Wall clock time and date at job start Wed Apr 1 2020 02:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35674 * 120.48799 * 2 1 4 4 C 1.40170 * 119.27467 * 179.97438 * 3 2 1 5 5 N 1.31260 * 120.35737 * 359.97438 * 4 3 2 6 6 C 1.33992 * 120.87818 * 0.02562 * 5 4 3 7 7 N 1.32491 * 132.34022 * 179.97438 * 6 5 4 8 8 C 1.33474 * 109.75255 * 180.02562 * 7 6 5 9 9 C 1.48129 * 125.32205 * 179.97438 * 8 7 6 10 10 O 1.21522 * 119.99756 * 172.28059 * 9 8 7 11 11 N 1.34770 * 120.00335 * 352.27932 * 9 8 7 12 12 C 1.46936 * 120.63048 * 353.76578 * 11 9 8 13 13 C 1.53191 * 108.77190 * 126.36684 * 12 11 9 14 14 C 1.53040 * 109.31183 * 54.63984 * 13 12 11 15 15 C 1.53039 * 109.53848 * 298.62843 * 14 13 12 16 16 H 1.09003 * 109.52379 * 301.40116 * 15 14 13 17 17 C 1.52997 * 109.49969 * 181.31938 * 15 14 13 18 18 N 1.46496 * 109.47321 * 175.16122 * 17 15 14 19 19 C 1.36934 * 120.00207 * 179.97438 * 18 17 15 20 20 H 1.08007 * 119.99817 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00260 * 180.02562 * 19 18 17 22 22 N 1.31614 * 119.99634 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99852 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47094 * 269.99891 * 23 21 19 25 25 H 1.48494 * 109.47524 * 30.00271 * 23 21 19 26 26 H 1.48507 * 109.46936 * 150.00135 * 23 21 19 27 27 C 1.46927 * 120.63430 * 173.74530 * 11 9 8 28 28 N 1.31982 * 109.35033 * 0.26197 * 8 7 6 29 29 N 1.36171 * 120.48550 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47228 * 90.00362 * 1 2 3 31 31 H 1.09000 * 109.46855 * 209.99993 * 1 2 3 32 32 H 1.09002 * 109.46833 * 329.99906 * 1 2 3 33 33 H 1.08008 * 120.36509 * 359.95515 * 3 2 1 34 34 H 1.08007 * 119.82568 * 179.97438 * 4 3 2 35 35 H 1.08998 * 109.58508 * 246.15657 * 12 11 9 36 36 H 1.09003 * 109.58278 * 6.43786 * 12 11 9 37 37 H 1.09008 * 109.49527 * 174.58722 * 13 12 11 38 38 H 1.08991 * 109.50096 * 294.64833 * 13 12 11 39 39 H 1.09003 * 109.45990 * 178.60648 * 14 13 12 40 40 H 1.09000 * 109.46272 * 58.65514 * 14 13 12 41 41 H 1.09003 * 109.47020 * 55.15828 * 17 15 14 42 42 H 1.09006 * 109.47124 * 295.16664 * 17 15 14 43 43 H 0.97001 * 120.00108 * 0.02562 * 18 17 15 44 44 H 0.97007 * 120.00407 * 0.02562 * 22 21 19 45 45 H 1.08990 * 109.58814 * 113.84272 * 27 11 9 46 46 H 1.09000 * 109.70045 * 353.48529 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1691 0.0000 4 6 3.5967 1.1395 0.0005 5 7 4.2360 -0.0070 0.0016 6 6 3.5665 -1.1676 0.0016 7 7 3.9689 -2.4299 0.0020 8 6 2.9090 -3.2413 0.0012 9 6 2.9636 -4.7216 0.0009 10 8 1.9438 -5.3672 0.1416 11 7 4.1443 -5.3523 -0.1554 12 6 5.3641 -4.5927 -0.4622 13 6 6.4402 -4.9514 0.5674 14 6 6.6339 -6.4693 0.5892 15 6 5.3252 -7.1464 1.0027 16 1 5.0229 -6.7851 1.9856 17 6 5.5289 -8.6618 1.0560 18 7 4.3117 -9.3007 1.5625 19 6 4.2585 -10.6623 1.6976 20 1 5.1140 -11.2652 1.4312 21 6 3.1049 -11.2677 2.1770 22 7 2.0626 -10.5328 2.5022 23 14 3.0327 -13.1250 2.3620 24 1 2.5281 -13.7287 1.1025 25 1 4.3924 -13.6470 2.6512 26 1 2.1198 -13.4760 3.4795 27 6 4.2364 -6.8126 -0.0220 28 7 1.8049 -2.5183 -0.0054 29 7 2.1978 -1.1735 0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6693 2.1125 -0.0007 34 1 4.1536 2.0649 0.0001 35 1 5.7139 -4.8512 -1.4616 36 1 5.1511 -3.5247 -0.4144 37 1 7.3791 -4.4687 0.2956 38 1 6.1280 -4.6098 1.5542 39 1 7.4167 -6.7253 1.3033 40 1 6.9226 -6.8129 -0.4042 41 1 6.3632 -8.8932 1.7183 42 1 5.7455 -9.0348 0.0549 43 1 3.5432 -8.7592 1.8014 44 1 2.1002 -9.5682 2.4064 45 1 4.4942 -7.2521 -0.9854 46 1 3.2805 -7.2116 0.3176 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690434542.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:51 Heat of formation + Delta-G solvation = 130.609111 kcal Electronic energy + Delta-G solvation = -29853.631314 eV Core-core repulsion = 25781.937967 eV Total energy + Delta-G solvation = -4071.693347 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.44705 -40.34177 -39.08622 -37.58336 -35.83220 -35.07104 -33.18958 -32.21807 -31.63904 -31.44728 -29.50988 -29.11872 -26.75034 -25.24632 -24.72182 -24.25854 -23.03899 -22.26505 -21.40915 -20.37427 -19.47007 -18.97699 -18.24636 -17.38118 -17.19167 -17.02206 -16.16467 -15.87293 -15.24326 -14.85897 -14.73188 -14.56216 -14.34414 -14.15176 -13.92659 -13.76900 -13.50901 -13.38277 -13.25215 -13.04016 -12.96977 -12.74642 -12.43502 -12.39966 -12.02437 -11.61840 -11.08101 -10.86830 -10.66285 -10.59135 -10.58524 -10.45481 -10.37591 -10.24171 -10.16125 -9.91928 -9.64550 -9.26376 -9.05990 -8.79732 -8.54953 -6.90069 -5.99477 -2.99391 -0.20825 0.11516 1.21568 1.44094 2.49418 2.71594 2.84376 3.17265 3.46680 3.57881 3.63314 3.63823 3.77531 3.99422 4.19727 4.46242 4.64696 4.65885 4.73911 4.75252 4.93776 5.06990 5.10015 5.14164 5.23791 5.31308 5.36274 5.47779 5.49352 5.64388 5.67846 5.72697 5.86906 5.95682 5.98969 6.01633 6.15479 6.20563 6.29731 6.44863 6.46037 6.66507 6.76165 6.86454 6.90301 7.18356 7.40981 7.90552 8.01623 8.86488 9.33875 10.20161 10.35102 11.49053 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018493 B = 0.002411 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.711942 B =11608.749342 C =12867.540068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.208 3.792 3 C -0.229 4.229 4 C 0.214 3.786 5 N -0.456 5.456 6 C 0.444 3.556 7 N -0.496 5.496 8 C 0.253 3.747 9 C 0.601 3.399 10 O -0.499 6.499 11 N -0.581 5.581 12 C 0.060 3.940 13 C -0.125 4.125 14 C -0.114 4.114 15 C -0.108 4.108 16 H 0.073 0.927 17 C 0.167 3.833 18 N -0.745 5.745 19 C -0.333 4.333 20 H 0.064 0.936 21 C -0.047 4.047 22 N -0.943 5.943 23 Si 1.084 2.916 24 H -0.296 1.296 25 H -0.295 1.295 26 H -0.288 1.288 27 C 0.122 3.878 28 N -0.265 5.265 29 N -0.328 5.328 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.176 0.824 34 H 0.194 0.806 35 H 0.063 0.937 36 H 0.150 0.850 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.024 0.976 42 H 0.022 0.978 43 H 0.367 0.633 44 H 0.257 0.743 45 H 0.073 0.927 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.481 31.998 -7.885 33.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.090 3.910 3 C -0.254 4.254 4 C 0.028 3.972 5 N -0.171 5.171 6 C 0.084 3.916 7 N -0.231 5.231 8 C -0.030 4.030 9 C 0.382 3.618 10 O -0.370 6.370 11 N -0.314 5.314 12 C -0.062 4.062 13 C -0.163 4.163 14 C -0.152 4.152 15 C -0.128 4.128 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.391 5.391 19 C -0.464 4.464 20 H 0.082 0.918 21 C -0.244 4.244 22 N -0.589 5.589 23 Si 0.915 3.085 24 H -0.224 1.224 25 H -0.222 1.222 26 H -0.214 1.214 27 C 0.001 3.999 28 N -0.098 5.098 29 N -0.108 5.108 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.194 0.806 34 H 0.211 0.789 35 H 0.081 0.919 36 H 0.166 0.834 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.042 0.958 42 H 0.039 0.961 43 H 0.201 0.799 44 H 0.068 0.932 45 H 0.092 0.908 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.714 29.325 -7.399 30.366 hybrid contribution 0.174 1.802 -0.413 1.857 sum 2.888 31.127 -7.813 32.222 Atomic orbital electron populations 1.21129 0.86032 1.05936 1.05222 1.21010 0.96935 0.81838 0.91236 1.21855 0.95755 0.97957 1.09875 1.23666 0.91789 0.95829 0.85888 1.68111 1.36114 0.94986 1.17895 1.23069 0.78409 0.93907 0.96169 1.70576 1.26878 0.96081 1.29541 1.24383 0.85743 0.96800 0.96107 1.16444 0.84548 0.81866 0.78944 1.90914 1.33279 1.64457 1.48384 1.47932 1.07268 1.08504 1.67672 1.23023 0.83926 1.01447 0.97839 1.21804 0.98448 0.96282 0.99800 1.21561 0.97191 0.94619 1.01825 1.21721 0.94686 0.97358 0.98995 0.90843 1.20574 0.90577 0.88172 0.96806 1.42434 1.12520 1.04799 1.79348 1.20039 1.01347 0.83374 1.41622 0.91770 1.25781 0.92410 1.06831 0.99403 1.70819 1.30701 1.06375 1.50967 0.83188 0.74768 0.74135 0.76424 1.22353 1.22229 1.21444 1.21849 1.01763 0.76641 0.99674 1.78951 1.19219 0.82784 1.28821 1.49049 1.09135 1.06423 1.46239 0.88277 0.88817 0.88152 0.80637 0.78942 0.91899 0.83421 0.90837 0.91701 0.91545 0.91742 0.95845 0.96053 0.79893 0.93198 0.90839 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.52 10.13 36.01 0.36 -0.15 16 2 C 0.21 1.39 6.86 -81.58 -0.56 0.83 16 3 C -0.23 -0.70 9.72 -39.77 -0.39 -1.09 16 4 C 0.21 0.89 11.27 -17.07 -0.19 0.70 16 5 N -0.46 -4.32 10.48 -13.79 -0.14 -4.46 16 6 C 0.44 5.54 8.98 -323.06 -2.90 2.64 16 7 N -0.50 -7.20 7.56 -12.24 -0.09 -7.29 16 8 C 0.25 4.11 7.67 -156.79 -1.20 2.91 16 9 C 0.60 11.00 7.71 -12.20 -0.09 10.91 16 10 O -0.50 -10.90 16.52 5.35 0.09 -10.81 16 11 N -0.58 -9.58 2.97 -173.77 -0.52 -10.09 16 12 C 0.06 0.80 6.31 -3.71 -0.02 0.78 16 13 C -0.13 -1.56 6.08 -26.61 -0.16 -1.72 16 14 C -0.11 -1.56 5.17 -26.69 -0.14 -1.70 16 15 C -0.11 -1.89 2.38 -90.50 -0.22 -2.11 16 16 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 17 C 0.17 3.54 5.65 -4.05 -0.02 3.51 16 18 N -0.74 -19.89 5.37 -59.91 -0.32 -20.21 16 19 C -0.33 -9.87 9.99 -15.06 -0.15 -10.02 16 20 H 0.06 1.86 7.83 -52.48 -0.41 1.45 16 21 C -0.05 -1.42 5.50 -17.43 -0.10 -1.52 16 22 N -0.94 -30.85 13.70 55.49 0.76 -30.09 16 23 Si 1.08 27.18 29.92 -169.99 -5.09 22.10 16 24 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.30 -6.97 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 C 0.12 2.20 5.50 -3.71 -0.02 2.18 16 28 N -0.26 -4.07 12.68 32.02 0.41 -3.66 16 29 N -0.33 -3.82 3.91 -10.07 -0.04 -3.86 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.09 8.09 -51.93 -0.42 -0.33 16 33 H 0.18 -0.24 8.06 -52.48 -0.42 -0.66 16 34 H 0.19 -0.10 8.06 -52.48 -0.42 -0.52 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.15 2.04 3.68 -79.15 -0.29 1.75 16 37 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.37 10.21 5.72 -40.82 -0.23 9.97 16 44 H 0.26 8.38 6.78 -40.82 -0.28 8.11 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 46 H 0.10 2.17 6.25 -51.93 -0.32 1.84 16 LS Contribution 377.37 15.07 5.69 5.69 Total: -1.00 -39.87 377.37 -11.31 -51.18 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.25 Total: 5.35 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: -5.80 Total: 6.15 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: 0.05 Total: -79.66 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 27.18 SS G_CDS: -5.09 Total: 22.10 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -39.87 -11.31 -51.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690434542.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.792 kcal (2) G-P(sol) polarization free energy of solvation -39.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds