Wall clock time and date at job start Wed Apr 1 2020 03:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35244 * 126.07052 * 2 1 4 4 C 1.40401 * 107.86868 * 179.97438 * 3 2 1 5 5 N 1.40186 * 125.97372 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99952 * 359.97438 * 5 4 3 7 7 O 1.21599 * 119.99803 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99733 * 179.97438 * 6 5 4 9 9 C 1.40839 * 119.99833 * 180.02562 * 8 6 5 10 10 C 1.40443 * 126.14104 * 0.02724 * 9 8 6 11 11 N 1.31048 * 108.39389 * 179.97438 * 10 9 8 12 12 N 1.39603 * 108.27927 * 359.96688 * 11 10 9 13 13 C 1.35095 * 126.14600 * 179.71474 * 9 8 6 14 14 C 1.50849 * 127.98038 * 0.79533 * 13 9 8 15 15 C 1.53452 * 108.18749 * 163.77258 * 14 13 9 16 16 C 1.53140 * 109.23843 * 48.42232 * 15 14 13 17 17 C 1.46583 * 127.72196 * 180.12854 * 12 11 10 18 18 N 1.31214 * 108.05413 * 359.97438 * 4 3 2 19 19 N 1.34965 * 126.06947 * 179.97438 * 2 1 3 20 20 C 1.46502 * 125.97717 * 0.06290 * 19 2 1 21 21 C 1.50704 * 109.47024 * 269.99937 * 20 19 2 22 22 H 1.08001 * 120.00078 * 0.02562 * 21 20 19 23 23 C 1.37876 * 119.99905 * 179.97438 * 21 20 19 24 24 N 1.31513 * 119.99956 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00006 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46817 * 60.00853 * 25 23 21 27 27 H 1.48501 * 109.46969 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47315 * 300.00562 * 25 23 21 29 29 H 1.08998 * 109.47088 * 90.02610 * 1 2 3 30 30 H 1.09002 * 109.47167 * 210.02533 * 1 2 3 31 31 H 1.08997 * 109.47064 * 330.02489 * 1 2 3 32 32 H 1.07997 * 126.06710 * 359.97438 * 3 2 1 33 33 H 0.97004 * 119.99812 * 179.97438 * 5 4 3 34 34 H 0.97003 * 120.00032 * 0.02562 * 8 6 5 35 35 H 1.07997 * 125.80438 * 359.97050 * 10 9 8 36 36 H 1.08999 * 109.88720 * 43.98841 * 14 13 9 37 37 H 1.09001 * 109.51260 * 283.33932 * 14 13 9 38 38 H 1.08996 * 109.51191 * 288.49341 * 15 14 13 39 39 H 1.09002 * 109.51195 * 168.34873 * 15 14 13 40 40 H 1.08999 * 109.44355 * 170.25308 * 16 15 14 41 41 H 1.09001 * 109.44079 * 50.34544 * 16 15 14 42 42 H 1.08996 * 109.58806 * 282.46330 * 17 12 11 43 43 H 1.08995 * 109.58522 * 42.75413 * 17 12 11 44 44 H 1.08995 * 109.46698 * 30.00492 * 20 19 2 45 45 H 1.08997 * 109.46975 * 150.00452 * 20 19 2 46 46 H 0.96994 * 120.00425 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 0.0006 5 7 4.7736 1.4751 0.0003 6 6 4.6369 2.8159 -0.0012 7 8 3.5275 3.3139 -0.0027 8 7 5.7297 3.6047 -0.0010 9 6 5.5868 5.0059 -0.0020 10 6 4.3744 5.7148 -0.0027 11 7 4.6451 6.9970 -0.0030 12 7 6.0326 7.1516 -0.0017 13 6 6.5912 5.9093 0.0036 14 6 8.0765 5.6462 -0.0046 15 6 8.7909 6.9450 -0.4014 16 6 8.2346 8.1021 0.4333 17 6 6.7956 8.4032 0.0012 18 7 3.6336 -0.6575 0.0015 19 7 2.3016 -1.0909 0.0005 20 6 1.8500 -2.4846 -0.0002 21 6 1.6939 -2.9628 1.4204 22 1 1.9091 -2.2952 2.2416 23 6 1.2754 -4.2522 1.6717 24 7 1.0128 -5.0650 0.6717 25 14 1.0812 -4.8447 3.4326 26 1 0.0796 -3.9998 4.1315 27 1 0.6236 -6.2574 3.4319 28 1 2.3864 -4.7479 4.1342 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5134 32 1 1.9720 2.1211 -0.0004 33 1 5.6586 1.0778 0.0011 34 1 6.6146 3.2075 -0.0001 35 1 3.3869 5.2776 -0.0030 36 1 8.3103 4.8626 -0.7253 37 1 8.3973 5.3391 0.9909 38 1 8.6215 7.1450 -1.4594 39 1 9.8602 6.8436 -0.2160 40 1 8.8517 8.9878 0.2825 41 1 8.2467 7.8272 1.4881 42 1 6.7973 8.8323 -1.0007 43 1 6.3414 9.1063 0.6992 44 1 0.8919 -2.5558 -0.5150 45 1 2.5851 -3.1045 -0.5134 46 1 0.7187 -5.9722 0.8485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001476352012.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:41 Heat of formation + Delta-G solvation = 105.077108 kcal Electronic energy + Delta-G solvation = -29002.684437 eV Core-core repulsion = 24929.883939 eV Total energy + Delta-G solvation = -4072.800498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.72043 -42.21359 -40.83948 -37.43733 -36.42505 -35.93219 -35.27878 -33.19442 -32.67425 -32.37181 -31.20683 -28.88623 -28.15666 -27.81582 -25.19870 -25.03678 -23.68037 -23.34913 -21.89595 -21.40387 -20.88893 -20.08745 -18.84462 -18.66290 -18.31820 -17.47660 -17.01394 -16.91539 -16.53522 -16.20907 -15.97597 -15.83132 -15.62468 -15.26742 -15.03548 -14.91727 -14.67020 -14.58445 -14.31344 -13.78427 -13.65872 -13.60092 -13.43293 -13.16045 -12.90796 -12.80125 -12.66129 -12.26356 -12.20915 -12.14502 -12.01795 -11.86432 -11.65312 -11.53835 -11.53102 -11.35560 -11.05721 -10.71636 -10.14734 -9.57206 -9.16203 -8.63879 -8.30218 -6.48321 0.75476 0.95691 1.05501 1.39214 1.40852 1.47463 1.50821 1.57881 1.91200 2.09077 2.36737 2.47483 2.98647 3.10014 3.51696 3.65781 3.80555 3.86004 3.87761 4.10544 4.17952 4.36060 4.42071 4.48377 4.49688 4.60840 4.75669 4.78823 4.79802 4.88838 4.89436 4.92664 5.01004 5.02090 5.06762 5.09679 5.14540 5.20443 5.33880 5.36836 5.55558 5.78687 5.81952 5.83935 5.98653 6.09251 6.29245 6.61807 6.65547 6.77807 7.12395 7.22413 7.37662 8.74806 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.024736 B = 0.001938 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.679709 B =14446.160371 C =14868.870556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.087 3.913 3 C -0.296 4.296 4 C 0.294 3.706 5 N -0.629 5.629 6 C 0.715 3.285 7 O -0.584 6.584 8 N -0.630 5.630 9 C 0.001 3.999 10 C 0.031 3.969 11 N -0.318 5.318 12 N -0.368 5.368 13 C 0.062 3.938 14 C -0.058 4.058 15 C -0.122 4.122 16 C -0.130 4.130 17 C 0.125 3.875 18 N -0.357 5.357 19 N -0.343 5.343 20 C 0.276 3.724 21 C -0.553 4.553 22 H 0.049 0.951 23 C 0.023 3.977 24 N -0.917 5.917 25 Si 0.970 3.030 26 H -0.266 1.266 27 H -0.273 1.273 28 H -0.275 1.275 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.168 0.832 33 H 0.424 0.576 34 H 0.425 0.575 35 H 0.189 0.811 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.119 0.881 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.051 0.949 45 H 0.025 0.975 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.768 25.857 -2.126 31.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 C -0.327 4.327 4 C 0.039 3.961 5 N -0.281 5.281 6 C 0.414 3.586 7 O -0.461 6.461 8 N -0.280 5.280 9 C -0.103 4.103 10 C -0.154 4.154 11 N -0.140 5.140 12 N -0.154 5.154 13 C -0.068 4.068 14 C -0.097 4.097 15 C -0.159 4.159 16 C -0.168 4.168 17 C 0.006 3.994 18 N -0.188 5.188 19 N -0.126 5.126 20 C 0.157 3.843 21 C -0.591 4.591 22 H 0.068 0.932 23 C -0.178 4.178 24 N -0.556 5.556 25 Si 0.794 3.206 26 H -0.191 1.191 27 H -0.198 1.198 28 H -0.200 1.200 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.185 0.815 33 H 0.261 0.739 34 H 0.263 0.737 35 H 0.205 0.795 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.087 0.913 39 H 0.123 0.877 40 H 0.137 0.863 41 H 0.093 0.907 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.069 0.931 45 H 0.043 0.957 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 16.981 26.257 -2.197 31.347 hybrid contribution 0.145 -1.321 0.688 1.496 sum 17.126 24.936 -1.508 30.289 Atomic orbital electron populations 1.20489 0.85515 1.04300 1.04055 1.21717 0.96605 0.86460 0.99541 1.21417 0.89953 0.99936 1.21429 1.18858 0.87843 0.88850 1.00590 1.41162 1.07361 1.03239 1.76306 1.15538 0.84685 0.80200 0.78145 1.90743 1.25077 1.73233 1.57019 1.41317 1.08100 1.02252 1.76353 1.17020 0.93374 0.82560 1.17375 1.24438 1.00265 0.89479 1.01260 1.77255 0.92719 1.18519 1.25512 1.48820 1.03184 1.06285 1.57156 1.20904 0.96608 0.84451 1.04831 1.20660 0.83862 1.00452 1.04698 1.21673 1.01528 0.92569 1.00169 1.21983 0.92379 1.01455 1.00976 1.22182 0.91534 0.81665 1.04055 1.77166 1.00050 1.09605 1.31952 1.48760 1.01642 1.07440 1.54710 1.19234 0.94911 0.72451 0.97718 1.21414 1.47513 0.98335 0.91824 0.93237 1.25724 0.94009 0.95964 1.02152 1.69992 1.45056 1.07537 1.32982 0.85427 0.78734 0.77639 0.78817 1.19116 1.19782 1.20046 0.88946 0.91453 0.88061 0.81523 0.73852 0.73682 0.79484 0.87699 0.87887 0.91335 0.87720 0.86321 0.90747 0.88979 0.88729 0.93073 0.95664 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.93 9.89 71.23 0.70 -2.22 16 2 C 0.09 3.72 6.92 41.38 0.29 4.01 16 3 C -0.30 -12.30 9.52 22.11 0.21 -12.09 16 4 C 0.29 11.95 8.11 133.31 1.08 13.03 16 5 N -0.63 -18.89 5.45 -321.23 -1.75 -20.65 16 6 C 0.71 20.92 8.51 179.05 1.52 22.45 16 7 O -0.58 -21.02 10.63 -4.03 -0.04 -21.06 16 8 N -0.63 -13.12 5.48 -318.00 -1.74 -14.86 16 9 C 0.00 0.03 6.87 37.51 0.26 0.29 16 10 C 0.03 0.92 10.85 85.35 0.93 1.85 16 11 N -0.32 -8.83 12.61 -56.53 -0.71 -9.55 16 12 N -0.37 -7.25 4.06 -333.19 -1.35 -8.60 16 13 C 0.06 1.09 6.62 41.20 0.27 1.36 16 14 C -0.06 -0.42 6.11 30.05 0.18 -0.24 16 15 C -0.12 -0.44 5.97 30.79 0.18 -0.25 16 16 C -0.13 -0.51 5.92 30.72 0.18 -0.32 16 17 C 0.13 1.30 7.28 86.44 0.63 1.93 16 18 N -0.36 -16.74 12.59 -54.44 -0.69 -17.42 16 19 N -0.34 -16.71 3.59 -338.45 -1.22 -17.93 16 20 C 0.28 14.66 5.81 85.63 0.50 15.16 16 21 C -0.55 -31.12 9.39 25.60 0.24 -30.88 16 22 H 0.05 2.88 7.81 -2.91 -0.02 2.85 16 23 C 0.02 1.24 5.46 84.65 0.46 1.70 16 24 N -0.92 -51.97 13.29 21.45 0.28 -51.69 16 25 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 29 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.07 2.51 7.71 -2.39 -0.02 2.49 16 31 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.17 6.73 5.91 -2.91 -0.02 6.71 16 33 H 0.42 9.59 8.84 -92.71 -0.82 8.77 16 34 H 0.42 5.20 8.65 -92.71 -0.80 4.40 16 35 H 0.19 6.17 5.92 -2.91 -0.02 6.16 16 36 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.07 0.32 8.12 -2.39 -0.02 0.30 16 39 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 40 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.07 0.37 8.11 -2.39 -0.02 0.35 16 42 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.05 2.70 7.65 -2.39 -0.02 2.68 16 45 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -77.92 382.10 1.87 -76.05 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -0.58 Total: 24.67 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 7.64 Total: 15.77 kcal Atomic # 7 Polarization: -133.52 SS G_CDS: -7.18 Total: -140.70 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.04 Total: -21.06 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -77.92 1.87 -76.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476352012.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.127 kcal (2) G-P(sol) polarization free energy of solvation -77.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds