Wall clock time and date at job start Wed Apr 1 2020 03:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47114 * 2 1 4 4 N 1.30292 * 126.34831 * 277.09077 * 3 2 1 5 5 N 1.28533 * 110.05607 * 179.97438 * 4 3 2 6 6 C 1.31216 * 109.85896 * 359.74168 * 5 4 3 7 7 N 1.38573 * 126.47374 * 180.25776 * 6 5 4 8 8 C 1.46901 * 111.00269 * 250.15080 * 7 6 5 9 9 C 1.46902 * 111.00015 * 14.10391 * 7 6 5 10 10 H 1.08996 * 109.47070 * 55.00076 * 9 7 6 11 11 C 1.52995 * 109.47021 * 294.99825 * 9 7 6 12 12 C 1.50704 * 109.47152 * 175.00025 * 9 7 6 13 13 H 1.08004 * 119.99924 * 0.02562 * 12 9 7 14 14 C 1.37875 * 119.99865 * 179.97438 * 12 9 7 15 15 N 1.31512 * 120.00337 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99657 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47301 * 90.00146 * 16 14 12 18 18 H 1.48503 * 109.46980 * 209.99733 * 16 14 12 19 19 H 1.48494 * 109.47316 * 330.00243 * 16 14 12 20 20 N 1.36457 * 107.05074 * 0.40295 * 6 5 4 21 21 C 1.46500 * 127.13430 * 179.87584 * 20 6 5 22 22 C 1.53001 * 109.47252 * 83.46210 * 21 20 6 23 23 H 1.08996 * 110.33128 * 308.09595 * 22 21 20 24 24 C 1.54480 * 110.37126 * 185.84119 * 22 21 20 25 25 C 1.54509 * 104.06357 * 217.19135 * 24 22 21 26 26 F 1.39902 * 110.50987 * 118.64675 * 25 24 22 27 27 F 1.39900 * 110.51310 * 241.22091 * 25 24 22 28 28 C 1.54484 * 104.06185 * 0.02562 * 25 24 22 29 29 O 1.44422 * 110.36930 * 70.34739 * 22 21 20 30 30 H 1.09004 * 109.46794 * 174.68298 * 1 2 3 31 31 H 1.08998 * 109.47338 * 294.68143 * 1 2 3 32 32 H 1.08999 * 109.47112 * 54.68524 * 1 2 3 33 33 H 1.08998 * 109.47214 * 239.99893 * 2 1 3 34 34 H 1.08996 * 109.46924 * 119.99951 * 2 1 3 35 35 H 1.09001 * 109.47480 * 63.81700 * 8 7 6 36 36 H 1.08995 * 109.47371 * 183.82232 * 8 7 6 37 37 H 1.09006 * 109.47196 * 303.82130 * 8 7 6 38 38 H 1.09004 * 109.47235 * 300.00290 * 11 9 7 39 39 H 1.09003 * 109.47457 * 60.00165 * 11 9 7 40 40 H 1.08997 * 109.47338 * 180.02562 * 11 9 7 41 41 H 0.96998 * 120.00329 * 179.97438 * 15 14 12 42 42 H 1.09002 * 109.47189 * 203.46959 * 21 20 6 43 43 H 1.09003 * 109.47164 * 323.46236 * 21 20 6 44 44 H 1.08999 * 110.51330 * 335.84306 * 24 22 21 45 45 H 1.09008 * 110.50584 * 98.55251 * 24 22 21 46 46 H 1.08993 * 110.37039 * 142.80877 * 28 25 24 47 47 H 1.08997 * 110.37118 * 265.03158 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1676 2.1920 -1.0414 5 7 2.6203 3.3405 -0.6835 6 6 2.7943 3.3656 0.6168 7 7 3.2628 4.4339 1.3648 8 6 4.6103 4.1629 1.8833 9 6 3.2405 5.6757 0.5803 10 1 2.2355 5.8428 0.1930 11 6 4.2240 5.5599 -0.5859 12 6 3.6386 6.8328 1.4601 13 1 3.8840 6.6626 2.4980 14 6 3.6905 8.1085 0.9396 15 7 3.3931 8.3156 -0.3246 16 14 4.1832 9.5428 2.0302 17 1 5.6556 9.7265 1.9714 18 1 3.5109 10.7791 1.5559 19 1 3.7748 9.2632 3.4303 20 7 2.4300 2.1398 1.0930 21 6 2.4539 1.6896 2.4869 22 6 1.1756 2.1466 3.1925 23 1 1.0254 3.2165 3.0485 24 6 1.2435 1.8110 4.6989 25 6 -0.2020 1.3992 5.0573 26 9 -0.2366 0.0763 5.5111 27 9 -0.7322 2.2615 6.0230 28 6 -0.9720 1.5342 3.7248 29 8 0.0371 1.4080 2.6984 30 1 -0.3633 -1.0233 -0.0952 31 1 -0.3634 0.4291 0.9337 32 1 -0.3633 0.5941 -0.8386 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.3063 4.0605 1.0507 36 1 4.9265 4.9876 2.5219 37 1 4.5980 3.2393 2.4622 38 1 5.2291 5.3928 -0.1985 39 1 3.9361 4.7230 -1.2223 40 1 4.2078 6.4815 -1.1677 41 1 3.4292 9.2131 -0.6907 42 1 2.5162 0.6017 2.5163 43 1 3.3203 2.1168 2.9919 44 1 1.9311 0.9839 4.8753 45 1 1.5441 2.6879 5.2723 46 1 -1.7111 0.7386 3.6315 47 1 -1.4554 2.5092 3.6630 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001401447471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:34 Heat of formation + Delta-G solvation = -61.138689 kcal Electronic energy + Delta-G solvation = -32447.257990 eV Core-core repulsion = 27916.560648 eV Total energy + Delta-G solvation = -4530.697342 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.176 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.04175 -48.18289 -43.92053 -40.37712 -39.06144 -36.28350 -35.07958 -34.28779 -32.79366 -31.03914 -30.60305 -30.01949 -27.60381 -27.24933 -26.69090 -24.83388 -23.86722 -23.16734 -22.66254 -21.38104 -21.06347 -18.99741 -18.49751 -18.29832 -17.97284 -17.42417 -17.19794 -17.00087 -16.73578 -16.49426 -16.00713 -15.81957 -15.66757 -15.30895 -15.10928 -14.96369 -14.76879 -14.50660 -14.37260 -14.05351 -13.70399 -13.48491 -13.40261 -13.24978 -13.14767 -13.04655 -12.93566 -12.85976 -12.65864 -12.57630 -12.37808 -12.17394 -12.04954 -12.00844 -11.91975 -11.79385 -11.32686 -11.13538 -10.96722 -10.80101 -10.47448 -10.36835 -9.04808 -8.10143 -6.25425 0.87682 1.32557 1.45993 1.46934 1.57231 1.96722 2.35379 2.42572 2.45516 2.69911 3.01027 3.14985 3.19890 3.36370 3.48978 3.65712 3.68093 3.87004 3.99860 4.04934 4.12494 4.22948 4.41567 4.46579 4.46838 4.51090 4.57402 4.57965 4.67322 4.73159 4.76664 4.85414 4.97252 5.04527 5.05284 5.16017 5.27449 5.33729 5.38716 5.49985 5.55165 5.65359 5.68143 5.89360 6.10162 6.25000 6.63994 6.84789 7.43760 7.93965 8.96304 Molecular weight = 344.18amu Principal moments of inertia in cm(-1) A = 0.010734 B = 0.003931 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.888244 B = 7121.077045 C = 8974.870871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.022 4.022 3 C 0.190 3.810 4 N -0.342 5.342 5 N -0.364 5.364 6 C 0.362 3.638 7 N -0.454 5.454 8 C 0.036 3.964 9 C 0.243 3.757 10 H -0.004 1.004 11 C -0.162 4.162 12 C -0.520 4.520 13 H 0.074 0.926 14 C 0.011 3.989 15 N -0.921 5.921 16 Si 0.968 3.032 17 H -0.274 1.274 18 H -0.290 1.290 19 H -0.261 1.261 20 N -0.473 5.473 21 C 0.112 3.888 22 C 0.062 3.938 23 H 0.069 0.931 24 C -0.175 4.175 25 C 0.256 3.744 26 F -0.191 7.191 27 F -0.197 7.197 28 C 0.012 3.988 29 O -0.352 6.352 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.032 0.968 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.023 0.977 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.028 0.972 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.261 0.739 42 H 0.139 0.861 43 H 0.128 0.872 44 H 0.136 0.864 45 H 0.123 0.877 46 H 0.139 0.861 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.301 -20.485 13.429 24.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.062 4.062 3 C -0.079 4.079 4 N -0.179 5.179 5 N -0.206 5.206 6 C 0.005 3.995 7 N -0.177 5.177 8 C -0.111 4.111 9 C 0.137 3.863 10 H 0.013 0.987 11 C -0.221 4.221 12 C -0.559 4.559 13 H 0.092 0.908 14 C -0.188 4.188 15 N -0.560 5.560 16 Si 0.793 3.207 17 H -0.199 1.199 18 H -0.216 1.216 19 H -0.185 1.185 20 N -0.168 5.168 21 C -0.009 4.009 22 C 0.004 3.996 23 H 0.087 0.913 24 C -0.214 4.214 25 C 0.220 3.780 26 F -0.172 7.172 27 F -0.179 7.179 28 C -0.066 4.066 29 O -0.271 6.271 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.118 0.882 34 H 0.127 0.873 35 H 0.042 0.958 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.157 0.843 43 H 0.146 0.854 44 H 0.154 0.846 45 H 0.141 0.859 46 H 0.156 0.844 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.654 -19.926 12.102 23.774 hybrid contribution 0.421 1.160 0.909 1.532 sum -4.233 -18.766 13.011 23.225 Atomic orbital electron populations 1.21796 0.93116 1.03048 1.02351 1.20123 0.97078 0.83592 1.05395 1.25501 1.01599 0.98780 0.82038 1.73866 1.18745 0.98822 1.26511 1.74693 1.21981 1.14764 1.09203 1.23097 1.01141 0.86294 0.88977 1.59301 1.24811 0.99403 1.34218 1.22469 0.86140 1.03008 0.99443 1.18873 0.94047 0.83532 0.89808 0.98651 1.22338 0.97940 1.01509 1.00363 1.21325 1.46344 0.91339 0.96855 0.90757 1.25786 0.95193 1.01576 0.96243 1.70096 1.49261 1.22129 1.14468 0.85412 0.78230 0.77968 0.79125 1.19941 1.21604 1.18519 1.46242 1.50407 1.10427 1.09729 1.22341 0.97988 1.03794 0.76784 1.23321 0.87245 0.96863 0.92180 0.91315 1.23888 0.94552 1.07293 0.95645 1.22417 0.96428 0.72935 0.86239 1.93044 1.97378 1.36035 1.90703 1.93040 1.88199 1.69850 1.66763 1.24471 0.92265 1.06341 0.83506 1.89277 1.24315 1.73009 1.40537 0.89241 0.91080 0.94873 0.88208 0.87304 0.95834 0.89048 0.89445 0.95330 0.93336 0.92435 0.92974 0.84322 0.85446 0.84560 0.85887 0.84366 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.89 71.98 0.71 -2.05 16 2 C -0.02 -0.44 6.36 29.85 0.19 -0.25 16 3 C 0.19 5.89 7.32 137.64 1.01 6.90 16 4 N -0.34 -14.32 12.18 -49.54 -0.60 -14.93 16 5 N -0.36 -17.24 8.97 -58.01 -0.52 -17.76 16 6 C 0.36 14.68 6.68 260.11 1.74 16.42 16 7 N -0.45 -18.87 4.77 -711.00 -3.39 -22.26 16 8 C 0.04 1.22 8.75 127.69 1.12 2.34 16 9 C 0.24 12.74 2.08 44.17 0.09 12.83 16 10 H 0.00 -0.28 8.11 -2.39 -0.02 -0.30 16 11 C -0.16 -8.60 8.27 71.98 0.60 -8.01 16 12 C -0.52 -27.58 7.94 25.60 0.20 -27.37 16 13 H 0.07 3.69 6.75 -2.91 -0.02 3.67 16 14 C 0.01 0.61 5.30 84.65 0.45 1.06 16 15 N -0.92 -54.17 11.32 21.45 0.24 -53.93 16 16 Si 0.97 42.49 29.54 68.60 2.03 44.51 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 20 N -0.47 -14.04 2.81 -514.86 -1.45 -15.49 16 21 C 0.11 2.02 5.58 86.38 0.48 2.50 16 22 C 0.06 1.16 3.52 31.10 0.11 1.26 16 23 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 24 C -0.18 -2.18 6.32 31.61 0.20 -1.98 16 25 C 0.26 3.91 2.75 31.61 0.09 4.00 16 26 F -0.19 -3.11 17.12 44.97 0.77 -2.34 16 27 F -0.20 -3.74 17.13 44.97 0.77 -2.97 16 28 C 0.01 0.18 7.23 72.49 0.52 0.70 16 29 O -0.35 -6.67 8.68 -148.98 -1.29 -7.97 16 30 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.07 1.43 5.26 -2.39 -0.01 1.42 16 32 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.11 1.38 6.98 -2.39 -0.02 1.36 16 35 H 0.02 0.86 6.29 -2.39 -0.02 0.84 16 36 H 0.09 3.12 6.52 -2.39 -0.02 3.11 16 37 H 0.09 2.12 5.80 -2.38 -0.01 2.10 16 38 H 0.03 1.40 6.39 -2.38 -0.02 1.39 16 39 H 0.05 2.60 5.41 -2.39 -0.01 2.59 16 40 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 41 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 42 H 0.14 1.49 6.96 -2.39 -0.02 1.48 16 43 H 0.13 1.90 5.85 -2.39 -0.01 1.89 16 44 H 0.14 0.98 7.79 -2.39 -0.02 0.96 16 45 H 0.12 1.44 8.06 -2.38 -0.02 1.42 16 46 H 0.14 1.53 8.12 -2.39 -0.02 1.51 16 47 H 0.09 1.45 8.13 -2.39 -0.02 1.43 16 Total: -1.00 -75.47 371.19 5.07 -70.40 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 1.01 Total: 14.38 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 7.51 Total: 8.36 kcal Atomic # 7 Polarization: -118.65 SS G_CDS: -5.72 Total: -124.37 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -1.29 Total: -7.97 kcal Atomic # 9 Polarization: -6.85 SS G_CDS: 1.54 Total: -5.31 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -75.47 5.07 -70.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401447471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.261 kcal (2) G-P(sol) polarization free energy of solvation -75.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds