Wall clock time and date at job start Wed Apr 1 2020 02:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40172 * 119.81516 * 2 1 4 4 C 1.35690 * 119.26881 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.48335 * 179.97438 * 4 3 2 6 6 N 1.36167 * 119.02949 * 0.02562 * 4 3 2 7 7 N 1.40102 * 133.22998 * 180.02562 * 6 4 3 8 8 C 1.31980 * 106.92639 * 179.97438 * 7 6 4 9 9 C 1.48134 * 125.32523 * 180.02562 * 8 7 6 10 10 O 1.21521 * 119.99955 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99938 * 179.97438 * 9 8 7 12 12 C 1.47420 * 125.65282 * 354.71893 * 11 9 8 13 13 C 1.54910 * 104.83295 * 204.08977 * 12 11 9 14 14 C 1.55153 * 101.57993 * 322.98814 * 13 12 11 15 15 C 1.47022 * 125.64441 * 174.40368 * 11 9 8 16 16 H 1.08994 * 109.88495 * 59.56373 * 15 11 9 17 17 C 1.52996 * 109.88495 * 298.39610 * 15 11 9 18 18 N 1.46500 * 109.47260 * 174.97081 * 17 15 11 19 19 C 1.36936 * 120.00080 * 174.84955 * 18 17 15 20 20 H 1.08007 * 120.00029 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00130 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00022 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00106 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46894 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46842 * 119.99854 * 23 21 19 26 26 H 1.48490 * 109.47175 * 240.00061 * 23 21 19 27 27 N 1.33465 * 109.35572 * 359.97438 * 8 7 6 28 28 C 1.32503 * 109.74990 * 0.02562 * 27 8 7 29 29 N 1.31258 * 119.82659 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47209 * 270.01253 * 1 2 3 31 31 H 1.08995 * 109.47169 * 30.02223 * 1 2 3 32 32 H 1.09001 * 109.46482 * 150.01889 * 1 2 3 33 33 H 1.07992 * 120.36936 * 0.02562 * 3 2 1 34 34 H 1.08997 * 109.47512 * 90.00182 * 5 4 3 35 35 H 1.09004 * 109.47077 * 209.99615 * 5 4 3 36 36 H 1.09003 * 109.47201 * 329.99880 * 5 4 3 37 37 H 1.09005 * 110.36387 * 322.92627 * 12 11 9 38 38 H 1.08994 * 110.37068 * 85.24266 * 12 11 9 39 39 H 1.08996 * 111.00696 * 81.06080 * 13 12 11 40 40 H 1.08997 * 111.00141 * 204.91242 * 13 12 11 41 41 H 1.08993 * 110.72023 * 153.87223 * 14 13 12 42 42 H 1.09010 * 110.71776 * 276.96068 * 14 13 12 43 43 H 1.09000 * 109.47383 * 294.97282 * 17 15 11 44 44 H 1.09001 * 109.47183 * 54.97089 * 17 15 11 45 45 H 0.96998 * 120.00225 * 354.85170 * 18 17 15 46 46 H 0.96996 * 120.00107 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2040 1.2162 0.0000 4 6 3.5608 1.2032 0.0005 5 6 4.3376 2.4946 0.0000 6 7 4.2102 0.0064 0.0005 7 7 5.5651 -0.3502 0.0014 8 6 5.6153 -1.6691 0.0014 9 6 6.8556 -2.4790 0.0028 10 8 7.9397 -1.9301 0.0045 11 7 6.7816 -3.8248 0.0032 12 6 5.5433 -4.6172 0.1127 13 6 5.9972 -5.9860 0.6785 14 6 7.3610 -6.1813 -0.0351 15 6 7.9219 -4.7455 -0.1120 16 1 8.6186 -4.5774 0.7092 17 6 8.6302 -4.5317 -1.4511 18 7 9.8328 -5.3666 -1.5064 19 6 10.5750 -5.4229 -2.6557 20 1 10.2741 -4.8515 -3.5214 21 6 11.7142 -6.2144 -2.7082 22 7 12.0806 -6.9112 -1.6535 23 14 12.7264 -6.2918 -4.2764 24 1 12.1062 -5.4234 -5.3091 25 1 14.1069 -5.8206 -3.9981 26 1 12.7710 -7.6922 -4.7682 27 7 4.3738 -2.1590 0.0012 28 6 3.4995 -1.1633 0.0004 29 7 2.1599 -1.1387 0.0005 30 1 -0.3633 0.0002 1.0276 31 1 -0.3633 0.8897 -0.5142 32 1 -0.3632 -0.8902 -0.5136 33 1 1.6670 2.1531 0.0004 34 1 4.5246 2.8066 1.0274 35 1 5.2878 2.3468 -0.5134 36 1 3.7625 3.2644 -0.5146 37 1 4.8446 -4.1365 0.7975 38 1 5.0866 -4.7449 -0.8687 39 1 6.1254 -5.9387 1.7599 40 1 5.2961 -6.7741 0.4039 41 1 8.0161 -6.8228 0.5540 42 1 7.2179 -6.5924 -1.0345 43 1 7.9593 -4.8067 -2.2650 44 1 8.9110 -3.4832 -1.5503 45 1 10.1032 -5.8796 -0.7288 46 1 12.8768 -7.4639 -1.6900 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499947517.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:41 Heat of formation + Delta-G solvation = 126.153330 kcal Electronic energy + Delta-G solvation = -29615.186923 eV Core-core repulsion = 25543.300360 eV Total energy + Delta-G solvation = -4071.886564 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.30409 -40.22187 -39.19819 -37.31900 -35.88472 -34.44924 -32.91577 -32.07825 -31.37238 -31.21553 -29.53750 -28.69953 -28.36787 -25.69419 -24.90160 -23.54353 -22.83521 -22.09557 -21.73326 -20.62391 -19.36017 -18.64722 -18.24736 -17.28035 -17.19575 -16.68417 -16.24087 -15.47020 -15.17311 -14.73013 -14.63227 -14.38946 -14.28221 -13.92542 -13.73296 -13.63625 -13.29852 -13.23266 -13.15683 -12.99650 -12.77372 -12.71119 -12.57400 -12.29104 -12.12759 -11.92504 -11.41153 -11.09476 -10.87978 -10.79712 -10.49616 -10.47468 -10.38337 -10.35025 -10.10492 -10.00748 -9.96508 -9.65208 -9.15544 -8.78951 -8.44309 -6.83552 -5.68791 -2.96816 -0.10863 0.20287 1.33463 1.57430 2.56876 2.78352 2.89261 3.29933 3.48311 3.49500 3.55082 3.57599 3.69711 4.01504 4.25275 4.49592 4.59818 4.66834 4.67950 4.80353 4.80489 4.92075 4.94176 5.02220 5.09594 5.20127 5.34051 5.49530 5.54094 5.55884 5.61665 5.65301 5.69909 5.79738 5.87545 5.99706 6.07219 6.15189 6.18751 6.27197 6.50116 6.59440 6.85502 6.99238 7.01081 7.37498 7.56795 7.79120 8.12481 8.49959 9.61183 10.17386 10.53578 11.54345 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018185 B = 0.002339 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.383339 B =11968.025550 C =12794.585721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.235 3.765 3 C -0.226 4.226 4 C 0.208 3.792 5 C -0.125 4.125 6 N -0.332 5.332 7 N -0.268 5.268 8 C 0.252 3.748 9 C 0.617 3.383 10 O -0.496 6.496 11 N -0.586 5.586 12 C 0.105 3.895 13 C -0.136 4.136 14 C -0.119 4.119 15 C 0.132 3.868 16 H 0.082 0.918 17 C 0.145 3.855 18 N -0.727 5.727 19 C -0.232 4.232 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.907 3.093 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 N -0.496 5.496 28 C 0.449 3.551 29 N -0.459 5.459 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.174 0.826 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.024 0.976 44 H 0.030 0.970 45 H 0.384 0.616 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.302 17.393 7.456 34.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.069 3.931 3 C -0.251 4.251 4 C 0.091 3.909 5 C -0.182 4.182 6 N -0.113 5.113 7 N -0.102 5.102 8 C -0.032 4.032 9 C 0.399 3.601 10 O -0.367 6.367 11 N -0.320 5.320 12 C -0.018 4.018 13 C -0.174 4.174 14 C -0.157 4.157 15 C 0.030 3.970 16 H 0.100 0.900 17 C 0.017 3.983 18 N -0.371 5.371 19 C -0.364 4.364 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.583 5.583 23 Si 0.739 3.261 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 N -0.231 5.231 28 C 0.089 3.911 29 N -0.176 5.176 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.192 0.808 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.042 0.958 44 H 0.047 0.953 45 H 0.218 0.782 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -28.174 16.870 7.279 33.635 hybrid contribution 0.823 0.640 -0.646 1.226 sum -27.351 17.510 6.634 33.146 Atomic orbital electron populations 1.20898 0.86052 1.05050 1.04569 1.22077 0.98156 0.86803 0.86024 1.21647 0.91303 1.01495 1.10697 1.20937 0.92069 0.86566 0.91353 1.21107 1.01306 0.90597 1.05155 1.49064 1.07519 1.08007 1.46728 1.78918 0.88774 1.13273 1.29209 1.24258 0.93052 0.89467 0.96393 1.15858 0.84502 0.80750 0.79008 1.90906 1.26633 1.70582 1.48622 1.48197 1.10346 1.03424 1.70055 1.22532 0.86215 0.90951 1.02087 1.22852 0.97749 0.96416 1.00402 1.22671 0.95792 0.94886 1.02324 1.21947 0.86999 0.87872 1.00188 0.89979 1.20956 0.89216 0.95671 0.92454 1.42183 1.26135 1.53995 1.14837 1.19257 1.03968 1.21855 0.91285 0.91215 1.24720 0.98708 1.00088 0.97592 1.69666 1.26852 1.33337 1.28453 0.86102 0.80183 0.77137 0.82723 1.20618 1.21899 1.21908 1.71042 0.97599 1.26238 1.28220 1.22784 0.90184 0.81744 0.96435 1.67885 1.01599 1.28894 1.19197 0.88630 0.89135 0.89058 0.80821 0.88346 0.88828 0.88260 0.88966 0.90937 0.90884 0.89800 0.89558 0.89741 0.95812 0.95258 0.78234 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.24 10.19 36.01 0.37 0.13 16 2 C 0.24 1.52 6.83 -82.11 -0.56 0.96 16 3 C -0.23 -1.08 9.39 -39.77 -0.37 -1.45 16 4 C 0.21 1.64 6.86 -81.58 -0.56 1.08 16 5 C -0.12 -0.60 10.13 36.00 0.36 -0.24 16 6 N -0.33 -4.25 3.91 -10.07 -0.04 -4.28 16 7 N -0.27 -4.36 12.67 32.02 0.41 -3.95 16 8 C 0.25 4.33 7.77 -156.79 -1.22 3.11 16 9 C 0.62 11.76 7.58 -12.20 -0.09 11.67 16 10 O -0.50 -11.08 16.27 5.35 0.09 -10.99 16 11 N -0.59 -10.15 3.06 -164.02 -0.50 -10.65 16 12 C 0.10 1.46 5.93 -2.53 -0.02 1.45 16 13 C -0.14 -1.67 7.09 -24.58 -0.17 -1.85 16 14 C -0.12 -1.85 6.24 -24.89 -0.16 -2.01 16 15 C 0.13 2.47 2.89 -66.95 -0.19 2.28 16 16 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 17 C 0.15 3.33 5.66 -4.04 -0.02 3.31 16 18 N -0.73 -19.52 5.41 -59.91 -0.32 -19.85 16 19 C -0.23 -6.86 9.99 -15.06 -0.15 -7.01 16 20 H 0.07 2.03 7.83 -52.48 -0.41 1.62 16 21 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -29.02 13.06 55.49 0.72 -28.29 16 23 Si 0.91 23.34 29.55 -169.99 -5.02 18.32 16 24 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 27 N -0.50 -7.81 8.38 -12.23 -0.10 -7.91 16 28 C 0.45 6.21 8.98 -323.04 -2.90 3.31 16 29 N -0.46 -5.09 10.40 -10.01 -0.10 -5.19 16 30 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.09 -0.03 8.09 -51.93 -0.42 -0.45 16 32 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.17 0.03 8.06 -52.49 -0.42 -0.39 16 34 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.15 8.09 -51.93 -0.42 -0.27 16 37 H 0.09 1.26 6.48 -51.93 -0.34 0.93 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.08 1.40 7.77 -51.92 -0.40 1.00 16 43 H 0.02 0.55 8.03 -51.93 -0.42 0.13 16 44 H 0.03 0.75 6.90 -51.93 -0.36 0.39 16 45 H 0.38 10.58 7.61 -40.82 -0.31 10.27 16 46 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 385.50 15.07 5.81 5.81 Total: -1.00 -38.65 385.50 -11.29 -49.94 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.44 Total: 2.89 kcal Atomic # 6 Polarization: 19.95 SS G_CDS: -5.78 Total: 14.16 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: 0.06 Total: -80.13 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.32 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.65 -11.29 -49.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499947517.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.095 kcal (2) G-P(sol) polarization free energy of solvation -38.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds