Wall clock time and date at job start Wed Apr 1 2020 03:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38045 * 126.28765 * 2 1 4 4 C 1.47426 * 126.41991 * 359.96705 * 3 2 1 5 5 O 1.21602 * 120.00096 * 40.57990 * 4 3 2 6 6 N 1.34771 * 120.00246 * 220.58963 * 4 3 2 7 7 C 1.46930 * 120.62869 * 5.21379 * 6 4 3 8 8 C 1.53621 * 108.54253 * 126.37336 * 7 6 4 9 9 C 1.53034 * 109.24235 * 54.85830 * 8 7 6 10 10 C 1.50708 * 109.46151 * 178.49003 * 9 8 7 11 11 N 1.33242 * 125.52733 * 240.06744 * 10 9 8 12 12 C 1.30830 * 109.82572 * 179.97438 * 11 10 9 13 13 N 1.34426 * 108.08154 * 359.97438 * 12 11 10 14 14 H 0.96993 * 126.82453 * 179.97438 * 13 12 11 15 15 N 1.30710 * 125.52275 * 59.75742 * 10 9 8 16 16 C 1.53042 * 109.53916 * 298.50974 * 9 8 7 17 17 C 1.46922 * 120.63401 * 185.50211 * 6 4 3 18 18 C 1.41291 * 107.16912 * 179.97438 * 3 2 1 19 19 N 1.30448 * 108.02100 * 0.23060 * 18 3 2 20 20 N 1.34252 * 126.29062 * 179.97438 * 2 1 3 21 21 C 1.46499 * 125.75497 * 0.02562 * 20 2 1 22 22 C 1.50702 * 109.47192 * 89.99886 * 21 20 2 23 23 H 1.07995 * 120.00124 * 359.97438 * 22 21 20 24 24 C 1.37883 * 119.99800 * 179.97438 * 22 21 20 25 25 N 1.31509 * 119.99683 * 179.97438 * 24 22 21 26 26 Si 1.86806 * 119.99894 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.46792 * 90.00054 * 26 24 22 28 28 H 1.48499 * 109.46800 * 209.99704 * 26 24 22 29 29 H 1.48494 * 109.47197 * 330.00084 * 26 24 22 30 30 H 1.08994 * 109.47246 * 89.99591 * 1 2 3 31 31 H 1.08999 * 109.46954 * 210.00001 * 1 2 3 32 32 H 1.09000 * 109.47217 * 329.99499 * 1 2 3 33 33 H 1.09000 * 109.58801 * 246.20686 * 7 6 4 34 34 H 1.09000 * 109.58422 * 6.62874 * 7 6 4 35 35 H 1.08996 * 109.63539 * 294.86061 * 8 7 6 36 36 H 1.08999 * 109.45810 * 174.74175 * 8 7 6 37 37 H 1.08999 * 109.46546 * 58.53035 * 9 8 7 38 38 H 1.07998 * 125.95619 * 179.97438 * 12 11 10 39 39 H 1.09005 * 109.49694 * 301.41432 * 16 9 8 40 40 H 1.09001 * 109.52616 * 181.33648 * 16 9 8 41 41 H 1.09000 * 109.58704 * 353.36238 * 17 6 4 42 42 H 1.08995 * 109.59022 * 113.65195 * 17 6 4 43 43 H 1.07993 * 125.99234 * 179.97438 * 18 3 2 44 44 H 1.09006 * 109.47080 * 209.99370 * 21 20 2 45 45 H 1.08994 * 109.47332 * 329.99163 * 21 20 2 46 46 H 0.97006 * 119.99799 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8858 2.5203 -0.0007 5 8 0.9411 2.8634 0.6838 6 7 2.5321 3.4270 -0.7601 7 6 3.6005 3.0092 -1.6781 8 6 3.2741 3.5409 -3.0819 9 6 3.0630 5.0550 -3.0113 10 6 2.7789 5.5873 -4.3923 11 7 3.5097 6.4957 -5.0374 12 6 2.9864 6.7329 -6.2128 13 7 1.8904 5.9656 -6.3440 14 1 1.2962 5.9268 -7.1096 15 7 1.7788 5.2286 -5.1536 16 6 1.8792 5.3645 -2.0921 17 6 2.1860 4.8527 -0.6811 18 6 3.6590 0.6500 0.0006 19 7 3.6340 -0.6543 -0.0041 20 7 2.3016 -1.0821 0.0005 21 6 1.8500 -2.4758 0.0006 22 6 1.6957 -2.9539 -1.4202 23 1 1.9119 -2.2863 -2.2411 24 6 1.2784 -4.2437 -1.6720 25 7 1.1432 -4.6608 -2.9119 26 14 0.9051 -5.3986 -0.2520 27 1 -0.5259 -5.2737 0.1245 28 1 1.1884 -6.7970 -0.6638 29 1 1.7560 -5.0432 0.9119 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 4.5527 3.4192 -1.3414 34 1 3.6569 1.9209 -1.7019 35 1 2.3667 3.0640 -3.4524 36 1 4.1021 3.3200 -3.7555 37 1 3.9621 5.5290 -2.6175 38 1 3.3682 7.4245 -6.9491 39 1 0.9848 4.8703 -2.4718 40 1 1.7142 6.4414 -2.0606 41 1 1.3088 4.9812 -0.0471 42 1 3.0242 5.4096 -0.2624 43 1 4.5449 1.2677 0.0004 44 1 2.5846 -3.0957 0.5147 45 1 0.8913 -2.5470 0.5142 46 1 0.8493 -5.5681 -3.0891 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434202956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:04 Heat of formation + Delta-G solvation = 123.966297 kcal Electronic energy + Delta-G solvation = -29888.995940 eV Core-core repulsion = 25817.014540 eV Total energy + Delta-G solvation = -4071.981401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.41247 -40.95950 -39.47162 -37.27711 -34.15583 -33.74199 -32.40907 -32.14569 -31.63675 -30.91683 -30.76899 -27.93656 -26.90879 -25.75361 -23.64472 -23.32928 -22.83887 -22.16200 -20.87800 -20.14753 -19.42397 -18.66675 -18.35466 -17.21593 -16.95961 -15.95339 -15.65811 -15.42066 -15.28121 -15.09406 -14.75190 -14.56304 -14.12633 -14.07982 -13.74073 -13.54447 -13.35791 -12.86509 -12.63260 -12.45445 -12.40728 -12.35275 -12.20758 -12.07490 -11.59891 -11.54096 -11.32952 -11.22453 -11.04028 -10.83752 -10.78441 -10.38010 -10.32246 -10.30539 -10.24623 -9.87634 -9.77470 -9.42351 -8.84677 -8.61197 -8.54514 -7.88082 -6.32893 -4.37214 1.33237 2.23969 2.38162 2.60757 2.77063 3.02192 3.11182 3.18731 3.20061 3.35598 3.62301 3.79820 4.16180 4.33954 4.55093 4.67777 4.74830 4.92983 4.98788 5.06519 5.11469 5.16180 5.22268 5.35587 5.48559 5.56617 5.62173 5.63165 5.71129 5.80429 5.87109 5.92770 5.96011 6.00418 6.02256 6.11608 6.24139 6.26912 6.43177 6.46980 6.60735 6.68778 6.71615 7.06245 7.19363 7.59373 7.61964 7.79761 8.20503 8.31204 8.54674 8.70265 9.21464 10.79308 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013756 B = 0.002670 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.945567 B =10485.217484 C =11611.182353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.158 3.842 3 C -0.324 4.324 4 C 0.610 3.390 5 O -0.552 6.552 6 N -0.613 5.613 7 C 0.106 3.894 8 C -0.125 4.125 9 C 0.008 3.992 10 C 0.236 3.764 11 N -0.543 5.543 12 C 0.258 3.742 13 N -0.487 5.487 14 H 0.441 0.559 15 N -0.305 5.305 16 C -0.123 4.123 17 C 0.117 3.883 18 C 0.059 3.941 19 N -0.292 5.292 20 N -0.313 5.313 21 C 0.225 3.775 22 C -0.544 4.544 23 H 0.082 0.918 24 C 0.081 3.919 25 N -0.884 5.884 26 Si 0.872 3.128 27 H -0.270 1.270 28 H -0.279 1.279 29 H -0.263 1.263 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.221 0.779 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.179 0.821 44 H 0.055 0.945 45 H 0.047 0.953 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.061 22.687 -3.543 23.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.023 3.977 3 C -0.339 4.339 4 C 0.401 3.599 5 O -0.431 6.431 6 N -0.346 5.346 7 C -0.017 4.017 8 C -0.164 4.164 9 C -0.014 4.014 10 C -0.047 4.047 11 N -0.271 5.271 12 C -0.042 4.042 13 N -0.204 5.204 14 H 0.287 0.713 15 N -0.133 5.133 16 C -0.162 4.162 17 C -0.006 4.006 18 C -0.128 4.128 19 N -0.112 5.112 20 N -0.090 5.090 21 C 0.106 3.894 22 C -0.582 4.582 23 H 0.100 0.900 24 C -0.124 4.124 25 N -0.520 5.520 26 Si 0.697 3.303 27 H -0.195 1.195 28 H -0.204 1.204 29 H -0.187 1.187 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.238 0.762 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.114 0.886 42 H 0.085 0.915 43 H 0.196 0.804 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.980 21.064 -2.923 21.473 hybrid contribution -0.805 0.191 -0.589 1.016 sum 2.175 21.255 -3.512 21.653 Atomic orbital electron populations 1.20573 0.87091 1.04010 1.03902 1.21336 0.94714 0.86402 0.95288 1.19604 0.93331 0.92481 1.28525 1.17380 0.80797 0.83972 0.77759 1.90686 1.28587 1.80642 1.43162 1.47888 1.37973 1.06905 1.41869 1.22014 0.89675 1.02244 0.87797 1.22037 1.03472 0.93307 0.97594 1.19599 1.00097 0.96068 0.85596 1.24289 0.89545 0.93202 0.97681 1.70443 1.31471 1.19497 1.05684 1.26096 0.86364 0.95502 0.96212 1.48194 1.23678 1.32312 1.16265 0.71317 1.78089 1.23711 1.17987 0.93529 1.21948 0.97961 1.01447 0.94868 1.21496 1.02026 0.80669 0.96404 1.23772 0.96285 0.92318 1.00401 1.77150 0.98043 1.12302 1.23712 1.48837 1.02714 1.07406 1.50023 1.20136 0.95699 0.73433 1.00140 1.21092 1.47941 0.99131 0.90025 0.90030 1.24789 0.94312 0.97419 0.95837 1.69863 1.45254 1.18227 1.18667 0.86915 0.79528 0.81046 0.82773 1.19528 1.20382 1.18742 0.89767 0.90700 0.88975 0.91199 0.87855 0.90413 0.90518 0.88221 0.76233 0.90568 0.90767 0.88583 0.91461 0.80369 0.92741 0.93492 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.71 9.92 36.01 0.36 -1.35 16 2 C 0.16 3.16 7.00 -81.60 -0.57 2.59 16 3 C -0.32 -5.87 5.19 -105.07 -0.55 -6.41 16 4 C 0.61 10.24 7.43 -12.52 -0.09 10.15 16 5 O -0.55 -10.54 15.11 5.28 0.08 -10.47 16 6 N -0.61 -8.04 2.97 -173.77 -0.52 -8.55 16 7 C 0.11 1.19 5.52 -3.48 -0.02 1.17 16 8 C -0.12 -1.38 5.36 -26.39 -0.14 -1.53 16 9 C 0.01 0.08 2.62 -91.73 -0.24 -0.16 16 10 C 0.24 2.68 6.65 -156.85 -1.04 1.63 16 11 N -0.54 -5.71 11.19 -11.98 -0.13 -5.84 16 12 C 0.26 1.74 13.13 -90.66 -1.19 0.55 16 13 N -0.49 -3.63 7.45 29.53 0.22 -3.41 16 14 H 0.44 1.70 8.96 -182.34 -1.63 0.07 16 15 N -0.30 -3.57 12.80 32.42 0.41 -3.15 16 16 C -0.12 -1.25 5.34 -26.61 -0.14 -1.39 16 17 C 0.12 1.27 6.44 -3.71 -0.02 1.24 16 18 C 0.06 1.01 9.62 -16.98 -0.16 0.85 16 19 N -0.29 -6.14 12.50 30.86 0.39 -5.75 16 20 N -0.31 -6.88 3.56 -57.77 -0.21 -7.09 16 21 C 0.22 5.23 5.04 -5.19 -0.03 5.20 16 22 C -0.54 -14.78 9.94 -34.44 -0.34 -15.13 16 23 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 24 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 25 N -0.88 -25.76 13.96 55.43 0.77 -24.99 16 26 Si 0.87 19.78 27.47 -169.99 -4.67 15.11 16 27 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 31 H 0.07 1.24 7.05 -51.93 -0.37 0.88 16 32 H 0.09 1.55 6.74 -51.93 -0.35 1.20 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.10 1.36 4.77 -51.93 -0.25 1.11 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.22 0.32 8.06 -52.49 -0.42 -0.10 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.10 1.17 7.00 -51.93 -0.36 0.80 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.18 2.33 7.37 -52.49 -0.39 1.94 16 44 H 0.05 1.28 7.20 -51.93 -0.37 0.90 16 45 H 0.05 1.01 6.44 -51.93 -0.33 0.68 16 46 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 377.51 15.07 5.69 5.69 Total: -1.00 -35.87 377.51 -9.70 -45.57 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -7.45 Total: 3.35 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -4.28 Total: -0.47 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.94 Total: -58.79 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.67 Total: 15.11 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.87 -9.70 -45.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434202956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.535 kcal (2) G-P(sol) polarization free energy of solvation -35.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds