Wall clock time and date at job start Wed Apr 1 2020 03:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30520 * 126.34707 * 2 1 4 4 N 1.28596 * 109.67013 * 179.97438 * 3 2 1 5 5 C 1.30523 * 109.67384 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.34622 * 179.97438 * 5 4 3 7 7 N 1.46503 * 109.46915 * 89.97471 * 6 5 4 8 8 C 1.34778 * 119.99938 * 180.02562 * 7 6 5 9 9 O 1.21602 * 119.99962 * 359.97438 * 8 7 6 10 10 C 1.47429 * 120.00152 * 180.02562 * 8 7 6 11 11 C 1.41300 * 126.40962 * 359.67903 * 10 8 7 12 12 N 1.30445 * 108.01555 * 179.88366 * 11 10 8 13 13 N 1.39930 * 108.90156 * 0.38347 * 12 11 10 14 14 C 1.46508 * 125.75486 * 179.77430 * 13 12 11 15 15 C 1.50696 * 109.46666 * 269.97643 * 14 13 12 16 16 H 1.07994 * 120.00570 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99626 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99880 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 119.99962 * 359.97438 * 17 15 14 20 20 H 1.48510 * 109.46676 * 90.00648 * 19 17 15 21 21 H 1.48496 * 109.47382 * 210.00104 * 19 17 15 22 22 H 1.48492 * 109.47353 * 330.00893 * 19 17 15 23 23 C 1.34263 * 108.49349 * 359.75566 * 13 12 11 24 24 C 1.50698 * 126.29283 * 179.97438 * 23 13 12 25 25 N 1.35491 * 126.34123 * 179.69024 * 2 1 3 26 26 C 1.46495 * 126.98605 * 0.04022 * 25 2 1 27 27 C 1.53006 * 117.49411 * 311.00536 * 26 25 2 28 28 C 1.53003 * 117.49907 * 242.34965 * 26 25 2 29 29 H 1.09003 * 109.47165 * 95.31569 * 1 2 3 30 30 H 1.08994 * 109.47770 * 215.31829 * 1 2 3 31 31 H 1.08999 * 109.47458 * 335.32096 * 1 2 3 32 32 H 1.08992 * 109.47430 * 209.97613 * 6 5 4 33 33 H 1.09008 * 109.47105 * 329.97906 * 6 5 4 34 34 H 0.96993 * 119.99980 * 0.02562 * 7 6 5 35 35 H 1.07998 * 125.98923 * 0.02562 * 11 10 8 36 36 H 1.08994 * 109.47048 * 29.97325 * 14 13 12 37 37 H 1.08998 * 109.46988 * 149.97859 * 14 13 12 38 38 H 0.97000 * 120.00024 * 179.97438 * 18 17 15 39 39 H 1.09003 * 109.46316 * 269.99494 * 24 23 13 40 40 H 1.08995 * 109.47033 * 29.99282 * 24 23 13 41 41 H 1.08991 * 109.47129 * 150.00205 * 24 23 13 42 42 H 1.08998 * 115.55788 * 96.67271 * 26 25 2 43 43 H 1.08996 * 117.50411 * 0.02562 * 27 26 25 44 44 H 1.09008 * 117.49617 * 145.02189 * 27 26 25 45 45 H 1.08998 * 117.50014 * 214.97607 * 28 26 25 46 46 H 1.09005 * 117.49980 * 359.97228 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2805 1.0513 0.0000 4 7 3.5124 0.6822 0.0005 5 6 3.5806 -0.6212 0.0004 6 6 4.8395 -1.4497 0.0003 7 7 5.2477 -1.7178 1.3815 8 6 6.3549 -2.4458 1.6278 9 8 7.0148 -2.8804 0.7035 10 6 6.7654 -2.7161 3.0177 11 6 6.1064 -2.2757 4.1876 12 7 6.7727 -2.7198 5.2173 13 7 7.8782 -3.4472 4.7626 14 6 8.8774 -4.1046 5.6088 15 6 10.0011 -3.1431 5.8983 16 1 9.9737 -2.1425 5.4930 17 6 11.0644 -3.5411 6.6807 18 7 12.0449 -2.7019 6.9338 19 14 11.1116 -5.2716 7.3823 20 1 11.7989 -6.1753 6.4250 21 1 11.8487 -5.2632 8.6714 22 1 9.7249 -5.7522 7.6082 23 6 7.8687 -3.4416 3.4200 24 6 8.8774 -4.1048 2.5180 25 7 2.3099 -1.0914 0.0059 26 6 1.8896 -2.4947 0.0127 27 6 0.8332 -2.9108 1.0384 28 6 2.2896 -3.3462 1.2193 29 1 -0.3634 -0.0952 -1.0233 30 1 -0.3634 -0.8384 0.5941 31 1 -0.3634 0.9338 0.4291 32 1 4.6537 -2.3929 -0.5133 33 1 5.6322 -0.9060 -0.5138 34 1 4.7211 -1.3714 2.1188 35 1 5.2074 -1.6783 4.2228 36 1 8.4135 -4.4138 6.5453 37 1 9.2718 -4.9796 5.0923 38 1 12.7928 -2.9817 7.4845 39 1 9.6849 -3.4058 2.3002 40 1 9.2838 -4.9864 3.0137 41 1 8.3932 -4.4018 1.5878 42 1 1.8647 -2.9828 -0.9616 43 1 0.4507 -2.1403 1.7078 44 1 0.1137 -3.6729 0.7390 45 1 2.5275 -4.3944 1.0389 46 1 2.8658 -2.8623 2.0080 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411987783.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:18 Heat of formation + Delta-G solvation = 145.589932 kcal Electronic energy + Delta-G solvation = -29502.448714 eV Core-core repulsion = 25431.404984 eV Total energy + Delta-G solvation = -4071.043730 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.54648 -40.92332 -38.94107 -38.20676 -35.14427 -33.94309 -33.36787 -32.62787 -32.14543 -31.34617 -29.30875 -27.87200 -26.96737 -25.99941 -24.20895 -23.33202 -23.05870 -22.14472 -21.28909 -20.70618 -20.02011 -19.13904 -17.95925 -17.25893 -17.21399 -16.83594 -15.77257 -15.49989 -15.31851 -15.22527 -14.79007 -14.66780 -14.27075 -14.23261 -13.88061 -13.77710 -13.43984 -13.19342 -12.90213 -12.78967 -12.68223 -12.57647 -12.31279 -12.20420 -12.12583 -11.86056 -11.66704 -11.64873 -11.46762 -11.24903 -10.86637 -10.54941 -10.46374 -10.43718 -10.30187 -9.82112 -9.71938 -9.29893 -9.17367 -8.86713 -8.70173 -8.03226 -6.34287 -4.39300 1.29477 1.90081 2.05289 2.45704 2.66565 2.75979 3.02815 3.10066 3.15844 3.20757 3.46423 3.77697 3.77967 3.86438 3.97355 3.99280 4.13815 4.28608 4.47861 4.78942 4.86582 4.91284 4.96745 4.98148 5.03409 5.11647 5.22436 5.26091 5.31530 5.36298 5.47675 5.49229 5.57612 5.62337 5.79254 5.79930 6.00056 6.22083 6.28432 6.40226 6.46938 6.48294 6.55375 6.95465 7.16073 7.50428 7.55040 8.17767 8.22148 8.41687 8.44341 8.69227 9.19158 10.77914 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.021474 B = 0.002247 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.606083 B =12457.921977 C =12643.320256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.181 3.819 3 N -0.294 5.294 4 N -0.270 5.270 5 C 0.161 3.839 6 C 0.218 3.782 7 N -0.730 5.730 8 C 0.610 3.390 9 O -0.550 6.550 10 C -0.329 4.329 11 C 0.061 3.939 12 N -0.291 5.291 13 N -0.313 5.313 14 C 0.225 3.775 15 C -0.546 4.546 16 H 0.082 0.918 17 C 0.081 3.919 18 N -0.882 5.882 19 Si 0.873 3.127 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.264 1.264 23 C 0.171 3.829 24 C -0.095 4.095 25 N -0.440 5.440 26 C 0.041 3.959 27 C -0.166 4.166 28 C -0.158 4.158 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.399 0.601 35 H 0.175 0.825 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.270 0.730 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.142 0.858 43 H 0.107 0.893 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.644 -3.944 -14.442 28.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 N -0.135 5.135 4 N -0.111 5.111 5 C -0.105 4.105 6 C 0.092 3.908 7 N -0.384 5.384 8 C 0.401 3.599 9 O -0.429 6.429 10 C -0.345 4.345 11 C -0.126 4.126 12 N -0.110 5.110 13 N -0.089 5.089 14 C 0.106 3.894 15 C -0.584 4.584 16 H 0.100 0.900 17 C -0.124 4.124 18 N -0.518 5.518 19 Si 0.698 3.302 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.188 1.188 23 C 0.034 3.966 24 C -0.153 4.153 25 N -0.131 5.131 26 C -0.064 4.064 27 C -0.203 4.203 28 C -0.195 4.195 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.120 0.880 34 H 0.233 0.767 35 H 0.192 0.808 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.159 0.841 43 H 0.125 0.875 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -23.371 -2.903 -13.592 27.192 hybrid contribution -0.536 -1.696 0.019 1.778 sum -23.907 -4.599 -13.573 27.874 Atomic orbital electron populations 1.20336 0.83706 1.04893 1.04008 1.24896 0.97161 0.82599 1.03874 1.74358 0.96350 1.23646 1.19113 1.74354 1.12138 1.07702 1.16869 1.24730 0.86706 0.92528 1.06581 1.19332 0.88936 0.97166 0.85374 1.45681 1.28981 1.56758 1.07020 1.17217 0.78702 0.76323 0.87692 1.90715 1.53732 1.52631 1.45801 1.19573 1.03835 1.18162 0.92896 1.23711 0.99557 0.99657 0.89678 1.77157 0.98235 1.12487 1.23142 1.48920 1.19103 1.36826 1.04051 1.20162 0.85609 0.93281 0.90338 1.21085 1.02815 1.00480 1.34036 0.89997 1.24797 0.94862 0.97589 0.95128 1.69862 1.09428 1.35330 1.37170 0.86905 0.79087 0.84550 0.79625 1.19492 1.20348 1.18817 1.21470 0.94878 0.94910 0.85308 1.20605 0.96608 1.00211 0.97838 1.45555 1.06329 1.07111 1.54101 1.22098 1.07226 0.79428 0.97620 1.23456 0.93115 1.03687 1.00091 1.23459 0.97441 1.00905 0.97739 0.89639 0.90016 0.88628 0.89622 0.87996 0.76717 0.80841 0.92727 0.93392 0.91943 0.89355 0.91091 0.88624 0.84090 0.87479 0.86443 0.86379 0.87436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.16 36.00 0.37 0.02 16 2 C 0.18 1.70 7.92 -154.99 -1.23 0.47 16 3 N -0.29 -3.90 12.21 32.79 0.40 -3.50 16 4 N -0.27 -3.80 12.21 32.80 0.40 -3.40 16 5 C 0.16 1.77 7.38 -154.98 -1.14 0.63 16 6 C 0.22 2.31 6.02 -5.19 -0.03 2.27 16 7 N -0.73 -8.49 5.40 -62.56 -0.34 -8.83 16 8 C 0.61 9.29 7.81 -12.52 -0.10 9.19 16 9 O -0.55 -9.58 14.84 5.28 0.08 -9.50 16 10 C -0.33 -5.64 6.13 -105.06 -0.64 -6.29 16 11 C 0.06 1.02 11.50 -16.98 -0.20 0.82 16 12 N -0.29 -6.00 12.50 30.86 0.39 -5.61 16 13 N -0.31 -6.71 3.56 -57.77 -0.21 -6.92 16 14 C 0.22 5.13 5.03 -5.19 -0.03 5.11 16 15 C -0.55 -14.83 9.94 -34.44 -0.34 -15.18 16 16 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 17 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 18 N -0.88 -25.73 13.96 55.43 0.77 -24.96 16 19 Si 0.87 19.54 27.47 -169.99 -4.67 14.87 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 23 C 0.17 3.29 7.01 -81.60 -0.57 2.72 16 24 C -0.09 -1.60 9.57 36.00 0.34 -1.25 16 25 N -0.44 -3.73 3.03 -103.62 -0.31 -4.04 16 26 C 0.04 0.21 6.07 -67.93 -0.41 -0.20 16 27 C -0.17 -0.55 9.07 -26.69 -0.24 -0.79 16 28 C -0.16 -0.79 10.44 -26.69 -0.28 -1.07 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.24 5.50 -51.93 -0.29 -0.05 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.80 7.95 -51.93 -0.41 0.38 16 33 H 0.10 1.19 8.14 -51.92 -0.42 0.76 16 34 H 0.40 4.18 7.35 -40.82 -0.30 3.88 16 35 H 0.17 2.12 7.50 -52.49 -0.39 1.72 16 36 H 0.05 1.25 7.20 -51.93 -0.37 0.88 16 37 H 0.05 1.00 6.44 -51.93 -0.33 0.67 16 38 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.07 1.12 7.05 -51.93 -0.37 0.75 16 41 H 0.10 1.51 6.50 -51.93 -0.34 1.17 16 42 H 0.14 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.11 0.39 6.89 -51.93 -0.36 0.03 16 44 H 0.12 0.17 8.14 -51.92 -0.42 -0.26 16 45 H 0.12 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.11 0.71 7.93 -51.93 -0.41 0.30 16 LS Contribution 389.14 15.07 5.86 5.86 Total: -1.00 -35.11 389.14 -8.35 -43.45 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.12 Total: 4.01 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -4.60 Total: -1.43 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: 1.10 Total: -57.27 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.08 Total: -9.50 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.67 Total: 14.87 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.11 -8.35 -43.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411987783.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.043 kcal (2) G-P(sol) polarization free energy of solvation -35.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds