Wall clock time and date at job start Wed Apr 1 2020 03:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30451 * 125.98740 * 2 1 4 4 N 1.39931 * 108.89832 * 179.97438 * 3 2 1 5 5 C 1.46499 * 125.75265 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47112 * 304.97797 * 5 4 3 7 7 F 1.39903 * 109.46811 * 175.00525 * 6 5 4 8 8 F 1.39905 * 109.47258 * 294.99522 * 6 5 4 9 9 C 1.34257 * 108.48976 * 359.75014 * 4 3 2 10 10 C 1.38039 * 107.41964 * 0.39601 * 9 4 3 11 11 C 1.47435 * 126.41707 * 179.87163 * 10 9 4 12 12 O 1.21607 * 119.99761 * 179.68630 * 11 10 9 13 13 N 1.34773 * 119.99821 * 359.68437 * 11 10 9 14 14 C 1.46496 * 119.99909 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.47459 * 35.00135 * 14 13 11 16 16 C 1.53006 * 109.46995 * 275.00159 * 14 13 11 17 17 C 1.52997 * 109.47194 * 155.00140 * 14 13 11 18 18 C 1.53003 * 109.46992 * 294.99585 * 17 14 13 19 19 C 1.53005 * 109.46900 * 180.02562 * 18 17 14 20 20 N 1.46497 * 109.46689 * 180.02562 * 19 18 17 21 21 C 1.36938 * 119.99849 * 179.97438 * 20 19 18 22 22 H 1.08002 * 120.00302 * 0.02562 * 21 20 19 23 23 C 1.38810 * 119.99954 * 179.97438 * 21 20 19 24 24 N 1.31614 * 120.00504 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00091 * 180.02562 * 23 21 20 26 26 H 1.48511 * 109.46926 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47356 * 119.99932 * 25 23 21 28 28 H 1.48493 * 109.47550 * 240.00833 * 25 23 21 29 29 H 1.08995 * 109.47647 * 270.04296 * 1 2 3 30 30 H 1.09000 * 109.47409 * 30.04389 * 1 2 3 31 31 H 1.09004 * 109.46749 * 150.04309 * 1 2 3 32 32 H 1.08996 * 109.46953 * 64.97943 * 5 4 3 33 33 H 1.09004 * 109.46696 * 184.97673 * 5 4 3 34 34 H 1.08993 * 109.47681 * 54.99733 * 6 5 4 35 35 H 1.08001 * 126.29326 * 180.24047 * 9 4 3 36 36 H 0.97003 * 120.00265 * 0.02562 * 13 11 10 37 37 H 1.09001 * 109.47002 * 299.99701 * 16 14 13 38 38 H 1.08993 * 109.46955 * 60.00138 * 16 14 13 39 39 H 1.09000 * 109.47050 * 179.97438 * 16 14 13 40 40 H 1.09002 * 109.47223 * 54.99994 * 17 14 13 41 41 H 1.09006 * 109.47396 * 175.00204 * 17 14 13 42 42 H 1.09000 * 109.46966 * 300.00238 * 18 17 14 43 43 H 1.08998 * 109.46717 * 60.00358 * 18 17 14 44 44 H 1.09000 * 109.46872 * 299.99535 * 19 18 17 45 45 H 1.08998 * 109.47316 * 60.00513 * 19 18 17 46 46 H 0.97004 * 120.00484 * 0.02562 * 20 19 18 47 47 H 0.97003 * 120.00692 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6443 0.0006 5 6 4.7786 1.5292 0.0003 6 6 4.6859 2.4955 -1.1823 7 9 5.7397 3.4134 -1.1182 8 9 4.7663 1.7762 -2.3797 9 6 3.6439 -0.6978 0.0065 10 6 2.3373 -1.1432 0.0006 11 6 1.8916 -2.5485 0.0012 12 8 0.7039 -2.8097 0.0013 13 7 2.8005 -3.5437 0.0017 14 6 2.3577 -4.9401 0.0018 15 1 1.4456 -5.0321 -0.5879 16 6 2.0831 -5.3880 1.4389 17 6 3.4499 -5.8215 -0.6072 18 6 3.6370 -5.4564 -2.0812 19 6 4.7288 -6.3384 -2.6904 20 7 4.9083 -5.9883 -4.1016 21 6 5.8388 -6.6495 -4.8580 22 1 6.4401 -7.4294 -4.4144 23 6 6.0086 -6.3182 -6.1953 24 7 5.2756 -5.3683 -6.7362 25 14 7.2774 -7.2207 -7.2274 26 1 7.9645 -8.2368 -6.3901 27 1 6.6017 -7.8932 -8.3660 28 1 8.2743 -6.2503 -7.7464 29 1 -0.3634 0.0008 1.0276 30 1 -0.3634 0.8896 -0.5145 31 1 -0.3633 -0.8904 -0.5132 32 1 4.8054 2.0957 0.9311 33 1 5.6866 0.9326 -0.0883 34 1 3.7363 3.0289 -1.1421 35 1 4.5297 -1.3156 0.0121 36 1 3.7479 -3.3353 0.0020 37 1 2.9952 -5.2960 2.0286 38 1 1.3050 -4.7600 1.8727 39 1 1.7532 -6.4268 1.4389 40 1 4.3859 -5.6624 -0.0718 41 1 3.1587 -6.8689 -0.5266 42 1 2.7010 -5.6156 -2.6166 43 1 3.9282 -4.4092 -2.1619 44 1 5.6649 -6.1795 -2.1551 45 1 4.4372 -7.3855 -2.6098 46 1 4.3686 -5.2876 -4.5000 47 1 5.3945 -5.1365 -7.6706 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506926709.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:28 Heat of formation + Delta-G solvation = -93.970040 kcal Electronic energy + Delta-G solvation = -29814.320475 eV Core-core repulsion = 25282.199459 eV Total energy + Delta-G solvation = -4532.121016 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.176 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.12557 -48.14994 -42.53725 -40.41127 -37.87121 -36.47734 -35.49688 -34.20226 -32.96285 -31.79645 -31.12186 -30.34420 -28.33396 -27.19750 -25.07439 -24.58324 -23.63687 -22.43046 -22.03658 -21.25831 -20.71489 -19.15914 -19.06682 -18.68008 -18.36361 -17.62280 -17.23732 -16.73261 -16.50696 -16.30706 -15.82165 -15.68269 -15.36177 -15.24731 -15.10879 -15.04056 -14.79175 -14.51325 -14.43341 -14.25063 -14.02597 -13.86558 -13.72223 -13.39742 -13.20632 -13.11075 -13.03351 -12.92621 -12.79962 -12.39039 -12.34181 -12.18470 -12.02469 -11.87785 -11.82461 -11.67335 -11.44712 -10.93522 -10.82373 -10.46931 -10.09757 -9.68801 -8.99586 -7.95220 -5.24487 0.40108 1.03232 1.10078 1.47230 1.48448 1.58575 2.32022 2.43236 2.50125 2.56164 3.14968 3.30304 3.38824 3.43235 3.58436 3.69723 3.73769 3.97002 4.02814 4.16049 4.19780 4.28488 4.32601 4.34493 4.40384 4.48324 4.64326 4.74112 4.75775 4.87599 4.90680 4.91923 4.94779 5.00564 5.06759 5.19229 5.37904 5.41862 5.45947 5.48070 5.53072 5.63460 5.70851 6.27285 6.40256 6.69972 7.32795 7.37155 8.10879 8.32176 9.28728 Molecular weight = 344.18amu Principal moments of inertia in cm(-1) A = 0.007467 B = 0.002806 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3748.991353 B = 9976.673278 C =12796.449143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.124 3.876 3 N -0.321 5.321 4 N -0.363 5.363 5 C 0.085 3.915 6 C 0.251 3.749 7 F -0.199 7.199 8 F -0.218 7.218 9 C 0.130 3.870 10 C -0.311 4.311 11 C 0.593 3.407 12 O -0.580 6.580 13 N -0.710 5.710 14 C 0.146 3.854 15 H 0.063 0.937 16 C -0.153 4.153 17 C -0.108 4.108 18 C -0.113 4.113 19 C 0.150 3.850 20 N -0.752 5.752 21 C -0.244 4.244 22 H 0.078 0.922 23 C -0.079 4.079 24 N -0.972 5.972 25 Si 0.974 3.026 26 H -0.263 1.263 27 H -0.295 1.295 28 H -0.292 1.292 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.129 0.871 35 H 0.225 0.775 36 H 0.409 0.591 37 H 0.073 0.927 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.043 0.957 43 H 0.058 0.942 44 H 0.028 0.972 45 H 0.019 0.981 46 H 0.371 0.629 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.274 13.881 23.236 27.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.044 4.044 3 N -0.143 5.143 4 N -0.141 5.141 5 C -0.036 4.036 6 C 0.196 3.804 7 F -0.180 7.180 8 F -0.200 7.200 9 C -0.021 4.021 10 C -0.326 4.326 11 C 0.382 3.618 12 O -0.461 6.461 13 N -0.362 5.362 14 C 0.042 3.958 15 H 0.081 0.919 16 C -0.211 4.211 17 C -0.146 4.146 18 C -0.151 4.151 19 C 0.024 3.976 20 N -0.394 5.394 21 C -0.376 4.376 22 H 0.096 0.904 23 C -0.271 4.271 24 N -0.623 5.623 25 Si 0.803 3.197 26 H -0.187 1.187 27 H -0.222 1.222 28 H -0.220 1.220 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.167 0.833 33 H 0.171 0.829 34 H 0.146 0.854 35 H 0.241 0.759 36 H 0.245 0.755 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.046 0.954 45 H 0.037 0.963 46 H 0.202 0.798 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.764 14.916 23.208 27.726 hybrid contribution 0.788 -0.758 -1.429 1.799 sum -1.976 14.158 21.779 26.051 Atomic orbital electron populations 1.20322 0.85190 1.03817 1.03970 1.22742 0.97965 0.89104 0.94568 1.77075 0.86550 1.22790 1.27859 1.48203 1.05499 1.05155 1.55206 1.23094 0.86257 0.94120 1.00154 1.22296 0.90757 0.85534 0.81767 1.93020 1.61070 1.67515 1.96380 1.93032 1.97136 1.79480 1.50303 1.23677 0.99484 0.84894 0.94044 1.20324 0.93263 0.94046 1.24965 1.17402 0.85359 0.84197 0.74886 1.90713 1.17871 1.84794 1.52738 1.45830 1.09837 1.05603 1.74918 1.20937 0.97670 0.79889 0.97321 0.91876 1.22086 1.02157 1.01831 0.95057 1.21750 0.99184 1.00269 0.93443 1.21596 0.97658 0.99441 0.96396 1.20870 0.96459 0.96492 0.83783 1.42687 1.44953 1.44111 1.07640 1.19716 1.12069 1.13485 0.92351 0.90410 1.25615 1.02492 1.00499 0.98491 1.69836 1.44738 1.34888 1.12842 0.85056 0.78293 0.77791 0.78530 1.18723 1.22191 1.21963 0.89284 0.89968 0.90261 0.83279 0.82942 0.85384 0.75899 0.75455 0.90819 0.93794 0.90508 0.89089 0.89236 0.93854 0.92314 0.95412 0.96341 0.79777 0.94078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.56 9.92 71.24 0.71 -0.85 16 2 C 0.12 2.87 7.26 43.51 0.32 3.19 16 3 N -0.32 -6.74 12.24 -46.68 -0.57 -7.31 16 4 N -0.36 -5.51 3.63 -346.31 -1.26 -6.77 16 5 C 0.09 0.66 6.68 86.38 0.58 1.24 16 6 C 0.25 3.27 5.42 71.98 0.39 3.66 16 7 F -0.20 -2.85 17.34 44.97 0.78 -2.07 16 8 F -0.22 -4.67 17.32 44.97 0.78 -3.89 16 9 C 0.13 1.94 10.95 84.27 0.92 2.86 16 10 C -0.31 -6.86 6.13 -20.15 -0.12 -6.98 16 11 C 0.59 15.00 7.78 86.67 0.67 15.68 16 12 O -0.58 -18.74 14.58 -4.05 -0.06 -18.80 16 13 N -0.71 -14.06 4.52 -445.80 -2.01 -16.07 16 14 C 0.15 3.03 2.57 44.99 0.12 3.15 16 15 H 0.06 1.68 7.58 -2.39 -0.02 1.66 16 16 C -0.15 -2.60 9.48 71.98 0.68 -1.92 16 17 C -0.11 -2.18 4.75 30.59 0.15 -2.03 16 18 C -0.11 -3.38 5.22 30.60 0.16 -3.22 16 19 C 0.15 5.73 6.26 86.38 0.54 6.27 16 20 N -0.75 -38.70 5.60 -343.45 -1.92 -40.62 16 21 C -0.24 -13.77 9.99 84.03 0.84 -12.93 16 22 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 23 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 24 N -0.97 -60.69 13.06 21.65 0.28 -60.40 16 25 Si 0.97 46.34 29.55 68.60 2.03 48.37 16 26 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 27 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 28 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 29 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 30 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 1.97 6.55 -2.38 -0.02 1.96 16 32 H 0.15 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.15 0.38 8.06 -2.38 -0.02 0.36 16 34 H 0.13 1.54 8.04 -2.39 -0.02 1.52 16 35 H 0.22 1.32 7.46 -2.91 -0.02 1.30 16 36 H 0.41 5.73 7.53 -92.71 -0.70 5.03 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.06 1.78 7.75 -2.39 -0.02 1.76 16 44 H 0.03 1.01 8.14 -2.39 -0.02 1.00 16 45 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.37 20.61 7.67 -92.71 -0.71 19.90 16 47 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -80.42 403.42 4.05 -76.37 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -0.41 Total: 27.21 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 6.41 Total: 3.98 kcal Atomic # 7 Polarization: -125.69 SS G_CDS: -5.49 Total: -131.18 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.06 Total: -18.80 kcal Atomic # 9 Polarization: -7.52 SS G_CDS: 1.56 Total: -5.96 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -80.42 4.05 -76.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506926709.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.601 kcal (2) G-P(sol) polarization free energy of solvation -80.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds