Wall clock time and date at job start Wed Apr 1 2020 03:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39874 * 125.89850 * 2 1 4 4 C 1.35310 * 107.92117 * 179.71715 * 3 2 1 5 5 C 1.50701 * 126.12781 * 180.26413 * 4 3 2 6 6 F 1.39901 * 109.46840 * 120.19003 * 5 4 3 7 7 F 1.39899 * 109.47223 * 240.18828 * 5 4 3 8 8 N 1.34954 * 107.74740 * 0.42606 * 4 3 2 9 9 C 1.46497 * 126.03903 * 179.83801 * 8 4 3 10 10 C 1.50694 * 109.47115 * 269.71456 * 9 8 4 11 11 O 1.21283 * 120.00363 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99988 * 180.02562 * 10 9 8 13 13 C 1.46493 * 119.99864 * 179.72721 * 12 10 9 14 14 H 1.08999 * 109.47597 * 34.99540 * 13 12 10 15 15 C 1.53000 * 109.47099 * 274.99655 * 13 12 10 16 16 C 1.52996 * 109.47222 * 155.00033 * 13 12 10 17 17 C 1.53008 * 109.47146 * 294.99811 * 16 13 12 18 18 C 1.52996 * 109.47146 * 179.97438 * 17 16 13 19 19 N 1.46500 * 109.46990 * 180.02562 * 18 17 16 20 20 C 1.36939 * 120.00240 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99821 * 0.02562 * 20 19 18 22 22 C 1.38813 * 120.00353 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99563 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00058 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47246 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47135 * 120.00007 * 24 22 20 27 27 H 1.48498 * 109.47097 * 239.99770 * 24 22 20 28 28 N 1.30832 * 125.90173 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47226 * 269.99550 * 1 2 3 30 30 H 1.09004 * 109.47451 * 30.00147 * 1 2 3 31 31 H 1.09004 * 109.46873 * 149.99612 * 1 2 3 32 32 H 1.08006 * 126.03729 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.47444 * 0.18941 * 5 4 3 34 34 H 1.08998 * 109.46734 * 149.71573 * 9 8 4 35 35 H 1.09002 * 109.47081 * 29.71344 * 9 8 4 36 36 H 0.97000 * 119.99339 * 0.02562 * 12 10 9 37 37 H 1.09008 * 109.47230 * 60.00254 * 15 13 12 38 38 H 1.09003 * 109.47308 * 180.02562 * 15 13 12 39 39 H 1.09005 * 109.47224 * 300.00512 * 15 13 12 40 40 H 1.09004 * 109.47220 * 54.99381 * 16 13 12 41 41 H 1.09006 * 109.47725 * 174.99836 * 16 13 12 42 42 H 1.09004 * 109.46710 * 299.99883 * 17 16 13 43 43 H 1.08993 * 109.46846 * 59.99635 * 17 16 13 44 44 H 1.09004 * 109.47220 * 299.99570 * 18 17 16 45 45 H 1.08993 * 109.47546 * 60.00064 * 18 17 16 46 46 H 0.97002 * 120.00333 * 359.97438 * 19 18 17 47 47 H 0.97001 * 119.99507 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7154 0.0064 5 6 4.8349 1.5990 0.0143 6 9 5.5954 1.3334 1.1582 7 9 5.6034 1.3429 -1.1264 8 7 3.6088 -0.6341 0.0007 9 6 4.7899 -1.5007 0.0011 10 6 5.1957 -1.7976 -1.4195 11 8 4.5605 -1.3316 -2.3416 12 7 6.2639 -2.5819 -1.6653 13 6 6.6547 -2.8753 -3.0463 14 1 6.4594 -2.0046 -3.6722 15 6 5.8456 -4.0666 -3.5631 16 6 8.1462 -3.2130 -3.0935 17 6 8.9610 -1.9806 -2.6955 18 6 10.4525 -2.3185 -2.7420 19 7 11.2326 -1.1387 -2.3603 20 6 12.6001 -1.2028 -2.3289 21 1 13.1036 -2.1230 -2.5859 22 6 13.3393 -0.0847 -1.9678 23 7 12.7257 1.0372 -1.6560 24 14 15.2047 -0.1724 -1.9242 25 1 15.6454 -1.5356 -2.3150 26 1 15.7692 0.8208 -2.8730 27 1 15.6824 0.1280 -0.5507 28 7 2.2742 -1.0598 0.0005 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 1.9922 2.1599 -0.0004 33 1 4.5268 2.6445 0.0176 34 1 4.5561 -2.4332 0.5147 35 1 5.6091 -0.9981 0.5155 36 1 6.7712 -2.9554 -0.9278 37 1 4.7829 -3.8261 -3.5296 38 1 6.1367 -4.2853 -4.5906 39 1 6.0409 -4.9375 -2.9373 40 1 8.3566 -4.0271 -2.3998 41 1 8.4182 -3.5175 -4.1042 42 1 8.7507 -1.1665 -3.3891 43 1 8.6891 -1.6763 -1.6848 44 1 10.6625 -3.1325 -2.0481 45 1 10.7247 -2.6231 -3.7525 46 1 10.7804 -0.3120 -2.1298 47 1 13.2423 1.8184 -1.4033 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283175735.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:58 Heat of formation + Delta-G solvation = -86.468166 kcal Electronic energy + Delta-G solvation = -30475.300718 eV Core-core repulsion = 25943.505008 eV Total energy + Delta-G solvation = -4531.795710 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.176 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.18597 -48.19134 -42.47824 -40.88199 -38.05774 -36.56161 -35.10867 -34.23750 -32.93756 -32.42510 -31.09487 -30.35902 -27.43414 -27.25493 -26.97750 -24.83421 -22.86477 -22.29217 -21.89038 -21.64641 -20.86196 -19.14984 -18.77164 -18.62632 -18.33400 -18.25412 -17.30582 -16.77855 -16.66867 -16.37995 -15.98870 -15.75157 -15.43848 -15.23756 -15.09187 -14.95935 -14.70378 -14.54823 -14.45955 -14.39930 -14.05851 -13.76147 -13.52093 -13.46702 -13.39110 -13.27028 -13.15470 -13.05552 -12.81592 -12.44729 -12.42297 -12.24997 -12.07191 -11.88988 -11.75570 -11.67149 -11.53506 -11.26388 -10.95638 -10.44930 -10.19919 -9.72998 -9.01862 -7.96712 -5.26304 0.41219 1.11313 1.40162 1.46188 1.47541 1.57722 1.60974 2.10151 2.40973 2.54778 3.05344 3.32032 3.36946 3.47373 3.58417 3.65681 3.82627 3.90831 3.93652 3.95123 4.07128 4.21395 4.25806 4.35824 4.46898 4.55016 4.63513 4.70229 4.78325 4.83685 4.85475 4.88055 4.95105 4.98153 5.07846 5.09850 5.25457 5.32534 5.40928 5.48958 5.49399 5.59736 5.64015 6.25860 6.38804 6.51508 7.07060 7.31082 8.08112 8.30083 9.27308 Molecular weight = 344.18amu Principal moments of inertia in cm(-1) A = 0.013274 B = 0.002510 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.900750 B =11152.144831 C =12854.720400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.062 3.938 3 C -0.220 4.220 4 C -0.005 4.005 5 C 0.329 3.671 6 F -0.202 7.202 7 F -0.209 7.209 8 N -0.349 5.349 9 C 0.104 3.896 10 C 0.499 3.501 11 O -0.565 6.565 12 N -0.706 5.706 13 C 0.146 3.854 14 H 0.059 0.941 15 C -0.153 4.153 16 C -0.108 4.108 17 C -0.112 4.112 18 C 0.150 3.850 19 N -0.751 5.751 20 C -0.246 4.246 21 H 0.078 0.922 22 C -0.080 4.080 23 N -0.971 5.971 24 Si 0.976 3.024 25 H -0.264 1.264 26 H -0.294 1.294 27 H -0.292 1.292 28 N -0.302 5.302 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.192 0.808 33 H 0.185 0.815 34 H 0.154 0.846 35 H 0.135 0.865 36 H 0.416 0.584 37 H 0.038 0.962 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.042 0.958 43 H 0.058 0.942 44 H 0.028 0.972 45 H 0.019 0.981 46 H 0.371 0.629 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.776 -4.880 5.529 26.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.104 4.104 3 C -0.249 4.249 4 C -0.132 4.132 5 C 0.274 3.726 6 F -0.183 7.183 7 F -0.190 7.190 8 N -0.130 5.130 9 C -0.021 4.021 10 C 0.284 3.716 11 O -0.443 6.443 12 N -0.360 5.360 13 C 0.042 3.958 14 H 0.078 0.922 15 C -0.211 4.211 16 C -0.146 4.146 17 C -0.150 4.150 18 C 0.024 3.976 19 N -0.393 5.393 20 C -0.377 4.377 21 H 0.096 0.904 22 C -0.272 4.272 23 N -0.622 5.622 24 Si 0.805 3.195 25 H -0.188 1.188 26 H -0.221 1.221 27 H -0.219 1.219 28 N -0.125 5.125 29 H 0.114 0.886 30 H 0.120 0.880 31 H 0.088 0.912 32 H 0.209 0.791 33 H 0.202 0.798 34 H 0.172 0.828 35 H 0.153 0.847 36 H 0.253 0.747 37 H 0.057 0.943 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.046 0.954 45 H 0.037 0.963 46 H 0.202 0.798 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -25.842 -6.052 4.829 26.977 hybrid contribution 1.521 1.170 0.288 1.941 sum -24.321 -4.882 5.116 25.328 Atomic orbital electron populations 1.20345 0.83465 1.04470 1.04425 1.23076 0.98887 0.90054 0.98384 1.21610 0.89005 1.02003 1.12326 1.21916 0.97998 0.85668 1.07662 1.20626 0.80055 1.01187 0.70716 1.93022 1.78114 1.95916 1.51252 1.93079 1.77745 1.96120 1.52105 1.47936 1.05113 1.03632 1.56359 1.21792 0.86119 0.98807 0.95351 1.20964 0.80807 0.78425 0.91402 1.90733 1.54204 1.52499 1.46877 1.45939 1.29807 1.50314 1.09903 1.20963 0.94512 0.98210 0.82101 0.92223 1.22085 0.98949 0.97549 1.02523 1.21753 0.91114 0.97483 1.04257 1.21584 0.93918 0.98378 1.01156 1.20854 0.90570 0.89303 0.96856 1.42671 1.03165 1.11216 1.82294 1.19714 0.84189 0.96832 1.37011 0.90435 1.25647 1.02793 0.95724 1.03053 1.69842 1.35757 1.02203 1.54431 0.85028 0.79945 0.77701 0.76816 1.18832 1.22089 1.21858 1.77296 0.86237 1.24232 1.24744 0.88620 0.88012 0.91176 0.79104 0.79813 0.82840 0.84707 0.74679 0.94304 0.90248 0.90490 0.88915 0.89052 0.93928 0.92358 0.95424 0.96271 0.79758 0.93991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.45 71.24 0.74 -0.04 16 2 C 0.06 1.25 7.22 43.10 0.31 1.57 16 3 C -0.22 -3.98 10.63 21.99 0.23 -3.74 16 4 C -0.01 -0.12 6.37 41.40 0.26 0.15 16 5 C 0.33 6.58 5.30 71.24 0.38 6.96 16 6 F -0.20 -4.49 16.39 44.97 0.74 -3.75 16 7 F -0.21 -5.97 17.30 44.97 0.78 -5.19 16 8 N -0.35 -8.70 3.10 -338.42 -1.05 -9.75 16 9 C 0.10 2.18 6.71 85.63 0.57 2.76 16 10 C 0.50 13.01 7.86 87.65 0.69 13.70 16 11 O -0.56 -19.92 16.09 -3.04 -0.05 -19.97 16 12 N -0.71 -14.87 4.53 -442.55 -2.00 -16.87 16 13 C 0.15 3.30 2.58 44.99 0.12 3.41 16 14 H 0.06 1.73 7.57 -2.39 -0.02 1.71 16 15 C -0.15 -2.89 9.48 71.98 0.68 -2.21 16 16 C -0.11 -2.33 4.76 30.60 0.15 -2.18 16 17 C -0.11 -3.51 5.22 30.60 0.16 -3.35 16 18 C 0.15 5.90 6.26 86.38 0.54 6.44 16 19 N -0.75 -39.23 5.60 -343.46 -1.92 -41.16 16 20 C -0.25 -13.98 9.99 84.03 0.84 -13.14 16 21 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 22 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 23 N -0.97 -60.78 13.06 21.65 0.28 -60.49 16 24 Si 0.98 46.60 29.55 68.60 2.03 48.63 16 25 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 26 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 28 N -0.30 -7.84 12.57 -47.39 -0.60 -8.43 16 29 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.19 1.86 8.06 -2.91 -0.02 1.83 16 33 H 0.19 1.89 8.11 -2.39 -0.02 1.87 16 34 H 0.15 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.14 2.49 6.96 -2.39 -0.02 2.48 16 36 H 0.42 6.32 8.61 -92.71 -0.80 5.52 16 37 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.06 1.84 7.75 -2.39 -0.02 1.82 16 44 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.37 20.86 7.67 -92.71 -0.71 20.15 16 47 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -83.72 406.39 3.84 -79.89 By element: Atomic # 1 Polarization: 31.52 SS G_CDS: -0.51 Total: 31.01 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 6.14 Total: 6.09 kcal Atomic # 7 Polarization: -131.41 SS G_CDS: -5.29 Total: -136.70 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.05 Total: -19.97 kcal Atomic # 9 Polarization: -10.46 SS G_CDS: 1.51 Total: -8.94 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -83.72 3.84 -79.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283175735.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.581 kcal (2) G-P(sol) polarization free energy of solvation -83.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds