Wall clock time and date at job start Wed Apr 1 2020 03:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38045 * 126.28765 * 2 1 4 4 C 1.47426 * 126.41991 * 359.96705 * 3 2 1 5 5 O 1.21602 * 120.00096 * 40.57990 * 4 3 2 6 6 N 1.34771 * 120.00246 * 220.58963 * 4 3 2 7 7 C 1.46930 * 120.62869 * 5.21379 * 6 4 3 8 8 C 1.53621 * 108.54253 * 126.37336 * 7 6 4 9 9 C 1.53034 * 109.24235 * 54.85830 * 8 7 6 10 10 C 1.50708 * 109.46151 * 178.49003 * 9 8 7 11 11 N 1.33242 * 125.52733 * 240.06744 * 10 9 8 12 12 C 1.30830 * 109.82572 * 179.97438 * 11 10 9 13 13 N 1.34426 * 108.08154 * 359.97438 * 12 11 10 14 14 H 0.96993 * 126.82453 * 179.97438 * 13 12 11 15 15 N 1.30710 * 125.52275 * 59.75742 * 10 9 8 16 16 C 1.53042 * 109.53916 * 298.50974 * 9 8 7 17 17 C 1.46922 * 120.63401 * 185.50211 * 6 4 3 18 18 C 1.41291 * 107.16912 * 179.97438 * 3 2 1 19 19 N 1.30448 * 108.02100 * 0.23060 * 18 3 2 20 20 N 1.34252 * 126.29062 * 179.97438 * 2 1 3 21 21 C 1.46499 * 125.75497 * 0.02562 * 20 2 1 22 22 C 1.50702 * 109.47192 * 89.99886 * 21 20 2 23 23 H 1.07995 * 120.00124 * 359.97438 * 22 21 20 24 24 C 1.37883 * 119.99800 * 179.97438 * 22 21 20 25 25 N 1.31509 * 119.99683 * 179.97438 * 24 22 21 26 26 Si 1.86806 * 119.99894 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.46792 * 90.00054 * 26 24 22 28 28 H 1.48499 * 109.46800 * 209.99704 * 26 24 22 29 29 H 1.48494 * 109.47197 * 330.00084 * 26 24 22 30 30 H 1.08994 * 109.47246 * 89.99591 * 1 2 3 31 31 H 1.08999 * 109.46954 * 210.00001 * 1 2 3 32 32 H 1.09000 * 109.47217 * 329.99499 * 1 2 3 33 33 H 1.09000 * 109.58801 * 246.20686 * 7 6 4 34 34 H 1.09000 * 109.58422 * 6.62874 * 7 6 4 35 35 H 1.08996 * 109.63539 * 294.86061 * 8 7 6 36 36 H 1.08999 * 109.45810 * 174.74175 * 8 7 6 37 37 H 1.08999 * 109.46546 * 58.53035 * 9 8 7 38 38 H 1.07998 * 125.95619 * 179.97438 * 12 11 10 39 39 H 1.09005 * 109.49694 * 301.41432 * 16 9 8 40 40 H 1.09001 * 109.52616 * 181.33648 * 16 9 8 41 41 H 1.09000 * 109.58704 * 353.36238 * 17 6 4 42 42 H 1.08995 * 109.59022 * 113.65195 * 17 6 4 43 43 H 1.07993 * 125.99234 * 179.97438 * 18 3 2 44 44 H 1.09006 * 109.47080 * 209.99370 * 21 20 2 45 45 H 1.08994 * 109.47332 * 329.99163 * 21 20 2 46 46 H 0.97006 * 119.99799 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8858 2.5203 -0.0007 5 8 0.9411 2.8634 0.6838 6 7 2.5321 3.4270 -0.7601 7 6 3.6005 3.0092 -1.6781 8 6 3.2741 3.5409 -3.0819 9 6 3.0630 5.0550 -3.0113 10 6 2.7789 5.5873 -4.3923 11 7 3.5097 6.4957 -5.0374 12 6 2.9864 6.7329 -6.2128 13 7 1.8904 5.9656 -6.3440 14 1 1.2962 5.9268 -7.1096 15 7 1.7788 5.2286 -5.1536 16 6 1.8792 5.3645 -2.0921 17 6 2.1860 4.8527 -0.6811 18 6 3.6590 0.6500 0.0006 19 7 3.6340 -0.6543 -0.0041 20 7 2.3016 -1.0821 0.0005 21 6 1.8500 -2.4758 0.0006 22 6 1.6957 -2.9539 -1.4202 23 1 1.9119 -2.2863 -2.2411 24 6 1.2784 -4.2437 -1.6720 25 7 1.1432 -4.6608 -2.9119 26 14 0.9051 -5.3986 -0.2520 27 1 -0.5259 -5.2737 0.1245 28 1 1.1884 -6.7970 -0.6638 29 1 1.7560 -5.0432 0.9119 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 4.5527 3.4192 -1.3414 34 1 3.6569 1.9209 -1.7019 35 1 2.3667 3.0640 -3.4524 36 1 4.1021 3.3200 -3.7555 37 1 3.9621 5.5290 -2.6175 38 1 3.3682 7.4245 -6.9491 39 1 0.9848 4.8703 -2.4718 40 1 1.7142 6.4414 -2.0606 41 1 1.3088 4.9812 -0.0471 42 1 3.0242 5.4096 -0.2624 43 1 4.5449 1.2677 0.0004 44 1 2.5846 -3.0957 0.5147 45 1 0.8913 -2.5470 0.5142 46 1 0.8493 -5.5681 -3.0891 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434202956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:03 Heat of formation + Delta-G solvation = 99.519213 kcal Electronic energy + Delta-G solvation = -29890.056045 eV Core-core repulsion = 25817.014540 eV Total energy + Delta-G solvation = -4073.041506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.08476 -42.41532 -40.65376 -38.40662 -35.80420 -34.93015 -33.97131 -33.12832 -32.92013 -32.08961 -31.58263 -29.64167 -28.36014 -26.79025 -25.13728 -24.16599 -24.08984 -23.21275 -21.96114 -21.28543 -20.62505 -19.64869 -19.28116 -19.26266 -18.27754 -17.17998 -16.83174 -16.55213 -16.36714 -16.12226 -15.92187 -15.65013 -15.56403 -15.23494 -15.00506 -14.75920 -14.55242 -14.44114 -14.01916 -13.87965 -13.76589 -13.60007 -13.26005 -13.12566 -13.08145 -13.00370 -12.58043 -12.46490 -12.26023 -12.10707 -11.89735 -11.83715 -11.78128 -11.64275 -11.03725 -11.02439 -10.91719 -10.81738 -10.60336 -10.21503 -9.68064 -9.35098 -8.43066 -6.54460 0.70343 0.74217 1.33750 1.34411 1.35269 1.44957 1.63304 1.85814 1.91356 2.02230 2.24407 2.37059 2.89408 3.12007 3.56732 3.65792 3.71170 3.86975 3.97403 4.01662 4.08201 4.13527 4.18913 4.35374 4.38931 4.39437 4.48372 4.51511 4.64628 4.70984 4.72934 4.82343 4.87661 4.88146 4.94967 5.01414 5.10428 5.12466 5.18189 5.28705 5.32273 5.46248 5.58651 5.71344 5.84435 6.21981 6.27407 6.42803 6.48358 6.79913 7.09314 7.13513 7.26730 8.73274 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013756 B = 0.002670 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.945567 B =10485.217484 C =11611.182353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.138 3.862 3 C -0.323 4.323 4 C 0.608 3.392 5 O -0.581 6.581 6 N -0.604 5.604 7 C 0.106 3.894 8 C -0.117 4.117 9 C 0.013 3.987 10 C 0.225 3.775 11 N -0.574 5.574 12 C 0.274 3.726 13 N -0.481 5.481 14 H 0.455 0.545 15 N -0.350 5.350 16 C -0.112 4.112 17 C 0.117 3.883 18 C 0.080 3.920 19 N -0.330 5.330 20 N -0.337 5.337 21 C 0.234 3.766 22 C -0.550 4.550 23 H 0.028 0.972 24 C 0.024 3.976 25 N -0.935 5.935 26 Si 0.946 3.054 27 H -0.253 1.253 28 H -0.277 1.277 29 H -0.243 1.243 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.045 0.955 36 H 0.083 0.917 37 H 0.119 0.881 38 H 0.272 0.728 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.222 0.778 44 H 0.056 0.944 45 H 0.069 0.931 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.204 24.629 -2.611 25.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.003 3.997 3 C -0.339 4.339 4 C 0.398 3.602 5 O -0.462 6.462 6 N -0.336 5.336 7 C -0.016 4.016 8 C -0.156 4.156 9 C -0.008 4.008 10 C -0.058 4.058 11 N -0.303 5.303 12 C -0.024 4.024 13 N -0.200 5.200 14 H 0.304 0.696 15 N -0.180 5.180 16 C -0.151 4.151 17 C -0.005 4.005 18 C -0.106 4.106 19 N -0.150 5.150 20 N -0.114 5.114 21 C 0.114 3.886 22 C -0.588 4.588 23 H 0.046 0.954 24 C -0.176 4.176 25 N -0.573 5.573 26 Si 0.767 3.233 27 H -0.177 1.177 28 H -0.202 1.202 29 H -0.167 1.167 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.101 0.899 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.137 0.863 38 H 0.288 0.712 39 H 0.067 0.933 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.239 0.761 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.129 23.055 -2.028 23.509 hybrid contribution -1.106 -0.197 -1.096 1.570 sum 3.023 22.858 -3.125 23.267 Atomic orbital electron populations 1.20577 0.86023 1.04745 1.03731 1.21841 0.95775 0.86635 0.95418 1.19890 0.93588 0.93026 1.27368 1.17246 0.80853 0.83852 0.78275 1.90669 1.29786 1.80951 1.44766 1.47930 1.37487 1.07453 1.40708 1.22147 0.90644 1.01268 0.87578 1.21919 1.02172 0.94114 0.97435 1.19576 1.00603 0.95085 0.85570 1.24414 0.89711 0.93617 0.98045 1.70435 1.32455 1.20186 1.07263 1.27067 0.85000 0.94545 0.95828 1.48144 1.24319 1.31827 1.15727 0.69639 1.78003 1.24869 1.19856 0.95277 1.21825 0.96984 1.02001 0.94309 1.21684 1.02841 0.79308 0.96646 1.24423 0.97354 0.91399 0.97414 1.77090 0.97984 1.14217 1.25722 1.48693 1.03419 1.07159 1.52157 1.19878 0.96696 0.74611 0.97425 1.21178 1.47967 0.98783 0.90911 0.95368 1.25785 0.93695 0.99202 0.98923 1.70020 1.46717 1.19052 1.21495 0.85738 0.80410 0.77924 0.79181 1.17730 1.20239 1.16665 0.90320 0.89813 0.88293 0.87234 0.89872 0.93602 0.89844 0.86290 0.71237 0.93276 0.89186 0.89963 0.88100 0.76144 0.92638 0.91351 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.31 9.92 71.24 0.71 -2.61 16 2 C 0.14 5.58 7.00 42.14 0.30 5.88 16 3 C -0.32 -11.66 5.19 -20.15 -0.10 -11.76 16 4 C 0.61 20.10 7.43 86.66 0.64 20.74 16 5 O -0.58 -22.11 15.11 -4.04 -0.06 -22.17 16 6 N -0.60 -15.03 2.97 -821.95 -2.44 -17.46 16 7 C 0.11 2.20 5.52 86.51 0.48 2.68 16 8 C -0.12 -2.53 5.36 30.81 0.17 -2.36 16 9 C 0.01 0.24 2.62 -11.51 -0.03 0.21 16 10 C 0.22 4.89 6.65 138.63 0.92 5.81 16 11 N -0.57 -10.93 11.19 -191.80 -2.15 -13.08 16 12 C 0.27 2.98 13.13 180.36 2.37 5.35 16 13 N -0.48 -6.52 7.45 -60.49 -0.45 -6.97 16 14 H 0.46 2.91 8.96 -213.10 -1.91 1.00 16 15 N -0.35 -8.15 12.80 -51.33 -0.66 -8.80 16 16 C -0.11 -2.16 5.34 30.67 0.16 -2.00 16 17 C 0.12 2.32 6.44 86.36 0.56 2.88 16 18 C 0.08 2.69 9.62 85.65 0.82 3.52 16 19 N -0.33 -13.93 12.50 -56.28 -0.70 -14.63 16 20 N -0.34 -15.05 3.56 -336.70 -1.20 -16.25 16 21 C 0.23 10.95 5.04 85.63 0.43 11.38 16 22 C -0.55 -31.05 9.94 25.60 0.25 -30.79 16 23 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 24 C 0.02 1.34 5.47 84.66 0.46 1.81 16 25 N -0.93 -56.37 13.96 21.45 0.30 -56.07 16 26 Si 0.95 40.58 27.47 68.60 1.88 42.46 16 27 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 28 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 29 H -0.24 -9.61 6.54 99.48 0.65 -8.96 16 30 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.08 2.78 7.05 -2.39 -0.02 2.76 16 32 H 0.10 3.37 6.74 -2.39 -0.02 3.35 16 33 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 2.11 4.77 -2.39 -0.01 2.09 16 35 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.27 -0.36 8.06 -2.91 -0.02 -0.38 16 39 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.08 1.92 7.00 -2.39 -0.02 1.90 16 42 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.22 5.13 7.37 -2.91 -0.02 5.11 16 44 H 0.06 2.57 7.20 -2.38 -0.02 2.55 16 45 H 0.07 2.88 6.44 -2.39 -0.02 2.87 16 46 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -82.84 377.51 1.73 -81.11 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -0.93 Total: 21.14 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 8.14 Total: 10.73 kcal Atomic # 7 Polarization: -125.98 SS G_CDS: -7.29 Total: -133.27 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.06 Total: -22.17 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 1.88 Total: 42.46 kcal Total: -82.84 1.73 -81.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434202956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.629 kcal (2) G-P(sol) polarization free energy of solvation -82.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds