Wall clock time and date at job start Wed Apr 1 2020 03:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39870 * 125.89911 * 2 1 4 4 C 1.35318 * 107.92236 * 179.71882 * 3 2 1 5 5 C 1.50693 * 126.12978 * 180.26406 * 4 3 2 6 6 F 1.39901 * 109.47353 * 30.18921 * 5 4 3 7 7 F 1.39905 * 109.47149 * 150.18595 * 5 4 3 8 8 N 1.34948 * 107.74290 * 0.42279 * 4 3 2 9 9 C 1.46506 * 126.03813 * 179.84379 * 8 4 3 10 10 C 1.50702 * 109.46851 * 269.71654 * 9 8 4 11 11 O 1.21281 * 119.99993 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00043 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00192 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.47286 * 324.99496 * 13 12 10 15 15 C 1.53004 * 109.47127 * 84.99830 * 13 12 10 16 16 C 1.52999 * 109.47100 * 204.99245 * 13 12 10 17 17 C 1.52999 * 109.47086 * 65.00089 * 16 13 12 18 18 C 1.52994 * 109.47558 * 179.97438 * 17 16 13 19 19 N 1.46499 * 109.47322 * 180.02562 * 18 17 16 20 20 C 1.36942 * 119.99719 * 180.02562 * 19 18 17 21 21 H 1.07995 * 120.00200 * 359.97438 * 20 19 18 22 22 C 1.38817 * 119.99646 * 179.97438 * 20 19 18 23 23 N 1.31619 * 120.00280 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99836 * 179.97438 * 22 20 19 25 25 H 1.48509 * 109.46976 * 90.00538 * 24 22 20 26 26 H 1.48503 * 109.47426 * 210.00161 * 24 22 20 27 27 H 1.48497 * 109.47236 * 330.00428 * 24 22 20 28 28 N 1.30841 * 125.90347 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47164 * 270.00197 * 1 2 3 30 30 H 1.09002 * 109.46768 * 30.00022 * 1 2 3 31 31 H 1.08999 * 109.47145 * 149.99730 * 1 2 3 32 32 H 1.08000 * 126.04175 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.47384 * 270.18563 * 5 4 3 34 34 H 1.08994 * 109.46947 * 29.71075 * 9 8 4 35 35 H 1.08997 * 109.47271 * 149.71592 * 9 8 4 36 36 H 0.97000 * 119.99842 * 359.97438 * 12 10 9 37 37 H 1.08999 * 109.47062 * 180.02562 * 15 13 12 38 38 H 1.09002 * 109.47022 * 299.99515 * 15 13 12 39 39 H 1.08996 * 109.47310 * 59.99681 * 15 13 12 40 40 H 1.09004 * 109.47254 * 184.99456 * 16 13 12 41 41 H 1.09002 * 109.47765 * 305.00111 * 16 13 12 42 42 H 1.08995 * 109.47102 * 300.00029 * 17 16 13 43 43 H 1.09007 * 109.47245 * 59.99551 * 17 16 13 44 44 H 1.09005 * 109.46908 * 300.00086 * 18 17 16 45 45 H 1.08996 * 109.47528 * 59.99548 * 18 17 16 46 46 H 0.96998 * 120.00212 * 359.97438 * 19 18 17 47 47 H 0.96992 * 120.00172 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7154 0.0063 5 6 4.8350 1.5989 0.0142 6 9 4.5408 2.7949 0.6777 7 9 5.8802 0.9442 0.6747 8 7 3.6088 -0.6341 0.0007 9 6 4.7899 -1.5008 0.0013 10 6 5.1957 -1.7977 -1.4194 11 8 4.5606 -1.3317 -2.3415 12 7 6.2638 -2.5820 -1.6652 13 6 6.6580 -2.8711 -3.0462 14 1 5.7673 -2.9482 -3.6697 15 6 7.5502 -1.7432 -3.5687 16 6 7.4279 -4.1925 -3.0908 17 6 6.4980 -5.3384 -2.6870 18 6 7.2675 -6.6599 -2.7322 19 7 6.3769 -7.7572 -2.3461 20 6 6.8485 -9.0424 -2.3129 21 1 7.8768 -9.2471 -2.5717 22 6 6.0048 -10.0820 -1.9465 23 7 4.7514 -9.8326 -1.6316 24 14 6.6478 -11.8352 -1.9018 25 1 7.1896 -12.1295 -0.5508 26 1 5.5405 -12.7766 -2.2068 27 1 7.7245 -11.9935 -2.9122 28 7 2.2743 -1.0598 0.0005 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8899 -0.5139 32 1 1.9923 2.1598 -0.0004 33 1 5.1329 1.8162 -1.0115 34 1 5.6090 -0.9983 0.5156 35 1 4.5561 -2.4333 0.5148 36 1 6.7716 -2.9550 -0.9277 37 1 7.8431 -1.9581 -4.5964 38 1 7.0018 -0.8018 -3.5369 39 1 8.4409 -1.6661 -2.9452 40 1 7.7975 -4.3637 -4.1019 41 1 8.2692 -4.1465 -2.3993 42 1 6.1283 -5.1672 -1.6761 43 1 5.6566 -5.3845 -3.3785 44 1 7.6369 -6.8309 -3.7434 45 1 8.1091 -6.6142 -2.0411 46 1 5.4534 -7.5732 -2.1134 47 1 4.1619 -10.5589 -1.3753 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283175734.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:54 Heat of formation + Delta-G solvation = -83.331321 kcal Electronic energy + Delta-G solvation = -29973.216894 eV Core-core repulsion = 25441.557207 eV Total energy + Delta-G solvation = -4531.659686 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.26924 -48.29421 -42.49699 -40.88558 -38.05419 -36.56277 -35.12482 -34.24227 -32.92456 -32.34981 -31.08386 -30.36548 -27.59476 -27.27509 -26.91901 -24.82925 -22.82600 -22.27784 -21.81785 -21.64139 -21.02319 -19.16337 -18.93528 -18.62423 -18.43502 -18.19452 -17.25487 -16.67846 -16.65667 -16.53528 -15.99723 -15.79263 -15.45617 -15.26473 -15.19903 -14.91733 -14.76364 -14.54404 -14.52294 -14.39214 -13.98509 -13.88832 -13.55228 -13.46601 -13.39098 -13.22947 -13.06302 -13.03243 -12.78563 -12.42524 -12.40183 -12.26676 -12.10179 -11.88679 -11.74987 -11.70575 -11.52795 -11.26675 -10.95055 -10.40721 -10.19258 -9.73340 -9.02821 -7.97644 -5.27289 0.42580 1.07316 1.38100 1.45564 1.47848 1.56421 1.58824 2.11206 2.39962 2.54225 2.93033 3.27612 3.36119 3.45113 3.54101 3.67048 3.75870 3.93790 3.97650 4.02513 4.08382 4.22499 4.27023 4.37797 4.45608 4.56013 4.65497 4.69051 4.81004 4.81061 4.84417 4.90016 4.94708 4.97663 5.07446 5.09796 5.29487 5.32920 5.41052 5.48581 5.49756 5.57033 5.65465 6.24820 6.39623 6.51152 7.06206 7.30147 8.07571 8.29035 9.26202 Molecular weight = 344.18amu Principal moments of inertia in cm(-1) A = 0.013195 B = 0.002150 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.483713 B =13017.585388 C =14346.983582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.062 3.938 3 C -0.229 4.229 4 C -0.001 4.001 5 C 0.349 3.651 6 F -0.185 7.185 7 F -0.197 7.197 8 N -0.345 5.345 9 C 0.094 3.906 10 C 0.500 3.500 11 O -0.570 6.570 12 N -0.704 5.704 13 C 0.145 3.855 14 H 0.059 0.941 15 C -0.153 4.153 16 C -0.109 4.109 17 C -0.114 4.114 18 C 0.150 3.850 19 N -0.752 5.752 20 C -0.247 4.247 21 H 0.078 0.922 22 C -0.080 4.080 23 N -0.973 5.973 24 Si 0.976 3.024 25 H -0.284 1.284 26 H -0.296 1.296 27 H -0.268 1.268 28 N -0.310 5.310 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.180 0.820 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.139 0.861 36 H 0.417 0.583 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.059 0.941 43 H 0.041 0.959 44 H 0.019 0.981 45 H 0.028 0.972 46 H 0.371 0.629 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.204 29.740 3.774 30.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.104 4.104 3 C -0.258 4.258 4 C -0.129 4.129 5 C 0.294 3.706 6 F -0.166 7.166 7 F -0.178 7.178 8 N -0.127 5.127 9 C -0.031 4.031 10 C 0.285 3.715 11 O -0.449 6.449 12 N -0.357 5.357 13 C 0.041 3.959 14 H 0.078 0.922 15 C -0.211 4.211 16 C -0.147 4.147 17 C -0.152 4.152 18 C 0.024 3.976 19 N -0.394 5.394 20 C -0.378 4.378 21 H 0.096 0.904 22 C -0.272 4.272 23 N -0.623 5.623 24 Si 0.805 3.195 25 H -0.211 1.211 26 H -0.223 1.223 27 H -0.192 1.192 28 N -0.133 5.133 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.086 0.914 32 H 0.198 0.802 33 H 0.178 0.822 34 H 0.181 0.819 35 H 0.157 0.843 36 H 0.255 0.745 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.037 0.963 45 H 0.046 0.954 46 H 0.202 0.798 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.107 28.586 3.104 28.831 hybrid contribution -0.191 -0.675 0.497 0.860 sum 1.916 27.910 3.601 28.207 Atomic orbital electron populations 1.20343 0.83949 1.04378 1.04290 1.23029 0.98795 0.90156 0.98381 1.21480 0.89691 1.01337 1.13337 1.21873 0.98177 0.85745 1.07115 1.19949 0.79644 0.76398 0.94580 1.93044 1.93609 1.46221 1.83761 1.92903 1.59543 1.81213 1.84183 1.47890 1.05046 1.03288 1.56499 1.22101 0.86690 0.98749 0.95533 1.20987 0.80361 0.78859 0.91328 1.90739 1.54160 1.53029 1.46930 1.45957 1.29882 1.49899 1.09957 1.20989 0.97712 0.95153 0.82071 0.92238 1.22087 0.99587 0.97046 1.02404 1.21760 0.97955 0.90745 1.04231 1.21603 0.98364 0.94040 1.01175 1.20865 0.92971 0.86974 0.96827 1.42675 1.11228 1.03341 1.82175 1.19683 0.95841 0.85303 1.37016 0.90395 1.25650 0.96164 1.02373 1.03009 1.69830 1.06032 1.32196 1.54281 0.85096 0.76962 0.79462 0.77983 1.21129 1.22286 1.19234 1.77417 0.86725 1.24168 1.24951 0.88862 0.87902 0.91429 0.80248 0.82226 0.81872 0.84349 0.74548 0.90443 0.93625 0.90378 0.89126 0.88834 0.92269 0.94003 0.96318 0.95367 0.79789 0.94004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.45 71.24 0.74 -0.32 16 2 C 0.06 1.42 7.22 43.10 0.31 1.73 16 3 C -0.23 -4.46 10.32 21.99 0.23 -4.24 16 4 C 0.00 -0.03 6.67 41.40 0.28 0.25 16 5 C 0.35 4.90 5.73 71.23 0.41 5.31 16 6 F -0.19 -2.76 17.05 44.97 0.77 -1.99 16 7 F -0.20 -2.83 14.57 44.97 0.66 -2.17 16 8 N -0.35 -8.32 3.10 -338.40 -1.05 -9.36 16 9 C 0.09 1.76 6.65 85.63 0.57 2.33 16 10 C 0.50 11.48 7.86 87.66 0.69 12.17 16 11 O -0.57 -18.15 16.09 -3.03 -0.05 -18.20 16 12 N -0.70 -12.82 4.53 -442.55 -2.00 -14.82 16 13 C 0.15 2.89 2.57 44.99 0.12 3.01 16 14 H 0.06 1.58 7.58 -2.39 -0.02 1.56 16 15 C -0.15 -2.39 9.48 71.98 0.68 -1.71 16 16 C -0.11 -2.16 4.75 30.59 0.15 -2.02 16 17 C -0.11 -3.42 5.21 30.59 0.16 -3.26 16 18 C 0.15 5.77 6.26 86.38 0.54 6.31 16 19 N -0.75 -38.97 5.60 -343.46 -1.92 -40.89 16 20 C -0.25 -13.97 9.99 84.03 0.84 -13.13 16 21 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 22 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 23 N -0.97 -60.91 13.06 21.65 0.28 -60.62 16 24 Si 0.98 46.49 29.55 68.60 2.03 48.52 16 25 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 26 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 28 N -0.31 -8.84 12.57 -47.38 -0.60 -9.44 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.16 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.16 2.04 5.55 -2.39 -0.01 2.03 16 35 H 0.14 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.42 5.28 8.60 -92.71 -0.80 4.48 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.06 1.79 7.75 -2.39 -0.02 1.77 16 43 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 45 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.37 20.71 7.67 -92.71 -0.71 19.99 16 47 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -80.97 403.31 3.78 -77.19 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: -0.51 Total: 29.58 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 6.18 Total: 2.21 kcal Atomic # 7 Polarization: -129.85 SS G_CDS: -5.29 Total: -135.14 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.05 Total: -18.20 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 1.42 Total: -4.17 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -80.97 3.78 -77.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283175734.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.137 kcal (2) G-P(sol) polarization free energy of solvation -80.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds