Wall clock time and date at job start Wed Apr 1 2020 02:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35674 * 120.48159 * 2 1 4 4 C 1.40175 * 119.27126 * 179.97438 * 3 2 1 5 5 N 1.31266 * 120.35076 * 0.02562 * 4 3 2 6 6 C 1.33976 * 120.88564 * 359.97438 * 5 4 3 7 7 N 1.32502 * 132.34996 * 179.97438 * 6 5 4 8 8 C 1.33458 * 109.76110 * 180.02562 * 7 6 5 9 9 C 1.48128 * 125.32922 * 180.02562 * 8 7 6 10 10 O 1.21521 * 120.00405 * 180.02562 * 9 8 7 11 11 N 1.34776 * 119.99662 * 0.02562 * 9 8 7 12 12 C 1.47022 * 125.64758 * 359.97438 * 11 9 8 13 13 C 1.54327 * 107.27336 * 178.97550 * 12 11 9 14 14 C 1.55165 * 102.94078 * 337.80587 * 13 12 11 15 15 C 1.52998 * 111.00283 * 277.42764 * 14 13 12 16 16 C 1.52992 * 111.00458 * 153.57403 * 14 13 12 17 17 N 1.46498 * 109.47187 * 180.02562 * 16 14 13 18 18 C 1.36939 * 120.00285 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99592 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00445 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99569 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00280 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47215 * 89.99725 * 22 20 18 24 24 H 1.48501 * 109.47190 * 209.99608 * 22 20 18 25 25 H 1.48496 * 109.47046 * 329.99755 * 22 20 18 26 26 C 1.47425 * 125.64906 * 180.02562 * 11 9 8 27 27 N 1.31992 * 109.35300 * 0.26280 * 8 7 6 28 28 N 1.36164 * 120.48450 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47165 * 89.99783 * 1 2 3 30 30 H 1.09003 * 109.46683 * 210.00127 * 1 2 3 31 31 H 1.09001 * 109.47114 * 329.99854 * 1 2 3 32 32 H 1.08000 * 120.36792 * 359.95841 * 3 2 1 33 33 H 1.08000 * 119.82775 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.88723 * 59.55959 * 12 11 9 35 35 H 1.09000 * 110.01436 * 298.46511 * 12 11 9 36 36 H 1.08993 * 110.72079 * 96.16743 * 13 12 11 37 37 H 1.09002 * 110.72173 * 219.44580 * 13 12 11 38 38 H 1.09000 * 109.47440 * 60.00281 * 15 14 13 39 39 H 1.09000 * 109.46954 * 179.97438 * 15 14 13 40 40 H 1.08992 * 109.47615 * 299.99949 * 15 14 13 41 41 H 1.08999 * 109.47292 * 300.00014 * 16 14 13 42 42 H 1.09006 * 109.47371 * 59.99986 * 16 14 13 43 43 H 0.96999 * 120.00289 * 359.97438 * 17 16 14 44 44 H 0.97004 * 119.99972 * 180.02562 * 21 20 18 45 45 H 1.08997 * 110.36855 * 322.93198 * 26 11 9 46 46 H 1.08999 * 110.36490 * 85.14513 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1953 1.1692 0.0000 4 6 3.5967 1.1396 0.0005 5 7 4.2359 -0.0069 0.0005 6 6 3.5666 -1.1675 0.0005 7 7 3.9689 -2.4299 0.0001 8 6 2.9092 -3.2412 -0.0002 9 6 2.9637 -4.7215 -0.0002 10 8 1.9344 -5.3674 -0.0010 11 7 4.1549 -5.3519 0.0007 12 6 5.4711 -4.6967 0.0011 13 6 6.5379 -5.8115 0.0285 14 6 5.7616 -7.0211 0.6130 15 6 5.7104 -6.9535 2.1407 16 6 6.3729 -8.3432 0.1450 17 7 5.6155 -9.4603 0.7147 18 6 5.9813 -10.7496 0.4335 19 1 6.8279 -10.9429 -0.2086 20 6 5.2639 -11.8082 0.9737 21 7 4.2325 -11.5725 1.7567 22 14 5.7624 -13.5669 0.5896 23 1 6.7405 -14.0368 1.6034 24 1 4.5612 -14.4395 0.6190 25 1 6.3818 -13.6225 -0.7588 26 6 4.3540 -6.8126 0.0002 27 7 1.8049 -2.5183 -0.0057 28 7 2.1978 -1.1734 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6692 2.1124 -0.0007 33 1 4.1536 2.0650 0.0001 34 1 5.5711 -4.0663 0.8846 35 1 5.5880 -4.0938 -0.8994 36 1 6.8923 -6.0310 -0.9786 37 1 7.3679 -5.5353 0.6789 38 1 5.2091 -6.0355 2.4472 39 1 5.1603 -7.8128 2.5241 40 1 6.7248 -6.9639 2.5391 41 1 6.3347 -8.3962 -0.9431 42 1 7.4101 -8.4010 0.4753 43 1 4.8554 -9.2867 1.2917 44 1 3.7314 -12.3122 2.1346 45 1 3.5968 -7.2989 0.6152 46 1 4.3205 -7.1997 -1.0181 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500399985.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:17 Heat of formation + Delta-G solvation = 127.270933 kcal Electronic energy + Delta-G solvation = -29661.296136 eV Core-core repulsion = 25589.458035 eV Total energy + Delta-G solvation = -4071.838101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.36828 -40.28462 -39.17544 -37.84848 -35.76969 -34.81188 -32.84522 -32.11205 -31.38164 -30.43432 -29.09641 -29.04538 -27.23555 -25.98437 -24.79708 -24.43507 -23.37613 -22.19640 -21.76559 -19.84626 -18.97551 -18.82164 -18.18626 -17.35363 -17.24440 -16.72400 -16.12336 -15.95653 -15.41141 -14.74548 -14.63544 -14.43498 -14.12208 -13.94837 -13.88758 -13.59349 -13.27173 -13.16160 -13.06231 -13.03171 -12.82811 -12.65284 -12.12010 -12.01113 -11.91764 -11.59651 -11.57607 -10.95961 -10.78864 -10.68296 -10.55707 -10.43612 -10.32679 -10.26812 -10.23931 -10.20337 -9.90416 -9.56463 -9.23971 -8.82603 -8.53362 -6.86483 -5.70655 -2.99366 -0.17290 0.14482 1.25477 1.49762 2.53580 2.75646 2.87135 3.21179 3.47973 3.49121 3.52937 3.54943 3.66812 4.02954 4.22325 4.48647 4.62497 4.65719 4.68694 4.75186 4.78560 4.85220 5.12412 5.13460 5.36229 5.44701 5.49821 5.52896 5.59195 5.64740 5.70790 5.75767 5.90441 6.01394 6.11519 6.13213 6.19072 6.25471 6.32312 6.43020 6.53961 6.71659 6.80826 6.89300 6.90405 7.28701 7.46763 7.75407 8.01038 8.47973 9.59212 10.16669 10.51105 11.52111 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.026582 B = 0.002160 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.095354 B =12961.469174 C =13703.702994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.206 3.794 3 C -0.229 4.229 4 C 0.212 3.788 5 N -0.454 5.454 6 C 0.443 3.557 7 N -0.493 5.493 8 C 0.251 3.749 9 C 0.617 3.383 10 O -0.506 6.506 11 N -0.589 5.589 12 C 0.112 3.888 13 C -0.124 4.124 14 C -0.078 4.078 15 C -0.131 4.131 16 C 0.170 3.830 17 N -0.731 5.731 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.122 3.878 27 N -0.268 5.268 28 N -0.328 5.328 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.176 0.824 33 H 0.193 0.807 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.045 0.955 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.023 0.977 42 H 0.026 0.974 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.088 0.912 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.142 33.371 -3.574 33.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.088 3.912 3 C -0.254 4.254 4 C 0.026 3.974 5 N -0.169 5.169 6 C 0.082 3.918 7 N -0.227 5.227 8 C -0.033 4.033 9 C 0.398 3.602 10 O -0.378 6.378 11 N -0.322 5.322 12 C -0.011 4.011 13 C -0.162 4.162 14 C -0.079 4.079 15 C -0.188 4.188 16 C 0.042 3.958 17 N -0.376 5.376 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.738 3.262 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C 0.001 3.999 27 N -0.102 5.102 28 N -0.110 5.110 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.193 0.807 33 H 0.210 0.790 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.040 0.960 42 H 0.044 0.956 43 H 0.220 0.780 44 H 0.065 0.935 45 H 0.106 0.894 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.117 31.995 -3.651 32.354 hybrid contribution -0.774 -0.433 -0.007 0.887 sum -3.891 31.562 -3.659 32.011 Atomic orbital electron populations 1.21115 0.86129 1.05817 1.05168 1.20979 0.96868 0.81889 0.91483 1.21841 0.95767 0.97919 1.09904 1.23649 0.91767 0.95810 0.86208 1.68082 1.36153 0.94995 1.17655 1.22852 0.78329 0.93799 0.96785 1.71041 1.27928 0.96078 1.27691 1.24223 0.85796 0.96736 0.96556 1.15851 0.83493 0.81773 0.79069 1.90889 1.32742 1.64665 1.49513 1.48230 1.05043 1.08856 1.70078 1.22145 0.80843 0.95121 1.02980 1.22786 0.97236 0.94011 1.02163 1.21976 0.93621 0.95873 0.96399 1.21688 1.02030 1.01766 0.93326 1.20580 0.94479 0.84920 0.95826 1.42418 1.35681 1.00880 1.58652 1.19209 1.10516 0.83068 1.24198 0.91192 1.24740 0.98113 0.97877 1.00276 1.69662 1.21120 1.30529 1.36760 0.86194 0.77200 0.85069 0.77743 1.21814 1.21845 1.20811 1.22513 0.97991 0.77284 1.02085 1.78926 1.19255 0.82860 1.29156 1.49090 1.09240 1.06365 1.46287 0.88345 0.88915 0.88220 0.80715 0.79007 0.90546 0.90712 0.90319 0.89767 0.93627 0.90966 0.92414 0.95966 0.95630 0.78022 0.93520 0.89351 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.49 10.13 36.01 0.36 -0.13 16 2 C 0.21 1.38 6.86 -81.58 -0.56 0.82 16 3 C -0.23 -0.73 9.72 -39.77 -0.39 -1.11 16 4 C 0.21 0.94 11.27 -17.07 -0.19 0.74 16 5 N -0.45 -4.46 10.48 -13.79 -0.14 -4.61 16 6 C 0.44 5.66 8.99 -323.05 -2.90 2.76 16 7 N -0.49 -7.33 8.61 -12.24 -0.11 -7.44 16 8 C 0.25 4.05 7.78 -156.79 -1.22 2.83 16 9 C 0.62 11.02 7.87 -12.20 -0.10 10.92 16 10 O -0.51 -10.59 17.33 5.35 0.09 -10.50 16 11 N -0.59 -9.58 3.31 -171.52 -0.57 -10.15 16 12 C 0.11 1.51 5.19 -3.06 -0.02 1.50 16 13 C -0.12 -1.60 5.92 -24.89 -0.15 -1.74 16 14 C -0.08 -1.27 0.63 -152.35 -0.10 -1.36 16 15 C -0.13 -2.16 8.40 37.16 0.31 -1.85 16 16 C 0.17 3.36 5.25 -4.05 -0.02 3.34 16 17 N -0.73 -18.38 5.18 -59.91 -0.31 -18.69 16 18 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 19 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.64 13.06 55.49 0.72 -27.91 16 22 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 26 C 0.12 2.15 5.60 -2.52 -0.01 2.14 16 27 N -0.27 -4.08 12.67 32.02 0.41 -3.68 16 28 N -0.33 -3.85 3.91 -10.07 -0.04 -3.89 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.10 0.07 8.09 -51.93 -0.42 -0.35 16 32 H 0.18 -0.22 8.06 -52.49 -0.42 -0.65 16 33 H 0.19 -0.05 8.06 -52.49 -0.42 -0.47 16 34 H 0.08 1.04 7.61 -51.93 -0.40 0.64 16 35 H 0.07 0.98 7.72 -51.93 -0.40 0.58 16 36 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 37 H 0.08 0.96 8.05 -51.93 -0.42 0.54 16 38 H 0.04 0.70 7.91 -51.93 -0.41 0.29 16 39 H 0.07 1.40 6.65 -51.93 -0.35 1.05 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.02 0.44 8.07 -51.93 -0.42 0.03 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.38 10.22 6.22 -40.82 -0.25 9.97 16 44 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.09 1.76 7.95 -51.93 -0.41 1.35 16 46 H 0.08 1.41 7.99 -51.93 -0.41 0.99 16 LS Contribution 383.65 15.07 5.78 5.78 Total: -1.00 -37.59 383.65 -10.80 -48.39 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -6.39 Total: 3.46 kcal Atomic # 6 Polarization: 16.70 SS G_CDS: -5.22 Total: 11.48 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -0.04 Total: -76.36 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.59 -10.80 -48.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500399985.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.660 kcal (2) G-P(sol) polarization free energy of solvation -37.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds