Wall clock time and date at job start Wed Apr 1 2020 03:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30451 * 125.98740 * 2 1 4 4 N 1.39931 * 108.89832 * 179.97438 * 3 2 1 5 5 C 1.46499 * 125.75265 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47112 * 304.97797 * 5 4 3 7 7 F 1.39903 * 109.46811 * 175.00525 * 6 5 4 8 8 F 1.39905 * 109.47258 * 294.99522 * 6 5 4 9 9 C 1.34257 * 108.48976 * 359.75014 * 4 3 2 10 10 C 1.38039 * 107.41964 * 0.39601 * 9 4 3 11 11 C 1.47435 * 126.41707 * 179.87163 * 10 9 4 12 12 O 1.21607 * 119.99761 * 179.68630 * 11 10 9 13 13 N 1.34773 * 119.99821 * 359.68437 * 11 10 9 14 14 C 1.46496 * 119.99909 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.47459 * 35.00135 * 14 13 11 16 16 C 1.53006 * 109.46995 * 275.00159 * 14 13 11 17 17 C 1.52997 * 109.47194 * 155.00140 * 14 13 11 18 18 C 1.53003 * 109.46992 * 294.99585 * 17 14 13 19 19 C 1.53005 * 109.46900 * 180.02562 * 18 17 14 20 20 N 1.46497 * 109.46689 * 180.02562 * 19 18 17 21 21 C 1.36938 * 119.99849 * 179.97438 * 20 19 18 22 22 H 1.08002 * 120.00302 * 0.02562 * 21 20 19 23 23 C 1.38810 * 119.99954 * 179.97438 * 21 20 19 24 24 N 1.31614 * 120.00504 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00091 * 180.02562 * 23 21 20 26 26 H 1.48511 * 109.46926 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47356 * 119.99932 * 25 23 21 28 28 H 1.48493 * 109.47550 * 240.00833 * 25 23 21 29 29 H 1.08995 * 109.47647 * 270.04296 * 1 2 3 30 30 H 1.09000 * 109.47409 * 30.04389 * 1 2 3 31 31 H 1.09004 * 109.46749 * 150.04309 * 1 2 3 32 32 H 1.08996 * 109.46953 * 64.97943 * 5 4 3 33 33 H 1.09004 * 109.46696 * 184.97673 * 5 4 3 34 34 H 1.08993 * 109.47681 * 54.99733 * 6 5 4 35 35 H 1.08001 * 126.29326 * 180.24047 * 9 4 3 36 36 H 0.97003 * 120.00265 * 0.02562 * 13 11 10 37 37 H 1.09001 * 109.47002 * 299.99701 * 16 14 13 38 38 H 1.08993 * 109.46955 * 60.00138 * 16 14 13 39 39 H 1.09000 * 109.47050 * 179.97438 * 16 14 13 40 40 H 1.09002 * 109.47223 * 54.99994 * 17 14 13 41 41 H 1.09006 * 109.47396 * 175.00204 * 17 14 13 42 42 H 1.09000 * 109.46966 * 300.00238 * 18 17 14 43 43 H 1.08998 * 109.46717 * 60.00358 * 18 17 14 44 44 H 1.09000 * 109.46872 * 299.99535 * 19 18 17 45 45 H 1.08998 * 109.47316 * 60.00513 * 19 18 17 46 46 H 0.97004 * 120.00484 * 0.02562 * 20 19 18 47 47 H 0.97003 * 120.00692 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6443 0.0006 5 6 4.7786 1.5292 0.0003 6 6 4.6859 2.4955 -1.1823 7 9 5.7397 3.4134 -1.1182 8 9 4.7663 1.7762 -2.3797 9 6 3.6439 -0.6978 0.0065 10 6 2.3373 -1.1432 0.0006 11 6 1.8916 -2.5485 0.0012 12 8 0.7039 -2.8097 0.0013 13 7 2.8005 -3.5437 0.0017 14 6 2.3577 -4.9401 0.0018 15 1 1.4456 -5.0321 -0.5879 16 6 2.0831 -5.3880 1.4389 17 6 3.4499 -5.8215 -0.6072 18 6 3.6370 -5.4564 -2.0812 19 6 4.7288 -6.3384 -2.6904 20 7 4.9083 -5.9883 -4.1016 21 6 5.8388 -6.6495 -4.8580 22 1 6.4401 -7.4294 -4.4144 23 6 6.0086 -6.3182 -6.1953 24 7 5.2756 -5.3683 -6.7362 25 14 7.2774 -7.2207 -7.2274 26 1 7.9645 -8.2368 -6.3901 27 1 6.6017 -7.8932 -8.3660 28 1 8.2743 -6.2503 -7.7464 29 1 -0.3634 0.0008 1.0276 30 1 -0.3634 0.8896 -0.5145 31 1 -0.3633 -0.8904 -0.5132 32 1 4.8054 2.0957 0.9311 33 1 5.6866 0.9326 -0.0883 34 1 3.7363 3.0289 -1.1421 35 1 4.5297 -1.3156 0.0121 36 1 3.7479 -3.3353 0.0020 37 1 2.9952 -5.2960 2.0286 38 1 1.3050 -4.7600 1.8727 39 1 1.7532 -6.4268 1.4389 40 1 4.3859 -5.6624 -0.0718 41 1 3.1587 -6.8689 -0.5266 42 1 2.7010 -5.6156 -2.6166 43 1 3.9282 -4.4092 -2.1619 44 1 5.6649 -6.1795 -2.1551 45 1 4.4372 -7.3855 -2.6098 46 1 4.3686 -5.2876 -4.5000 47 1 5.3945 -5.1365 -7.6706 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506926709.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:29 Heat of formation + Delta-G solvation = -69.341833 kcal Electronic energy + Delta-G solvation = -29813.252516 eV Core-core repulsion = 25282.199459 eV Total energy + Delta-G solvation = -4531.053057 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.176 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.47212 -47.47264 -41.80099 -39.48195 -36.71436 -34.96641 -34.71333 -32.75457 -31.70708 -30.92358 -29.96386 -29.26108 -27.61546 -25.66722 -24.18535 -23.23800 -22.70533 -21.33123 -20.79794 -20.36730 -19.93710 -18.44617 -18.04246 -17.67795 -17.01081 -16.88911 -16.35782 -15.86835 -15.53438 -14.88913 -14.72186 -14.55291 -14.38027 -14.25610 -14.03958 -13.82630 -13.74687 -13.65283 -13.45056 -13.29843 -13.06715 -12.97320 -12.67992 -12.52664 -12.31991 -12.13218 -12.07919 -11.75312 -11.30086 -11.17015 -11.11596 -10.86383 -10.79336 -10.44573 -10.38959 -9.97767 -9.86264 -9.73485 -9.67847 -9.18688 -8.91254 -8.85533 -6.90074 -5.74690 -3.03559 1.10477 1.68121 1.88898 2.97716 3.18467 3.36758 3.43895 3.49075 3.51725 3.67536 3.78072 4.03308 4.20756 4.27696 4.55409 4.57507 4.70022 4.74241 4.87677 5.03135 5.12043 5.13799 5.18889 5.44038 5.51501 5.58390 5.59199 5.65217 5.66414 5.77424 5.81895 5.98589 6.08940 6.13946 6.22000 6.25621 6.28801 6.37538 6.42259 6.54075 6.88023 6.91157 7.17075 7.52633 7.71316 8.25997 8.44181 9.55036 10.14376 10.48470 11.48249 Molecular weight = 344.18amu Principal moments of inertia in cm(-1) A = 0.007467 B = 0.002806 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3748.991353 B = 9976.673278 C =12796.449143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.143 3.857 3 N -0.305 5.305 4 N -0.366 5.366 5 C 0.087 3.913 6 C 0.254 3.746 7 F -0.195 7.195 8 F -0.193 7.193 9 C 0.113 3.887 10 C -0.281 4.281 11 C 0.596 3.404 12 O -0.541 6.541 13 N -0.720 5.720 14 C 0.143 3.857 15 H 0.090 0.910 16 C -0.161 4.161 17 C -0.123 4.123 18 C -0.125 4.125 19 C 0.153 3.847 20 N -0.735 5.735 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.292 1.292 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.186 0.814 36 H 0.396 0.604 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.015 0.985 45 H 0.017 0.983 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.484 14.367 21.414 26.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.025 4.025 3 N -0.127 5.127 4 N -0.144 5.144 5 C -0.036 4.036 6 C 0.200 3.800 7 F -0.177 7.177 8 F -0.175 7.175 9 C -0.037 4.037 10 C -0.295 4.295 11 C 0.384 3.616 12 O -0.419 6.419 13 N -0.371 5.371 14 C 0.039 3.961 15 H 0.108 0.892 16 C -0.220 4.220 17 C -0.161 4.161 18 C -0.163 4.163 19 C 0.026 3.974 20 N -0.379 5.379 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.582 5.582 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.219 1.219 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.203 0.797 36 H 0.230 0.770 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.033 0.967 45 H 0.035 0.965 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.011 15.412 21.334 26.791 hybrid contribution 1.448 -0.951 -0.910 1.957 sum -3.563 14.460 20.424 25.277 Atomic orbital electron populations 1.20382 0.85316 1.04400 1.03590 1.22512 0.97341 0.88567 0.94051 1.77137 0.85375 1.22757 1.27388 1.47939 1.05485 1.04569 1.56453 1.22769 0.86672 0.94115 1.00091 1.22070 0.90704 0.85162 0.82084 1.93030 1.60898 1.67330 1.96408 1.93081 1.97035 1.78874 1.48469 1.23153 0.99303 0.84658 0.96556 1.20316 0.91890 0.94835 1.22494 1.17149 0.85670 0.83325 0.75485 1.90738 1.16243 1.84162 1.50796 1.45923 1.09362 1.06090 1.75686 1.21030 0.98853 0.79647 0.96557 0.89170 1.22171 1.01768 1.01616 0.96428 1.21853 0.97963 0.99752 0.96541 1.21733 1.00215 1.00417 0.93977 1.20646 0.94604 0.95703 0.86497 1.42398 1.45576 1.44570 1.05354 1.19282 1.12150 1.13799 0.91843 0.91189 1.24753 1.00053 0.99237 0.97056 1.69672 1.42696 1.32953 1.12840 0.86126 0.80878 0.78829 0.80420 1.20566 1.21846 1.21877 0.90114 0.90938 0.88286 0.86104 0.85700 0.85791 0.79697 0.76997 0.92670 0.92247 0.91597 0.91537 0.90262 0.91893 0.92101 0.96677 0.96515 0.78320 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 9.92 36.01 0.36 -0.42 16 2 C 0.14 1.65 7.26 -82.02 -0.60 1.06 16 3 N -0.31 -3.32 12.24 33.90 0.42 -2.91 16 4 N -0.37 -3.16 3.63 -60.81 -0.22 -3.38 16 5 C 0.09 0.46 6.68 -4.04 -0.03 0.43 16 6 C 0.25 1.84 5.42 37.16 0.20 2.04 16 7 F -0.20 -1.55 17.34 2.25 0.04 -1.51 16 8 F -0.19 -2.14 17.32 2.25 0.04 -2.10 16 9 C 0.11 0.97 10.95 -16.56 -0.18 0.79 16 10 C -0.28 -3.16 6.13 -105.07 -0.64 -3.81 16 11 C 0.60 7.53 7.78 -12.52 -0.10 7.44 16 12 O -0.54 -8.38 14.58 5.27 0.08 -8.30 16 13 N -0.72 -7.59 4.52 -54.88 -0.25 -7.84 16 14 C 0.14 1.58 2.57 -67.93 -0.17 1.40 16 15 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 16 C -0.16 -1.53 9.48 37.16 0.35 -1.18 16 17 C -0.12 -1.39 4.75 -26.73 -0.13 -1.52 16 18 C -0.13 -1.95 5.22 -26.73 -0.14 -2.09 16 19 C 0.15 3.04 6.26 -4.04 -0.03 3.01 16 20 N -0.73 -19.00 5.60 -59.91 -0.34 -19.34 16 21 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 22 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 23 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 24 N -0.93 -28.76 13.06 55.49 0.72 -28.03 16 25 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 1.13 6.55 -51.93 -0.34 0.79 16 32 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.12 0.40 8.06 -51.93 -0.42 -0.02 16 34 H 0.12 0.80 8.04 -51.93 -0.42 0.38 16 35 H 0.19 0.91 7.46 -52.49 -0.39 0.52 16 36 H 0.40 3.29 7.53 -40.82 -0.31 2.99 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.06 0.96 7.75 -51.93 -0.40 0.55 16 44 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.38 10.49 7.67 -40.82 -0.31 10.17 16 47 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 403.42 15.07 6.08 6.08 Total: -1.00 -36.36 403.42 -6.98 -43.34 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -7.18 Total: 6.72 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -1.35 Total: -0.35 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: 0.34 Total: -61.49 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.08 Total: -8.30 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.08 Total: -3.61 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.36 -6.98 -43.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506926709.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.997 kcal (2) G-P(sol) polarization free energy of solvation -36.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds