Wall clock time and date at job start Wed Apr 1 2020 03:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30448 * 125.98396 * 2 1 4 4 N 1.39942 * 108.89188 * 179.97438 * 3 2 1 5 5 C 1.46501 * 125.75019 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47164 * 304.96942 * 5 4 3 7 7 F 1.39898 * 109.47407 * 175.00577 * 6 5 4 8 8 F 1.39903 * 109.46991 * 295.00726 * 6 5 4 9 9 C 1.34256 * 108.49002 * 359.74690 * 4 3 2 10 10 C 1.38037 * 107.42054 * 0.40068 * 9 4 3 11 11 C 1.47430 * 126.41638 * 179.87253 * 10 9 4 12 12 O 1.21603 * 120.00081 * 179.68409 * 11 10 9 13 13 N 1.34777 * 119.99963 * 359.68488 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27989 * 13 11 10 15 15 H 1.08995 * 109.47013 * 324.72129 * 14 13 11 16 16 C 1.52999 * 109.47257 * 84.72116 * 14 13 11 17 17 C 1.53004 * 109.47065 * 204.72115 * 14 13 11 18 18 C 1.53003 * 109.46807 * 64.99542 * 17 14 13 19 19 C 1.53004 * 109.46807 * 179.97438 * 18 17 14 20 20 N 1.46499 * 109.46960 * 180.02562 * 19 18 17 21 21 C 1.36938 * 119.99967 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99692 * 0.02562 * 21 20 19 23 23 C 1.38815 * 120.00016 * 179.97438 * 21 20 19 24 24 N 1.31615 * 119.99844 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99729 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47471 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46854 * 120.00578 * 25 23 21 28 28 H 1.48504 * 109.47210 * 239.99931 * 25 23 21 29 29 H 1.09001 * 109.46914 * 270.04515 * 1 2 3 30 30 H 1.09005 * 109.47475 * 30.03836 * 1 2 3 31 31 H 1.09001 * 109.47396 * 150.04138 * 1 2 3 32 32 H 1.08999 * 109.47505 * 64.97587 * 5 4 3 33 33 H 1.09006 * 109.46826 * 184.97263 * 5 4 3 34 34 H 1.09004 * 109.46880 * 55.00212 * 6 5 4 35 35 H 1.08009 * 126.28934 * 180.24061 * 9 4 3 36 36 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 37 37 H 1.09003 * 109.47054 * 179.97438 * 16 14 13 38 38 H 1.08996 * 109.47245 * 299.99926 * 16 14 13 39 39 H 1.08995 * 109.47098 * 60.00065 * 16 14 13 40 40 H 1.08993 * 109.47108 * 184.99578 * 17 14 13 41 41 H 1.08998 * 109.47048 * 305.00090 * 17 14 13 42 42 H 1.08988 * 109.47304 * 300.00405 * 18 17 14 43 43 H 1.08998 * 109.46869 * 60.00439 * 18 17 14 44 44 H 1.09002 * 109.47337 * 300.00120 * 19 18 17 45 45 H 1.08998 * 109.47048 * 60.00548 * 19 18 17 46 46 H 0.97002 * 120.00258 * 0.02562 * 20 19 18 47 47 H 0.97003 * 120.00168 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0556 0.0000 4 7 3.6111 0.6443 0.0006 5 6 4.7787 1.5291 0.0013 6 6 4.6864 2.4963 -1.1806 7 9 5.7401 3.4142 -1.1156 8 9 4.7670 1.7779 -2.3784 9 6 3.6439 -0.6979 0.0066 10 6 2.3373 -1.1432 0.0006 11 6 1.8916 -2.5485 0.0013 12 8 0.7039 -2.8097 0.0014 13 7 2.8004 -3.5437 0.0019 14 6 2.3575 -4.9401 -0.0035 15 1 1.4459 -5.0344 0.5863 16 6 2.0822 -5.3822 -1.4421 17 6 3.4501 -5.8241 0.6014 18 6 3.6382 -5.4647 2.0767 19 6 4.7303 -6.3491 2.6817 20 7 4.9100 -6.0055 4.0945 21 6 5.8400 -6.6706 4.8480 22 1 6.4413 -7.4483 4.4006 23 6 6.0107 -6.3447 6.1865 24 7 5.2782 -5.3967 6.7314 25 14 7.2798 -7.2516 7.2141 26 1 7.9671 -8.2635 6.3722 27 1 8.2771 -6.2833 7.7367 28 1 6.6047 -7.9285 8.3505 29 1 -0.3633 0.0008 1.0277 30 1 -0.3634 0.8897 -0.5144 31 1 -0.3634 -0.8903 -0.5132 32 1 4.8053 2.0949 0.9326 33 1 5.6867 0.9326 -0.0874 34 1 3.7367 3.0298 -1.1402 35 1 4.5298 -1.3157 0.0122 36 1 3.7478 -3.3353 0.0015 37 1 1.7530 -6.4214 -1.4462 38 1 1.3038 -4.7525 -1.8731 39 1 2.9938 -5.2879 -2.0320 40 1 3.1588 -6.8709 0.5167 41 1 4.3858 -5.6628 0.0660 42 1 3.9294 -4.4179 2.1613 43 1 2.7025 -5.6260 2.6120 44 1 4.4386 -7.3960 2.5970 45 1 5.6661 -6.1882 2.1465 46 1 4.3697 -5.3073 4.4963 47 1 5.3976 -5.1686 7.6667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506926708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:25 Heat of formation + Delta-G solvation = -69.966176 kcal Electronic energy + Delta-G solvation = -29670.884474 eV Core-core repulsion = 25139.804343 eV Total energy + Delta-G solvation = -4531.080130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.176 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.57151 -47.57671 -41.80222 -39.48318 -36.71984 -34.97903 -34.72556 -32.76422 -31.71814 -30.93685 -29.97141 -29.26849 -27.63216 -25.67891 -24.21703 -23.25679 -22.71784 -21.33607 -20.81303 -20.36745 -19.94559 -18.48408 -18.12521 -17.73086 -17.03875 -16.92587 -16.33518 -15.93208 -15.55887 -14.82472 -14.69757 -14.61246 -14.47791 -14.29712 -14.08421 -13.92935 -13.74414 -13.62583 -13.48203 -13.35855 -13.09321 -12.97112 -12.67665 -12.55632 -12.31980 -12.12582 -12.09285 -11.81446 -11.31207 -11.17050 -11.13107 -10.88276 -10.80914 -10.46075 -10.40157 -9.99724 -9.86267 -9.73621 -9.69775 -9.18575 -8.91833 -8.87450 -6.92375 -5.77263 -3.05921 1.10783 1.67068 1.88807 2.93259 3.18549 3.36443 3.41916 3.47427 3.49879 3.60171 3.74667 4.00043 4.19377 4.26287 4.53772 4.55762 4.68324 4.73550 4.86681 5.03067 5.11914 5.13608 5.18554 5.43903 5.53240 5.56742 5.58351 5.65273 5.66613 5.76215 5.81239 5.98054 6.09178 6.13018 6.21204 6.25277 6.28224 6.36054 6.40730 6.53977 6.86450 6.89601 7.16868 7.52603 7.69279 8.25999 8.41821 9.52683 10.11956 10.46120 11.45751 Molecular weight = 344.18amu Principal moments of inertia in cm(-1) A = 0.008726 B = 0.002401 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.898595 B =11656.658639 C =13500.765424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.143 3.857 3 N -0.306 5.306 4 N -0.366 5.366 5 C 0.086 3.914 6 C 0.255 3.745 7 F -0.195 7.195 8 F -0.198 7.198 9 C 0.114 3.886 10 C -0.281 4.281 11 C 0.596 3.404 12 O -0.541 6.541 13 N -0.720 5.720 14 C 0.143 3.857 15 H 0.090 0.910 16 C -0.162 4.162 17 C -0.123 4.123 18 C -0.125 4.125 19 C 0.153 3.847 20 N -0.735 5.735 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.291 1.291 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.186 0.814 36 H 0.396 0.604 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.017 0.983 45 H 0.016 0.984 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.493 14.457 -20.394 25.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.025 4.025 3 N -0.127 5.127 4 N -0.144 5.144 5 C -0.037 4.037 6 C 0.201 3.799 7 F -0.176 7.176 8 F -0.179 7.179 9 C -0.036 4.036 10 C -0.296 4.296 11 C 0.384 3.616 12 O -0.419 6.419 13 N -0.371 5.371 14 C 0.039 3.961 15 H 0.108 0.892 16 C -0.220 4.220 17 C -0.161 4.161 18 C -0.163 4.163 19 C 0.025 3.975 20 N -0.379 5.379 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.212 4.212 24 N -0.582 5.582 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.218 1.218 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.203 0.797 36 H 0.230 0.770 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.035 0.965 45 H 0.034 0.966 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.018 15.501 -20.374 26.088 hybrid contribution 1.447 -0.959 0.810 1.916 sum -3.571 14.542 -19.564 24.637 Atomic orbital electron populations 1.20385 0.85314 1.04116 1.03876 1.22512 0.97343 0.88571 0.94027 1.77140 0.85366 1.22743 1.27422 1.47934 1.05479 1.04563 1.56465 1.22776 0.86664 0.94117 1.00158 1.22086 0.90756 0.85210 0.81864 1.93033 1.60873 1.67298 1.96380 1.93035 1.97080 1.79073 1.48746 1.23155 0.99310 0.84648 0.96525 1.20313 0.91887 0.94834 1.22520 1.17147 0.85670 0.83324 0.75487 1.90737 1.16247 1.84160 1.50796 1.45924 1.09362 1.06090 1.75690 1.21028 0.98829 0.79644 0.96568 0.89173 1.22174 1.01813 1.01631 0.96413 1.21852 0.97984 0.99754 0.96530 1.21727 1.00190 1.00378 0.93997 1.20653 0.94626 0.95743 0.86468 1.42398 1.45555 1.44731 1.05210 1.19288 1.12101 1.13796 0.91794 0.91176 1.24755 1.00086 0.99274 0.97048 1.69674 1.42751 1.33156 1.12665 0.86119 0.80859 0.78854 0.80389 1.20558 1.21892 1.21836 0.89883 0.91035 0.88404 0.85878 0.85683 0.85714 0.79690 0.76998 0.91594 0.92229 0.92649 0.90256 0.91523 0.92131 0.91902 0.96497 0.96638 0.78344 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 9.92 36.01 0.36 -0.42 16 2 C 0.14 1.65 7.26 -82.02 -0.60 1.06 16 3 N -0.31 -3.32 12.24 33.90 0.42 -2.90 16 4 N -0.37 -3.15 3.63 -60.81 -0.22 -3.37 16 5 C 0.09 0.45 6.68 -4.04 -0.03 0.42 16 6 C 0.26 1.59 5.42 37.16 0.20 1.79 16 7 F -0.19 -1.38 17.34 2.25 0.04 -1.34 16 8 F -0.20 -1.73 17.32 2.25 0.04 -1.69 16 9 C 0.11 0.97 10.94 -16.57 -0.18 0.79 16 10 C -0.28 -3.16 6.13 -105.07 -0.64 -3.81 16 11 C 0.60 7.53 7.78 -12.52 -0.10 7.43 16 12 O -0.54 -8.37 14.58 5.27 0.08 -8.30 16 13 N -0.72 -7.59 4.52 -54.88 -0.25 -7.84 16 14 C 0.14 1.58 2.57 -67.93 -0.17 1.40 16 15 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 16 C -0.16 -1.56 9.48 37.16 0.35 -1.20 16 17 C -0.12 -1.38 4.75 -26.73 -0.13 -1.51 16 18 C -0.12 -1.91 5.22 -26.73 -0.14 -2.05 16 19 C 0.15 3.00 6.26 -4.04 -0.03 2.97 16 20 N -0.73 -18.76 5.60 -59.91 -0.34 -19.10 16 21 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 24 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 25 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.10 1.07 6.55 -51.93 -0.34 0.73 16 32 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.13 0.39 8.06 -51.93 -0.42 -0.03 16 34 H 0.13 0.69 8.04 -51.93 -0.42 0.27 16 35 H 0.19 0.91 7.46 -52.48 -0.39 0.52 16 36 H 0.40 3.29 7.53 -40.82 -0.31 2.99 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.93 7.75 -51.94 -0.40 0.53 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.38 10.33 7.67 -40.82 -0.31 10.02 16 47 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 403.42 15.07 6.08 6.08 Total: -1.00 -35.75 403.42 -6.98 -42.73 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -7.18 Total: 6.61 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -1.35 Total: -0.55 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: 0.34 Total: -60.92 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.08 Total: -8.30 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.08 Total: -3.03 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.75 -6.98 -42.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506926708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.239 kcal (2) G-P(sol) polarization free energy of solvation -35.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds