Wall clock time and date at job start Wed Apr 1 2020 03:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47114 * 2 1 4 4 N 1.30292 * 126.34831 * 277.09077 * 3 2 1 5 5 N 1.28533 * 110.05607 * 179.97438 * 4 3 2 6 6 C 1.31216 * 109.85896 * 359.74168 * 5 4 3 7 7 N 1.38573 * 126.47374 * 180.25776 * 6 5 4 8 8 C 1.46901 * 111.00269 * 250.15080 * 7 6 5 9 9 C 1.46902 * 111.00015 * 14.10391 * 7 6 5 10 10 H 1.08996 * 109.47070 * 55.00076 * 9 7 6 11 11 C 1.52995 * 109.47021 * 294.99825 * 9 7 6 12 12 C 1.50704 * 109.47152 * 175.00025 * 9 7 6 13 13 H 1.08004 * 119.99924 * 0.02562 * 12 9 7 14 14 C 1.37875 * 119.99865 * 179.97438 * 12 9 7 15 15 N 1.31512 * 120.00337 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99657 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47301 * 90.00146 * 16 14 12 18 18 H 1.48503 * 109.46980 * 209.99733 * 16 14 12 19 19 H 1.48494 * 109.47316 * 330.00243 * 16 14 12 20 20 N 1.36457 * 107.05074 * 0.40295 * 6 5 4 21 21 C 1.46500 * 127.13430 * 179.87584 * 20 6 5 22 22 C 1.53001 * 109.47252 * 83.46210 * 21 20 6 23 23 H 1.08996 * 110.33128 * 308.09595 * 22 21 20 24 24 C 1.54480 * 110.37126 * 185.84119 * 22 21 20 25 25 C 1.54509 * 104.06357 * 217.19135 * 24 22 21 26 26 F 1.39902 * 110.50987 * 118.64675 * 25 24 22 27 27 F 1.39900 * 110.51310 * 241.22091 * 25 24 22 28 28 C 1.54484 * 104.06185 * 0.02562 * 25 24 22 29 29 O 1.44422 * 110.36930 * 70.34739 * 22 21 20 30 30 H 1.09004 * 109.46794 * 174.68298 * 1 2 3 31 31 H 1.08998 * 109.47338 * 294.68143 * 1 2 3 32 32 H 1.08999 * 109.47112 * 54.68524 * 1 2 3 33 33 H 1.08998 * 109.47214 * 239.99893 * 2 1 3 34 34 H 1.08996 * 109.46924 * 119.99951 * 2 1 3 35 35 H 1.09001 * 109.47480 * 63.81700 * 8 7 6 36 36 H 1.08995 * 109.47371 * 183.82232 * 8 7 6 37 37 H 1.09006 * 109.47196 * 303.82130 * 8 7 6 38 38 H 1.09004 * 109.47235 * 300.00290 * 11 9 7 39 39 H 1.09003 * 109.47457 * 60.00165 * 11 9 7 40 40 H 1.08997 * 109.47338 * 180.02562 * 11 9 7 41 41 H 0.96998 * 120.00329 * 179.97438 * 15 14 12 42 42 H 1.09002 * 109.47189 * 203.46959 * 21 20 6 43 43 H 1.09003 * 109.47164 * 323.46236 * 21 20 6 44 44 H 1.08999 * 110.51330 * 335.84306 * 24 22 21 45 45 H 1.09008 * 110.50584 * 98.55251 * 24 22 21 46 46 H 1.08993 * 110.37039 * 142.80877 * 28 25 24 47 47 H 1.08997 * 110.37118 * 265.03158 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1676 2.1920 -1.0414 5 7 2.6203 3.3405 -0.6835 6 6 2.7943 3.3656 0.6168 7 7 3.2628 4.4339 1.3648 8 6 4.6103 4.1629 1.8833 9 6 3.2405 5.6757 0.5803 10 1 2.2355 5.8428 0.1930 11 6 4.2240 5.5599 -0.5859 12 6 3.6386 6.8328 1.4601 13 1 3.8840 6.6626 2.4980 14 6 3.6905 8.1085 0.9396 15 7 3.3931 8.3156 -0.3246 16 14 4.1832 9.5428 2.0302 17 1 5.6556 9.7265 1.9714 18 1 3.5109 10.7791 1.5559 19 1 3.7748 9.2632 3.4303 20 7 2.4300 2.1398 1.0930 21 6 2.4539 1.6896 2.4869 22 6 1.1756 2.1466 3.1925 23 1 1.0254 3.2165 3.0485 24 6 1.2435 1.8110 4.6989 25 6 -0.2020 1.3992 5.0573 26 9 -0.2366 0.0763 5.5111 27 9 -0.7322 2.2615 6.0230 28 6 -0.9720 1.5342 3.7248 29 8 0.0371 1.4080 2.6984 30 1 -0.3633 -1.0233 -0.0952 31 1 -0.3634 0.4291 0.9337 32 1 -0.3633 0.5941 -0.8386 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.3063 4.0605 1.0507 36 1 4.9265 4.9876 2.5219 37 1 4.5980 3.2393 2.4622 38 1 5.2291 5.3928 -0.1985 39 1 3.9361 4.7230 -1.2223 40 1 4.2078 6.4815 -1.1677 41 1 3.4292 9.2131 -0.6907 42 1 2.5162 0.6017 2.5163 43 1 3.3203 2.1168 2.9919 44 1 1.9311 0.9839 4.8753 45 1 1.5441 2.6879 5.2723 46 1 -1.7111 0.7386 3.6315 47 1 -1.4554 2.5092 3.6630 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001401447471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:35 Heat of formation + Delta-G solvation = -42.625514 kcal Electronic energy + Delta-G solvation = -32446.455199 eV Core-core repulsion = 27916.560648 eV Total energy + Delta-G solvation = -4529.894550 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.176 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.31885 -47.45261 -42.52758 -39.59512 -37.36805 -35.10952 -33.72109 -32.67715 -31.96630 -30.04652 -28.89914 -28.55728 -26.64981 -25.32148 -25.19117 -23.71008 -22.91044 -21.95832 -21.58201 -20.20021 -19.44251 -18.22849 -17.63563 -17.16864 -16.48791 -16.16410 -16.02975 -15.80554 -15.57079 -15.18097 -14.85619 -14.75706 -14.45659 -14.33646 -14.00312 -13.77189 -13.67777 -13.36314 -13.20730 -12.91154 -12.66103 -12.49180 -12.34737 -12.20654 -12.13173 -11.67395 -11.49555 -11.42257 -11.21966 -11.17496 -11.00677 -10.92281 -10.73874 -10.38749 -10.30942 -10.19358 -10.08009 -9.79497 -9.68579 -8.86794 -8.77448 -8.41899 -7.43835 -6.04861 -4.12673 2.20127 2.54577 3.09020 3.14522 3.26665 3.33949 3.35772 3.38243 3.42496 3.81894 4.04674 4.29604 4.39592 4.50922 4.53018 4.59026 4.68700 4.83532 4.89182 5.03965 5.04582 5.15254 5.19328 5.26525 5.36603 5.43627 5.53117 5.66021 5.78335 5.84495 5.96794 6.05523 6.12915 6.26799 6.35875 6.41338 6.46094 6.82818 7.01181 7.14756 7.32087 7.49536 7.65778 7.72639 7.95369 8.29920 8.45283 8.89020 9.38588 9.52156 11.01176 Molecular weight = 344.18amu Principal moments of inertia in cm(-1) A = 0.010734 B = 0.003931 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.888244 B = 7121.077045 C = 8974.870871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.023 4.023 3 C 0.166 3.834 4 N -0.292 5.292 5 N -0.311 5.311 6 C 0.378 3.622 7 N -0.457 5.457 8 C 0.035 3.965 9 C 0.230 3.770 10 H 0.048 0.952 11 C -0.179 4.179 12 C -0.514 4.514 13 H 0.063 0.937 14 C 0.064 3.936 15 N -0.883 5.883 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 N -0.484 5.484 21 C 0.123 3.877 22 C 0.060 3.940 23 H 0.103 0.897 24 C -0.187 4.187 25 C 0.257 3.743 26 F -0.188 7.188 27 F -0.187 7.187 28 C 0.014 3.986 29 O -0.341 6.341 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.093 0.907 37 H 0.041 0.959 38 H 0.020 0.980 39 H 0.052 0.948 40 H 0.088 0.912 41 H 0.262 0.738 42 H 0.101 0.899 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.117 0.883 46 H 0.120 0.880 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.858 -17.990 10.491 21.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.062 4.062 3 C -0.101 4.101 4 N -0.130 5.130 5 N -0.154 5.154 6 C 0.022 3.978 7 N -0.182 5.182 8 C -0.112 4.112 9 C 0.126 3.874 10 H 0.066 0.934 11 C -0.239 4.239 12 C -0.553 4.553 13 H 0.081 0.919 14 C -0.139 4.139 15 N -0.521 5.521 16 Si 0.726 3.274 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 N -0.180 5.180 21 C -0.001 4.001 22 C 0.002 3.998 23 H 0.120 0.880 24 C -0.226 4.226 25 C 0.220 3.780 26 F -0.169 7.169 27 F -0.168 7.168 28 C -0.064 4.064 29 O -0.260 6.260 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.112 0.888 37 H 0.060 0.940 38 H 0.039 0.961 39 H 0.071 0.929 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.119 0.881 43 H 0.130 0.870 44 H 0.127 0.873 45 H 0.135 0.865 46 H 0.138 0.862 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.210 -17.392 9.128 20.321 hybrid contribution 0.695 0.532 1.824 2.023 sum -4.515 -16.860 10.953 20.606 Atomic orbital electron populations 1.21842 0.93690 1.01622 1.03727 1.19794 0.96816 0.86588 1.03043 1.24546 1.04925 0.97681 0.82950 1.73974 1.16172 0.98632 1.24270 1.74878 1.20336 1.13023 1.07114 1.23251 1.00349 0.84954 0.89224 1.59448 1.23017 1.00460 1.35238 1.22376 0.88238 1.00846 0.99754 1.19339 0.97290 0.81141 0.89608 0.93391 1.22548 0.97423 1.03375 1.00518 1.21013 1.47016 0.90922 0.96345 0.91912 1.24888 0.95220 0.98683 0.95062 1.69921 1.47964 1.21713 1.12500 0.86505 0.78497 0.81824 0.80587 1.20713 1.21191 1.19899 1.46097 1.51739 1.12316 1.07868 1.21839 0.97258 1.01456 0.79581 1.23489 0.87292 0.98629 0.90390 0.87953 1.23929 0.94721 1.06004 0.97939 1.22358 0.95778 0.73255 0.86608 1.93047 1.97332 1.35898 1.90664 1.93057 1.87953 1.69477 1.66323 1.24360 0.92340 1.05694 0.83994 1.89298 1.23840 1.73272 1.39578 0.92385 0.90667 0.92226 0.89339 0.90954 0.94302 0.88831 0.93988 0.96098 0.92907 0.89380 0.92766 0.88108 0.86998 0.87282 0.86484 0.86239 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.89 37.16 0.37 -1.26 16 2 C -0.02 -0.26 6.36 -27.89 -0.18 -0.43 16 3 C 0.17 2.68 7.32 -154.02 -1.13 1.56 16 4 N -0.29 -5.97 12.18 32.99 0.40 -5.57 16 5 N -0.31 -7.05 8.97 30.31 0.27 -6.78 16 6 C 0.38 7.55 6.68 -318.88 -2.13 5.42 16 7 N -0.46 -9.41 4.77 -176.08 -0.84 -10.25 16 8 C 0.04 0.62 8.75 60.07 0.53 1.14 16 9 C 0.23 5.78 2.08 -68.86 -0.14 5.63 16 10 H 0.05 1.39 8.11 -51.93 -0.42 0.97 16 11 C -0.18 -4.53 8.27 37.16 0.31 -4.22 16 12 C -0.51 -13.42 7.94 -34.44 -0.27 -13.69 16 13 H 0.06 1.58 6.75 -52.48 -0.35 1.22 16 14 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 15 N -0.88 -24.99 11.32 55.43 0.63 -24.37 16 16 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 N -0.48 -7.54 2.81 -114.09 -0.32 -7.86 16 21 C 0.12 1.32 5.58 -4.04 -0.02 1.29 16 22 C 0.06 0.63 3.52 -25.95 -0.09 0.54 16 23 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 24 C -0.19 -1.47 6.32 -25.16 -0.16 -1.63 16 25 C 0.26 2.29 2.75 -25.16 -0.07 2.22 16 26 F -0.19 -1.84 17.12 2.25 0.04 -1.80 16 27 F -0.19 -1.94 17.13 2.25 0.04 -1.90 16 28 C 0.01 0.12 7.23 37.94 0.27 0.40 16 29 O -0.34 -3.62 8.68 -35.23 -0.31 -3.93 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.85 5.26 -51.93 -0.27 0.58 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.66 6.98 -51.93 -0.36 0.29 16 35 H 0.04 0.73 6.29 -51.93 -0.33 0.40 16 36 H 0.09 1.67 6.52 -51.93 -0.34 1.33 16 37 H 0.04 0.57 5.80 -51.93 -0.30 0.27 16 38 H 0.02 0.49 6.39 -51.93 -0.33 0.16 16 39 H 0.05 1.33 5.41 -51.93 -0.28 1.05 16 40 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.10 0.83 6.96 -51.93 -0.36 0.47 16 43 H 0.11 1.08 5.85 -51.93 -0.30 0.77 16 44 H 0.11 0.67 7.79 -51.93 -0.40 0.26 16 45 H 0.12 0.86 8.06 -51.92 -0.42 0.44 16 46 H 0.12 0.81 8.12 -51.93 -0.42 0.39 16 47 H 0.10 0.79 8.13 -51.93 -0.42 0.37 16 LS Contribution 371.19 15.07 5.59 5.59 Total: -1.00 -32.18 371.19 -8.79 -40.97 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.46 Total: 1.72 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -2.81 Total: -1.41 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.14 Total: -54.83 kcal Atomic # 8 Polarization: -3.62 SS G_CDS: -0.31 Total: -3.93 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.08 Total: -3.70 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.18 -8.79 -40.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401447471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.655 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds