Wall clock time and date at job start Wed Apr 1 2020 03:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39874 * 125.89850 * 2 1 4 4 C 1.35310 * 107.92117 * 179.71715 * 3 2 1 5 5 C 1.50701 * 126.12781 * 180.26413 * 4 3 2 6 6 F 1.39901 * 109.46840 * 120.19003 * 5 4 3 7 7 F 1.39899 * 109.47223 * 240.18828 * 5 4 3 8 8 N 1.34954 * 107.74740 * 0.42606 * 4 3 2 9 9 C 1.46497 * 126.03903 * 179.83801 * 8 4 3 10 10 C 1.50694 * 109.47115 * 269.71456 * 9 8 4 11 11 O 1.21283 * 120.00363 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99988 * 180.02562 * 10 9 8 13 13 C 1.46493 * 119.99864 * 179.72721 * 12 10 9 14 14 H 1.08999 * 109.47597 * 34.99540 * 13 12 10 15 15 C 1.53000 * 109.47099 * 274.99655 * 13 12 10 16 16 C 1.52996 * 109.47222 * 155.00033 * 13 12 10 17 17 C 1.53008 * 109.47146 * 294.99811 * 16 13 12 18 18 C 1.52996 * 109.47146 * 179.97438 * 17 16 13 19 19 N 1.46500 * 109.46990 * 180.02562 * 18 17 16 20 20 C 1.36939 * 120.00240 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99821 * 0.02562 * 20 19 18 22 22 C 1.38813 * 120.00353 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99563 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00058 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47246 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47135 * 120.00007 * 24 22 20 27 27 H 1.48498 * 109.47097 * 239.99770 * 24 22 20 28 28 N 1.30832 * 125.90173 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47226 * 269.99550 * 1 2 3 30 30 H 1.09004 * 109.47451 * 30.00147 * 1 2 3 31 31 H 1.09004 * 109.46873 * 149.99612 * 1 2 3 32 32 H 1.08006 * 126.03729 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.47444 * 0.18941 * 5 4 3 34 34 H 1.08998 * 109.46734 * 149.71573 * 9 8 4 35 35 H 1.09002 * 109.47081 * 29.71344 * 9 8 4 36 36 H 0.97000 * 119.99339 * 0.02562 * 12 10 9 37 37 H 1.09008 * 109.47230 * 60.00254 * 15 13 12 38 38 H 1.09003 * 109.47308 * 180.02562 * 15 13 12 39 39 H 1.09005 * 109.47224 * 300.00512 * 15 13 12 40 40 H 1.09004 * 109.47220 * 54.99381 * 16 13 12 41 41 H 1.09006 * 109.47725 * 174.99836 * 16 13 12 42 42 H 1.09004 * 109.46710 * 299.99883 * 17 16 13 43 43 H 1.08993 * 109.46846 * 59.99635 * 17 16 13 44 44 H 1.09004 * 109.47220 * 299.99570 * 18 17 16 45 45 H 1.08993 * 109.47546 * 60.00064 * 18 17 16 46 46 H 0.97002 * 120.00333 * 359.97438 * 19 18 17 47 47 H 0.97001 * 119.99507 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7154 0.0064 5 6 4.8349 1.5990 0.0143 6 9 5.5954 1.3334 1.1582 7 9 5.6034 1.3429 -1.1264 8 7 3.6088 -0.6341 0.0007 9 6 4.7899 -1.5007 0.0011 10 6 5.1957 -1.7976 -1.4195 11 8 4.5605 -1.3316 -2.3416 12 7 6.2639 -2.5819 -1.6653 13 6 6.6547 -2.8753 -3.0463 14 1 6.4594 -2.0046 -3.6722 15 6 5.8456 -4.0666 -3.5631 16 6 8.1462 -3.2130 -3.0935 17 6 8.9610 -1.9806 -2.6955 18 6 10.4525 -2.3185 -2.7420 19 7 11.2326 -1.1387 -2.3603 20 6 12.6001 -1.2028 -2.3289 21 1 13.1036 -2.1230 -2.5859 22 6 13.3393 -0.0847 -1.9678 23 7 12.7257 1.0372 -1.6560 24 14 15.2047 -0.1724 -1.9242 25 1 15.6454 -1.5356 -2.3150 26 1 15.7692 0.8208 -2.8730 27 1 15.6824 0.1280 -0.5507 28 7 2.2742 -1.0598 0.0005 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 1.9922 2.1599 -0.0004 33 1 4.5268 2.6445 0.0176 34 1 4.5561 -2.4332 0.5147 35 1 5.6091 -0.9981 0.5155 36 1 6.7712 -2.9554 -0.9278 37 1 4.7829 -3.8261 -3.5296 38 1 6.1367 -4.2853 -4.5906 39 1 6.0409 -4.9375 -2.9373 40 1 8.3566 -4.0271 -2.3998 41 1 8.4182 -3.5175 -4.1042 42 1 8.7507 -1.1665 -3.3891 43 1 8.6891 -1.6763 -1.6848 44 1 10.6625 -3.1325 -2.0481 45 1 10.7247 -2.6231 -3.7525 46 1 10.7804 -0.3120 -2.1298 47 1 13.2423 1.8184 -1.4033 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283175735.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:59 Heat of formation + Delta-G solvation = -60.298606 kcal Electronic energy + Delta-G solvation = -30474.165921 eV Core-core repulsion = 25943.505008 eV Total energy + Delta-G solvation = -4530.660913 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.30835 -47.28644 -41.68826 -39.88920 -36.87266 -34.87442 -34.30059 -32.69702 -31.91211 -31.23221 -29.90871 -29.32062 -26.66470 -26.25967 -25.61814 -23.09935 -21.78167 -21.10279 -20.81362 -20.67255 -20.05348 -17.88527 -17.77464 -17.48126 -17.39555 -17.00865 -16.33457 -15.92888 -15.42877 -15.12415 -14.68137 -14.46952 -14.21222 -14.12302 -13.93965 -13.71263 -13.69685 -13.62436 -13.51055 -13.16498 -13.03471 -12.89268 -12.86819 -12.64324 -12.36145 -12.23876 -12.11670 -11.70783 -11.32752 -11.18824 -10.89042 -10.87064 -10.81491 -10.48323 -10.42151 -10.24404 -9.98305 -9.69000 -9.61588 -9.21045 -8.94407 -8.86418 -6.90485 -5.75129 -3.03894 1.22516 1.86640 2.34168 2.37906 2.97959 3.19126 3.43607 3.48866 3.51438 3.78320 4.03816 4.24993 4.38345 4.57133 4.61425 4.63407 4.68478 4.75691 4.84817 5.01405 5.12171 5.15950 5.28501 5.34955 5.39877 5.50570 5.52935 5.58211 5.60425 5.68392 5.75911 5.92739 6.04013 6.08867 6.19153 6.26603 6.34830 6.36066 6.40825 6.43085 6.86601 6.89817 7.27525 7.30025 7.71107 7.99206 8.43874 9.54647 10.13786 10.48031 11.47880 Molecular weight = 344.18amu Principal moments of inertia in cm(-1) A = 0.013274 B = 0.002510 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.900750 B =11152.144831 C =12854.720400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.071 3.929 3 C -0.224 4.224 4 C 0.016 3.984 5 C 0.334 3.666 6 F -0.194 7.194 7 F -0.184 7.184 8 N -0.332 5.332 9 C 0.105 3.895 10 C 0.501 3.499 11 O -0.518 6.518 12 N -0.716 5.716 13 C 0.143 3.857 14 H 0.089 0.911 15 C -0.162 4.162 16 C -0.122 4.122 17 C -0.125 4.125 18 C 0.153 3.847 19 N -0.735 5.735 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.016 4.016 23 N -0.933 5.933 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 N -0.265 5.265 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.157 0.843 33 H 0.140 0.860 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.402 0.598 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.016 0.984 45 H 0.017 0.983 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.417 -3.887 5.004 26.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.095 4.095 3 C -0.254 4.254 4 C -0.112 4.112 5 C 0.279 3.721 6 F -0.175 7.175 7 F -0.165 7.165 8 N -0.113 5.113 9 C -0.021 4.021 10 C 0.285 3.715 11 O -0.392 6.392 12 N -0.369 5.369 13 C 0.039 3.961 14 H 0.107 0.893 15 C -0.220 4.220 16 C -0.161 4.161 17 C -0.163 4.163 18 C 0.026 3.974 19 N -0.379 5.379 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.582 5.582 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 N -0.088 5.088 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.175 0.825 33 H 0.157 0.843 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.237 0.763 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.034 0.966 45 H 0.035 0.965 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -25.493 -4.993 4.296 26.331 hybrid contribution 1.477 0.886 0.467 1.784 sum -24.017 -4.107 4.762 24.826 Atomic orbital electron populations 1.20193 0.86012 1.03651 1.03100 1.22348 0.97206 0.90266 0.99692 1.21121 0.89815 1.00522 1.13927 1.21511 0.96949 0.85662 1.07063 1.20053 0.80933 0.99126 0.72016 1.93048 1.77835 1.95701 1.50925 1.93134 1.76972 1.95818 1.50543 1.47762 1.05001 1.03029 1.55555 1.21668 0.85969 0.97552 0.96864 1.20524 0.81097 0.79091 0.90834 1.90764 1.52562 1.50585 1.45318 1.45982 1.30318 1.50993 1.09588 1.21069 0.94304 0.98619 0.82063 0.89261 1.22173 1.00589 0.97839 1.01423 1.21857 0.92145 0.99049 1.03026 1.21731 0.95941 0.96989 1.01664 1.20642 0.88841 0.91029 0.96937 1.42393 1.03356 1.09964 1.82154 1.19286 0.82769 0.96689 1.38264 0.91171 1.24763 0.97998 0.95915 1.02522 1.69679 1.34119 1.01546 1.52843 0.86111 0.85675 0.77185 0.77199 1.20574 1.21861 1.21863 1.77365 0.85591 1.22624 1.23181 0.90318 0.90148 0.90712 0.82505 0.84277 0.85297 0.85587 0.76327 0.92412 0.91423 0.92446 0.91334 0.90161 0.91930 0.92091 0.96584 0.96514 0.78317 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.45 36.00 0.38 -0.09 16 2 C 0.07 0.75 7.22 -82.41 -0.59 0.15 16 3 C -0.22 -2.18 10.63 -40.01 -0.43 -2.61 16 4 C 0.02 0.18 6.37 -82.26 -0.52 -0.34 16 5 C 0.33 3.42 5.30 36.01 0.19 3.61 16 6 F -0.19 -2.18 16.39 2.25 0.04 -2.14 16 7 F -0.18 -2.55 17.30 2.25 0.04 -2.51 16 8 N -0.33 -4.13 3.10 -58.32 -0.18 -4.31 16 9 C 0.11 1.10 6.71 -5.20 -0.03 1.06 16 10 C 0.50 6.41 7.86 -10.98 -0.09 6.33 16 11 O -0.52 -8.76 16.09 5.56 0.09 -8.68 16 12 N -0.72 -7.71 4.53 -53.81 -0.24 -7.95 16 13 C 0.14 1.66 2.58 -67.94 -0.18 1.48 16 14 H 0.09 1.25 7.57 -51.93 -0.39 0.86 16 15 C -0.16 -1.64 9.48 37.16 0.35 -1.29 16 16 C -0.12 -1.43 4.76 -26.73 -0.13 -1.56 16 17 C -0.13 -1.99 5.22 -26.73 -0.14 -2.13 16 18 C 0.15 3.08 6.26 -4.04 -0.03 3.05 16 19 N -0.73 -19.11 5.60 -59.91 -0.34 -19.44 16 20 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 21 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 22 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 23 N -0.93 -28.76 13.06 55.49 0.72 -28.03 16 24 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 28 N -0.26 -3.43 12.57 33.67 0.42 -3.01 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.16 0.99 8.06 -52.48 -0.42 0.56 16 33 H 0.14 0.84 8.11 -51.93 -0.42 0.42 16 34 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.13 1.16 6.96 -51.93 -0.36 0.80 16 36 H 0.40 3.33 8.61 -40.82 -0.35 2.98 16 37 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.06 0.97 7.75 -51.93 -0.40 0.57 16 44 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.38 10.53 7.67 -40.82 -0.31 10.22 16 47 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 406.39 15.07 6.12 6.12 Total: -1.00 -37.73 406.39 -7.09 -44.81 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -7.28 Total: 7.34 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -1.46 Total: 0.13 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: 0.39 Total: -62.74 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.68 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.08 Total: -4.65 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -37.73 -7.09 -44.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283175735.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.484 kcal (2) G-P(sol) polarization free energy of solvation -37.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds