.00174 1.22285 0.71041 0.84677 1.02245 1.93039 1.54966 1.74484 1.96947 1.93023 1.49298 1.78244 1.97606 1.23826 0.98959 0.84285 0.94654 1.20196 0.94032 0.93158 1.24650 1.17702 0.81914 0.84627 0.78332 1.90767 1.29797 1.81496 1.44497 1.47826 1.26700 1.10070 1.49497 1.22318 0.84783 1.02539 0.98039 1.21390 0.98247 0.82205 0.97810 1.22276 0.97924 0.98655 0.98157 1.20806 0.92832 0.94402 0.89434 1.44171 1.03879 1.81298 1.05360 1.20526 0.93783 0.96080 0.86341 1.19448 0.83690 1.23149 1.12551 0.92367 1.25756 1.01725 0.97413 0.99943 1.70211 1.34600 1.28757 1.25000 0.85232 0.80510 0.77554 0.77367 1.19750 1.21384 1.21476 0.89846 0.89715 0.91869 0.86577 0.79918 0.84982 0.74584 0.88864 0.89795 0.90373 0.87098 0.91877 0.95981 0.92266 0.92019 0.94744 0.98468 0.95621 0.95145 0.94166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.89 9.93 71.24 0.71 -1.19 16 2 C 0.11 2.87 7.26 43.51 0.32 3.19 16 3 N -0.31 -7.06 11.63 -46.68 -0.54 -7.60 16 4 N -0.36 -4.64 3.65 -346.29 -1.26 -5.91 16 5 C 0.08 0.34 6.71 86.38 0.58 0.92 16 6 C 0.25 2.11 5.51 71.98 0.40 2.51 16 7 F -0.21 -3.86 16.55 44.97 0.74 -3.12 16 8 F -0.20 -1.96 17.34 44.97 0.78 -1.18 16 9 C 0.13 1.50 9.17 84.28 0.77 2.27 16 10 C -0.31 -6.86 5.35 -20.15 -0.11 -6.96 16 11 C 0.58 16.70 7.35 86.66 0.64 17.33 16 12 O -0.59 -22.62 15.96 -4.04 -0.06 -22.68 16 13 N -0.61 -13.74 2.87 -850.67 -2.44 -16.18 16 14 C 0.06 0.69 9.05 127.77 1.16 1.84 16 15 C 0.13 3.33 5.43 86.38 0.47 3.80 16 16 C -0.13 -4.51 5.86 30.59 0.18 -4.33 16 17 C 0.15 6.22 5.68 86.38 0.49 6.72 16 18 N -0.62 -32.55 2.92 -726.95 -2.12 -34.68 16 19 C 0.18 8.92 8.99 127.77 1.15 10.06 16 20 C -0.26 -15.00 9.65 84.03 0.81 -14.19 16 21 H 0.06 3.43 7.85 -2.91 -0.02 3.40 16 22 C -0.05 -3.14 5.08 84.86 0.43 -2.71 16 23 N -0.94 -57.06 10.71 21.65 0.23 -56.83 16 24 Si 0.97 47.29 29.57 68.60 2.03 49.32 16 25 H -0.27 -13.02 7.11 99.48 0.71 -12.32 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 27 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 28 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.06 1.89 7.75 -2.39 -0.02 1.88 16 31 H 0.12 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.18 -1.17 8.06 -2.38 -0.02 -1.19 16 33 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.24 0.05 6.37 -2.91 -0.02 0.03 16 35 H 0.09 0.28 7.38 -2.39 -0.02 0.26 16 36 H 0.08 0.84 8.04 -2.39 -0.02 0.82 16 37 H 0.08 0.71 5.87 -2.39 -0.01 0.70 16 38 H 0.11 2.09 8.07 -2.39 -0.02 2.08 16 39 H 0.06 1.95 7.36 -2.39 -0.02 1.94 16 40 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.06 2.19 8.07 -2.39 -0.02 2.17 16 43 H 0.03 1.49 8.04 -2.39 -0.02 1.47 16 44 H 0.00 -0.16 7.78 -2.39 -0.02 -0.18 16 45 H 0.02 1.40 6.79 -2.39 -0.02 1.38 16 46 H 0.03 1.26 8.09 -2.39 -0.02 1.24 16 47 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -86.85 396.23 6.31 -80.54 By element: Atomic # 1 Polarization: -1.92 SS G_CDS: 0.97 Total: -0.94 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 7.99 Total: 19.26 kcal Atomic # 7 Polarization: -115.06 SS G_CDS: -6.14 Total: -121.20 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.06 Total: -22.68 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 1.52 Total: -4.30 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -86.85 6.31 -80.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280824192.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.053 kcal (2) G-P(sol) polarization free energy of solvation -86.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds