Wall clock time and date at job start Wed Apr 1 2020 03:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30290 * 126.35071 * 2 1 4 4 N 1.28529 * 110.05426 * 180.02562 * 3 2 1 5 5 C 1.31210 * 109.85839 * 359.74470 * 4 3 2 6 6 N 1.38585 * 126.47292 * 180.25901 * 5 4 3 7 7 C 1.46905 * 110.99738 * 251.07982 * 6 5 4 8 8 C 1.46896 * 110.99950 * 15.03421 * 6 5 4 9 9 H 1.08999 * 109.47472 * 54.99681 * 8 6 5 10 10 C 1.53005 * 109.46987 * 295.00063 * 8 6 5 11 11 C 1.50701 * 109.47394 * 175.00151 * 8 6 5 12 12 H 1.08006 * 119.99297 * 0.02562 * 11 8 6 13 13 C 1.37875 * 120.00089 * 179.97438 * 11 8 6 14 14 N 1.31507 * 120.00093 * 0.02562 * 13 11 8 15 15 Si 1.86809 * 119.99720 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47173 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.46872 * 120.00163 * 15 13 11 18 18 H 1.48496 * 109.46998 * 240.00049 * 15 13 11 19 19 N 1.36454 * 107.05724 * 0.40059 * 5 4 3 20 20 C 1.46493 * 127.13704 * 179.87309 * 19 5 4 21 21 C 1.50700 * 109.47052 * 90.85884 * 20 19 5 22 22 C 1.38624 * 120.32264 * 268.76300 * 21 20 19 23 23 C 1.38594 * 118.48888 * 179.73656 * 22 21 20 24 24 C 1.39302 * 119.05998 * 0.53427 * 23 22 21 25 25 C 1.48169 * 119.72633 * 179.74946 * 24 23 22 26 26 N 1.34776 * 120.00112 * 179.97438 * 25 24 23 27 27 O 1.21507 * 119.99774 * 359.97438 * 25 24 23 28 28 N 1.32718 * 120.55147 * 359.72686 * 24 23 22 29 29 C 1.31525 * 121.64403 * 359.97438 * 28 24 23 30 30 H 1.09004 * 109.47408 * 269.96070 * 1 2 3 31 31 H 1.09006 * 109.46765 * 29.95859 * 1 2 3 32 32 H 1.09000 * 109.47638 * 149.95964 * 1 2 3 33 33 H 1.08996 * 109.47222 * 56.85584 * 7 6 5 34 34 H 1.09005 * 109.46499 * 176.85185 * 7 6 5 35 35 H 1.08998 * 109.47346 * 296.85378 * 7 6 5 36 36 H 1.09000 * 109.46941 * 180.02562 * 10 8 6 37 37 H 1.08994 * 109.47115 * 299.99476 * 10 8 6 38 38 H 1.08997 * 109.46989 * 60.00425 * 10 8 6 39 39 H 0.97007 * 120.00317 * 179.97438 * 14 13 11 40 40 H 1.09001 * 109.47476 * 330.85851 * 20 19 5 41 41 H 1.09001 * 109.47260 * 210.85624 * 20 19 5 42 42 H 1.08004 * 120.75738 * 359.97438 * 22 21 20 43 43 H 1.08007 * 120.47061 * 180.29204 * 23 22 21 44 44 H 0.97001 * 119.99907 * 359.97438 * 26 25 24 45 45 H 0.96997 * 120.00365 * 180.02562 * 26 25 24 46 46 H 1.07998 * 119.54682 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5129 0.6887 -0.0005 5 6 3.5944 -0.6209 0.0046 6 7 4.7579 -1.3738 0.0108 7 6 4.9619 -2.0380 -1.2836 8 6 5.9184 -0.5466 0.3668 9 1 5.7332 -0.0517 1.3201 10 6 6.1459 0.5072 -0.7190 11 6 7.1411 -1.4199 0.4832 12 1 7.0637 -2.4831 0.3097 13 6 8.3585 -0.8614 0.8103 14 7 8.4527 0.4332 1.0212 15 14 9.8739 -1.9441 0.9554 16 1 9.5038 -3.3541 0.6724 17 1 10.8978 -1.4959 -0.0223 18 1 10.4248 -1.8428 2.3306 19 7 2.3173 -1.1014 -0.0006 20 6 1.9008 -2.5059 -0.0004 21 6 1.7311 -2.9793 1.4203 22 6 2.7922 -3.5626 2.0951 23 6 2.5955 -3.9792 3.4022 24 6 1.3420 -3.8086 3.9854 25 6 1.1138 -4.2537 5.3801 26 7 -0.0966 -4.0908 5.9500 27 8 2.0180 -4.7657 6.0100 28 7 0.3506 -3.2501 3.3024 29 6 0.5115 -2.8405 2.0629 30 1 -0.3634 -0.0007 1.0277 31 1 -0.3633 0.8904 -0.5132 32 1 -0.3634 -0.8896 -0.5144 33 1 4.9802 -1.2905 -2.0766 34 1 5.9095 -2.5766 -1.2701 35 1 4.1476 -2.7397 -1.4643 36 1 7.0073 1.1207 -0.4550 37 1 6.3312 0.0124 -1.6723 38 1 5.2616 1.1389 -0.8031 39 1 9.3091 0.8261 1.2517 40 1 2.6603 -3.1102 -0.4964 41 1 0.9542 -2.6042 -0.5316 42 1 3.7516 -3.6860 1.6145 43 1 3.4016 -4.4334 3.9595 44 1 -0.8183 -3.6818 5.4472 45 1 -0.2459 -4.3819 6.8631 46 1 -0.3186 -2.3903 1.5389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001454751880.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:38 Heat of formation + Delta-G solvation = 101.742278 kcal Electronic energy + Delta-G solvation = -30635.303314 eV Core-core repulsion = 26562.358207 eV Total energy + Delta-G solvation = -4072.945107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.61239 -40.83328 -39.04459 -37.38191 -35.61827 -34.02190 -32.95303 -32.60368 -31.76972 -31.35470 -28.77711 -27.82824 -27.17042 -25.24646 -25.01577 -24.19194 -23.54546 -21.72686 -21.25722 -20.39182 -19.53231 -18.49054 -17.44168 -16.96850 -16.59908 -16.21715 -16.10611 -15.56411 -15.26983 -15.22164 -15.07871 -14.66487 -14.30272 -14.01914 -13.71298 -13.56331 -13.42601 -13.28892 -13.17293 -12.75594 -12.60195 -12.40026 -12.20382 -11.62325 -11.43626 -11.23085 -10.96129 -10.77367 -10.67618 -10.49240 -10.24707 -10.15890 -10.08480 -10.04975 -9.97763 -9.78923 -9.70873 -9.39578 -8.90699 -8.80622 -8.43323 -7.50977 -6.06125 -4.14008 0.26717 0.99274 2.11180 2.35105 2.72670 3.10586 3.26393 3.33453 3.34673 3.36483 3.62353 3.89559 4.26189 4.30293 4.30583 4.54312 4.54881 4.61403 4.75166 4.87107 4.94255 5.06589 5.11365 5.25732 5.38521 5.44252 5.55723 5.64952 5.81985 5.82480 5.91682 6.00542 6.13567 6.25032 6.29009 6.43945 6.46484 6.78354 6.94417 6.97904 7.11880 7.29443 7.42534 7.44858 7.62599 7.70574 7.93001 7.95679 8.28129 8.42129 8.87643 9.29333 9.51047 10.99960 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009219 B = 0.003927 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.555423 B = 7129.254128 C = 9320.489654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.149 3.851 3 N -0.289 5.289 4 N -0.310 5.310 5 C 0.385 3.615 6 N -0.457 5.457 7 C 0.034 3.966 8 C 0.230 3.770 9 H 0.047 0.953 10 C -0.179 4.179 11 C -0.515 4.515 12 H 0.064 0.936 13 C 0.065 3.935 14 N -0.883 5.883 15 Si 0.898 3.102 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 N -0.484 5.484 20 C 0.157 3.843 21 C -0.139 4.139 22 C -0.042 4.042 23 C -0.106 4.106 24 C 0.075 3.925 25 C 0.579 3.421 26 N -0.837 5.837 27 O -0.533 6.533 28 N -0.462 5.462 29 C 0.114 3.886 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.097 0.903 35 H 0.044 0.956 36 H 0.087 0.913 37 H 0.020 0.980 38 H 0.053 0.947 39 H 0.262 0.738 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.157 0.843 43 H 0.153 0.847 44 H 0.411 0.589 45 H 0.404 0.596 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.463 -9.691 -0.567 22.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.118 4.118 3 N -0.128 5.128 4 N -0.153 5.153 5 C 0.029 3.971 6 N -0.182 5.182 7 C -0.113 4.113 8 C 0.126 3.874 9 H 0.065 0.935 10 C -0.239 4.239 11 C -0.553 4.553 12 H 0.082 0.918 13 C -0.138 4.138 14 N -0.520 5.520 15 Si 0.726 3.274 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 N -0.181 5.181 20 C 0.033 3.967 21 C -0.143 4.143 22 C -0.068 4.068 23 C -0.126 4.126 24 C -0.063 4.063 25 C 0.362 3.638 26 N -0.400 5.400 27 O -0.408 6.408 28 N -0.173 5.173 29 C -0.046 4.046 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.116 0.884 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.039 0.961 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.174 0.826 43 H 0.171 0.829 44 H 0.242 0.758 45 H 0.235 0.765 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -20.023 -8.683 0.533 21.831 hybrid contribution 1.068 -1.300 -0.642 1.801 sum -18.955 -9.983 -0.109 21.423 Atomic orbital electron populations 1.20119 0.84501 1.03853 1.03326 1.24558 0.96154 0.82790 1.08288 1.73992 0.97268 1.24263 1.17274 1.74901 1.10127 1.07486 1.22833 1.23278 0.84863 0.89363 0.99569 1.59431 1.00461 1.29902 1.28361 1.22394 1.02570 0.97856 0.88498 1.19348 0.83248 0.89510 0.95265 0.93501 1.22557 1.03165 1.00709 0.97446 1.21038 0.91753 0.94053 1.48476 0.91780 1.24888 0.98835 0.95013 0.95085 1.69930 1.25232 1.10151 1.46732 0.86453 0.82751 0.80500 0.77740 1.19735 1.21050 1.20963 1.46266 1.06394 1.06938 1.58523 1.20596 1.03207 0.79823 0.93097 1.21203 0.95435 0.99949 0.97669 1.21814 0.99303 0.92200 0.93527 1.22211 0.97540 0.97659 0.95233 1.21070 0.91275 0.99308 0.94680 1.17872 0.82807 0.77916 0.85197 1.43620 1.13291 1.64584 1.18494 1.90852 1.42947 1.43676 1.63356 1.67500 1.32529 1.09103 1.08191 1.22596 0.96174 0.95722 0.90143 0.90248 0.89040 0.91029 0.94676 0.88424 0.93741 0.89400 0.96102 0.92887 0.92800 0.87118 0.87873 0.82551 0.82950 0.75849 0.76461 0.82169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.51 10.08 36.01 0.36 -0.15 16 2 C 0.15 2.21 8.07 -154.02 -1.24 0.97 16 3 N -0.29 -5.68 12.18 32.99 0.40 -5.28 16 4 N -0.31 -6.89 8.95 30.31 0.27 -6.62 16 5 C 0.38 7.47 6.67 -318.88 -2.13 5.34 16 6 N -0.46 -9.17 4.77 -176.08 -0.84 -10.01 16 7 C 0.03 0.58 8.58 60.07 0.52 1.10 16 8 C 0.23 5.71 2.09 -68.86 -0.14 5.57 16 9 H 0.05 1.36 8.11 -51.93 -0.42 0.93 16 10 C -0.18 -4.49 8.27 37.16 0.31 -4.18 16 11 C -0.51 -13.31 7.84 -34.44 -0.27 -13.58 16 12 H 0.06 1.59 6.79 -52.48 -0.36 1.24 16 13 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 14 N -0.88 -24.98 11.32 55.43 0.63 -24.35 16 15 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 N -0.48 -7.09 2.79 -115.37 -0.32 -7.41 16 20 C 0.16 1.56 6.12 -5.20 -0.03 1.53 16 21 C -0.14 -1.49 5.49 -104.36 -0.57 -2.06 16 22 C -0.04 -0.52 9.84 -39.31 -0.39 -0.90 16 23 C -0.11 -1.34 9.63 -39.05 -0.38 -1.72 16 24 C 0.07 0.92 6.75 -83.01 -0.56 0.36 16 25 C 0.58 7.10 8.08 -12.18 -0.10 7.00 16 26 N -0.84 -6.77 8.86 30.60 0.27 -6.50 16 27 O -0.53 -8.32 17.16 5.36 0.09 -8.23 16 28 N -0.46 -4.98 9.54 -9.80 -0.09 -5.07 16 29 C 0.11 1.09 10.86 -17.57 -0.19 0.90 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.40 7.29 -51.93 -0.38 0.02 16 33 H 0.03 0.63 6.68 -51.93 -0.35 0.28 16 34 H 0.10 1.74 6.34 -51.93 -0.33 1.41 16 35 H 0.04 0.59 5.99 -51.93 -0.31 0.27 16 36 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 37 H 0.02 0.48 6.55 -51.93 -0.34 0.14 16 38 H 0.05 1.32 5.38 -51.93 -0.28 1.04 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.11 1.06 5.83 -51.93 -0.30 0.76 16 41 H 0.10 0.64 7.24 -51.93 -0.38 0.27 16 42 H 0.16 1.97 8.06 -52.48 -0.42 1.55 16 43 H 0.15 1.93 7.64 -52.48 -0.40 1.53 16 44 H 0.41 2.64 8.16 -40.82 -0.33 2.31 16 45 H 0.40 2.50 8.93 -40.82 -0.36 2.14 16 46 H 0.16 1.02 7.88 -52.49 -0.41 0.61 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -34.98 377.66 -9.50 -44.49 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -5.67 Total: 5.85 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -4.91 Total: 1.82 kcal Atomic # 7 Polarization: -65.56 SS G_CDS: 0.32 Total: -65.25 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.98 -9.50 -44.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454751880.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.229 kcal (2) G-P(sol) polarization free energy of solvation -34.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds