Wall clock time and date at job start Wed Apr 1 2020 02:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40172 * 119.81516 * 2 1 4 4 C 1.35690 * 119.26881 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.48335 * 179.97438 * 4 3 2 6 6 N 1.36167 * 119.02949 * 0.02562 * 4 3 2 7 7 N 1.40102 * 133.22998 * 180.02562 * 6 4 3 8 8 C 1.31980 * 106.92639 * 179.97438 * 7 6 4 9 9 C 1.48134 * 125.32523 * 180.02562 * 8 7 6 10 10 O 1.21521 * 119.99955 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99938 * 179.97438 * 9 8 7 12 12 C 1.47420 * 125.65282 * 354.71893 * 11 9 8 13 13 C 1.54910 * 104.83295 * 204.08977 * 12 11 9 14 14 C 1.55153 * 101.57993 * 322.98814 * 13 12 11 15 15 C 1.47022 * 125.64441 * 174.40368 * 11 9 8 16 16 H 1.08994 * 109.88495 * 59.56373 * 15 11 9 17 17 C 1.52996 * 109.88495 * 298.39610 * 15 11 9 18 18 N 1.46500 * 109.47260 * 174.97081 * 17 15 11 19 19 C 1.36936 * 120.00080 * 174.84955 * 18 17 15 20 20 H 1.08007 * 120.00029 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00130 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00022 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00106 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46894 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46842 * 119.99854 * 23 21 19 26 26 H 1.48490 * 109.47175 * 240.00061 * 23 21 19 27 27 N 1.33465 * 109.35572 * 359.97438 * 8 7 6 28 28 C 1.32503 * 109.74990 * 0.02562 * 27 8 7 29 29 N 1.31258 * 119.82659 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47209 * 270.01253 * 1 2 3 31 31 H 1.08995 * 109.47169 * 30.02223 * 1 2 3 32 32 H 1.09001 * 109.46482 * 150.01889 * 1 2 3 33 33 H 1.07992 * 120.36936 * 0.02562 * 3 2 1 34 34 H 1.08997 * 109.47512 * 90.00182 * 5 4 3 35 35 H 1.09004 * 109.47077 * 209.99615 * 5 4 3 36 36 H 1.09003 * 109.47201 * 329.99880 * 5 4 3 37 37 H 1.09005 * 110.36387 * 322.92627 * 12 11 9 38 38 H 1.08994 * 110.37068 * 85.24266 * 12 11 9 39 39 H 1.08996 * 111.00696 * 81.06080 * 13 12 11 40 40 H 1.08997 * 111.00141 * 204.91242 * 13 12 11 41 41 H 1.08993 * 110.72023 * 153.87223 * 14 13 12 42 42 H 1.09010 * 110.71776 * 276.96068 * 14 13 12 43 43 H 1.09000 * 109.47383 * 294.97282 * 17 15 11 44 44 H 1.09001 * 109.47183 * 54.97089 * 17 15 11 45 45 H 0.96998 * 120.00225 * 354.85170 * 18 17 15 46 46 H 0.96996 * 120.00107 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2040 1.2162 0.0000 4 6 3.5608 1.2032 0.0005 5 6 4.3376 2.4946 0.0000 6 7 4.2102 0.0064 0.0005 7 7 5.5651 -0.3502 0.0014 8 6 5.6153 -1.6691 0.0014 9 6 6.8556 -2.4790 0.0028 10 8 7.9397 -1.9301 0.0045 11 7 6.7816 -3.8248 0.0032 12 6 5.5433 -4.6172 0.1127 13 6 5.9972 -5.9860 0.6785 14 6 7.3610 -6.1813 -0.0351 15 6 7.9219 -4.7455 -0.1120 16 1 8.6186 -4.5774 0.7092 17 6 8.6302 -4.5317 -1.4511 18 7 9.8328 -5.3666 -1.5064 19 6 10.5750 -5.4229 -2.6557 20 1 10.2741 -4.8515 -3.5214 21 6 11.7142 -6.2144 -2.7082 22 7 12.0806 -6.9112 -1.6535 23 14 12.7264 -6.2918 -4.2764 24 1 12.1062 -5.4234 -5.3091 25 1 14.1069 -5.8206 -3.9981 26 1 12.7710 -7.6922 -4.7682 27 7 4.3738 -2.1590 0.0012 28 6 3.4995 -1.1633 0.0004 29 7 2.1599 -1.1387 0.0005 30 1 -0.3633 0.0002 1.0276 31 1 -0.3633 0.8897 -0.5142 32 1 -0.3632 -0.8902 -0.5136 33 1 1.6670 2.1531 0.0004 34 1 4.5246 2.8066 1.0274 35 1 5.2878 2.3468 -0.5134 36 1 3.7625 3.2644 -0.5146 37 1 4.8446 -4.1365 0.7975 38 1 5.0866 -4.7449 -0.8687 39 1 6.1254 -5.9387 1.7599 40 1 5.2961 -6.7741 0.4039 41 1 8.0161 -6.8228 0.5540 42 1 7.2179 -6.5924 -1.0345 43 1 7.9593 -4.8067 -2.2650 44 1 8.9110 -3.4832 -1.5503 45 1 10.1032 -5.8796 -0.7288 46 1 12.8768 -7.4639 -1.6900 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499947517.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:40 Heat of formation + Delta-G solvation = 100.697259 kcal Electronic energy + Delta-G solvation = -29616.290782 eV Core-core repulsion = 25543.300360 eV Total energy + Delta-G solvation = -4072.990422 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.21435 -41.51770 -40.11343 -38.78562 -36.62348 -36.43071 -33.86841 -33.37682 -32.93394 -32.38063 -30.47251 -30.16774 -28.80436 -26.88359 -26.69831 -24.75635 -24.14030 -23.41438 -22.66329 -21.90377 -20.65759 -19.65256 -19.18100 -19.07359 -18.22123 -18.09180 -17.61421 -16.73507 -16.43800 -15.98003 -15.78411 -15.35822 -15.29011 -15.10651 -15.07035 -14.78772 -14.58375 -14.29504 -14.16341 -13.97060 -13.82546 -13.65731 -13.45334 -13.11307 -13.04810 -12.97359 -12.88339 -12.80668 -12.67711 -12.24111 -12.14206 -11.97309 -11.87274 -11.71414 -11.60526 -11.42187 -11.12825 -10.99733 -10.81732 -9.99188 -9.90260 -9.07671 -7.99179 -5.29530 -0.81866 -0.59011 0.46371 0.50279 1.39727 1.44489 1.46163 1.56413 1.80764 1.99180 2.20157 2.52118 2.69834 3.05670 3.10938 3.33100 3.57788 3.60261 3.72139 3.86754 3.97895 4.07979 4.16641 4.24393 4.26293 4.27008 4.39570 4.46032 4.49470 4.60940 4.72834 4.79055 4.81280 4.84356 4.87475 4.91774 4.99068 5.06400 5.07491 5.10995 5.18473 5.29696 5.34363 5.35853 5.43540 6.09662 6.21004 6.22166 6.46139 6.72291 7.28845 7.97601 8.27377 9.24158 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018185 B = 0.002339 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.383339 B =11968.025550 C =12794.585721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.239 3.761 3 C -0.188 4.188 4 C 0.173 3.827 5 C -0.120 4.120 6 N -0.334 5.334 7 N -0.298 5.298 8 C 0.234 3.766 9 C 0.613 3.387 10 O -0.546 6.546 11 N -0.583 5.583 12 C 0.105 3.895 13 C -0.117 4.117 14 C -0.112 4.112 15 C 0.138 3.862 16 H 0.067 0.933 17 C 0.154 3.846 18 N -0.733 5.733 19 C -0.250 4.250 20 H 0.067 0.933 21 C -0.070 4.070 22 N -0.964 5.964 23 Si 0.977 3.023 24 H -0.272 1.272 25 H -0.291 1.291 26 H -0.284 1.284 27 N -0.516 5.516 28 C 0.435 3.565 29 N -0.489 5.489 30 H 0.115 0.885 31 H 0.129 0.871 32 H 0.083 0.917 33 H 0.235 0.765 34 H 0.108 0.892 35 H 0.063 0.937 36 H 0.142 0.858 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.116 0.884 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.024 0.976 44 H -0.001 1.001 45 H 0.379 0.621 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.296 18.981 7.327 39.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.076 3.924 3 C -0.212 4.212 4 C 0.058 3.942 5 C -0.177 4.177 6 N -0.116 5.116 7 N -0.133 5.133 8 C -0.050 4.050 9 C 0.396 3.604 10 O -0.421 6.421 11 N -0.315 5.315 12 C -0.016 4.016 13 C -0.155 4.155 14 C -0.151 4.151 15 C 0.034 3.966 16 H 0.085 0.915 17 C 0.026 3.974 18 N -0.376 5.376 19 C -0.382 4.382 20 H 0.085 0.915 21 C -0.262 4.262 22 N -0.614 5.614 23 Si 0.806 3.194 24 H -0.196 1.196 25 H -0.218 1.218 26 H -0.211 1.211 27 N -0.252 5.252 28 C 0.075 3.925 29 N -0.209 5.209 30 H 0.133 0.867 31 H 0.148 0.852 32 H 0.102 0.898 33 H 0.252 0.748 34 H 0.126 0.874 35 H 0.082 0.918 36 H 0.161 0.839 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.134 0.866 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.042 0.958 44 H 0.017 0.983 45 H 0.211 0.789 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -32.270 18.494 7.152 37.875 hybrid contribution 1.775 0.370 -0.596 1.909 sum -30.494 18.864 6.555 36.452 Atomic orbital electron populations 1.21160 0.82426 1.06625 1.06129 1.23091 1.00206 0.86281 0.82812 1.22407 0.89768 1.03198 1.05800 1.21894 0.93559 0.86041 0.92661 1.21227 1.00314 0.90170 1.05974 1.49102 1.06062 1.09552 1.46858 1.78719 0.91539 1.12974 1.30093 1.23646 0.92829 0.89713 0.98775 1.16212 0.84808 0.81270 0.78062 1.90851 1.28597 1.71654 1.50962 1.48285 1.11086 1.03123 1.69051 1.22713 0.84897 0.91400 1.02568 1.22861 0.95916 0.95966 1.00743 1.22598 0.97764 0.92209 1.02484 1.21766 0.87459 0.90389 0.96947 0.91527 1.20892 0.88266 0.93146 0.95106 1.42262 1.27106 1.54237 1.14033 1.19564 1.04718 1.21935 0.91993 0.91505 1.25579 0.99778 0.99853 1.01025 1.69810 1.27276 1.33907 1.30396 0.85029 0.78112 0.77380 0.78924 1.19624 1.21789 1.21088 1.70854 0.97218 1.27656 1.29506 1.22982 0.91133 0.81745 0.96651 1.68047 0.99935 1.31364 1.21536 0.86670 0.85234 0.89800 0.74829 0.87354 0.91795 0.83946 0.88369 0.90755 0.89467 0.86560 0.89222 0.90605 0.95770 0.98333 0.78874 0.93683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.05 10.19 71.24 0.73 0.78 16 2 C 0.24 2.23 6.83 43.12 0.29 2.53 16 3 C -0.19 -0.92 9.39 22.15 0.21 -0.72 16 4 C 0.17 2.38 6.86 41.29 0.28 2.66 16 5 C -0.12 -0.91 10.13 71.24 0.72 -0.19 16 6 N -0.33 -8.68 3.91 -185.76 -0.73 -9.41 16 7 N -0.30 -10.39 12.67 -52.60 -0.67 -11.05 16 8 C 0.23 8.65 7.77 137.40 1.07 9.72 16 9 C 0.61 25.39 7.58 86.87 0.66 26.05 16 10 O -0.55 -26.74 16.27 -3.78 -0.06 -26.80 16 11 N -0.58 -21.39 3.06 -791.12 -2.42 -23.82 16 12 C 0.11 2.97 5.93 86.86 0.52 3.48 16 13 C -0.12 -2.71 7.09 31.99 0.23 -2.49 16 14 C -0.11 -3.54 6.24 31.78 0.20 -3.34 16 15 C 0.14 5.43 2.89 45.34 0.13 5.56 16 16 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 17 C 0.15 7.49 5.66 86.38 0.49 7.98 16 18 N -0.73 -41.15 5.41 -343.45 -1.86 -43.01 16 19 C -0.25 -15.23 9.99 84.03 0.84 -14.39 16 20 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 21 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 22 N -0.96 -60.93 13.06 21.65 0.28 -60.65 16 23 Si 0.98 48.60 29.55 68.60 2.03 50.63 16 24 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 25 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 26 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 27 N -0.52 -17.02 8.38 -192.62 -1.61 -18.64 16 28 C 0.43 12.20 8.98 261.57 2.35 14.55 16 29 N -0.49 -10.26 10.40 -185.59 -1.93 -12.18 16 30 H 0.12 -0.36 8.14 -2.39 -0.02 -0.38 16 31 H 0.13 -0.98 8.09 -2.39 -0.02 -1.00 16 32 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.24 -1.75 8.06 -2.91 -0.02 -1.77 16 34 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.14 -0.21 8.09 -2.39 -0.02 -0.23 16 37 H 0.10 2.72 6.48 -2.38 -0.02 2.70 16 38 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 42 H 0.08 2.53 7.77 -2.38 -0.02 2.51 16 43 H 0.02 1.17 8.03 -2.39 -0.02 1.16 16 44 H 0.00 -0.07 6.90 -2.39 -0.02 -0.08 16 45 H 0.38 21.79 7.61 -92.71 -0.71 21.09 16 46 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -92.28 385.50 2.52 -89.76 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.31 Total: 16.75 kcal Atomic # 6 Polarization: 39.25 SS G_CDS: 9.18 Total: 48.43 kcal Atomic # 7 Polarization: -169.82 SS G_CDS: -8.94 Total: -178.76 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.06 Total: -26.80 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.03 Total: 50.63 kcal Total: -92.28 2.52 -89.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499947517.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.462 kcal (2) G-P(sol) polarization free energy of solvation -92.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds