Wall clock time and date at job start Wed Apr 1 2020 02:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35684 * 120.48584 * 2 1 4 4 C 1.40175 * 119.27041 * 179.97438 * 3 2 1 5 5 N 1.31260 * 120.35710 * 359.97438 * 4 3 2 6 6 C 1.33988 * 120.88104 * 359.97438 * 5 4 3 7 7 N 1.32497 * 132.34434 * 180.29381 * 6 5 4 8 8 C 1.33465 * 109.75302 * 180.11017 * 7 6 5 9 9 C 1.48126 * 125.32208 * 179.88242 * 8 7 6 10 10 O 1.21525 * 119.99904 * 179.69164 * 9 8 7 11 11 N 1.34775 * 120.00106 * 359.97186 * 9 8 7 12 12 C 1.46499 * 120.00262 * 174.28083 * 11 9 8 13 13 C 1.53002 * 110.43499 * 302.99887 * 12 11 9 14 14 N 1.46507 * 109.47108 * 307.76906 * 13 12 11 15 15 C 1.36930 * 120.00144 * 174.95595 * 14 13 12 16 16 H 1.07998 * 120.00265 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00272 * 179.97438 * 15 14 13 18 18 N 1.31616 * 120.00542 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99641 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47342 * 90.00028 * 19 17 15 21 21 H 1.48505 * 109.47199 * 209.99927 * 19 17 15 22 22 H 1.48499 * 109.47400 * 329.99754 * 19 17 15 23 23 C 1.54890 * 110.48718 * 180.46024 * 12 11 9 24 24 C 1.55237 * 102.58657 * 279.18235 * 23 12 11 25 25 C 1.54265 * 104.23510 * 322.08602 * 24 23 12 26 26 C 1.53877 * 106.59567 * 23.60777 * 25 24 23 27 27 N 1.31988 * 109.35392 * 359.61751 * 8 7 6 28 28 N 1.36159 * 120.48615 * 179.97438 * 2 1 3 29 29 H 1.08991 * 109.47256 * 270.02871 * 1 2 3 30 30 H 1.09002 * 109.46768 * 30.02711 * 1 2 3 31 31 H 1.08997 * 109.47245 * 150.02021 * 1 2 3 32 32 H 1.07999 * 120.36415 * 359.95042 * 3 2 1 33 33 H 1.07996 * 119.81594 * 179.97438 * 4 3 2 34 34 H 0.97004 * 119.99998 * 354.27612 * 11 9 8 35 35 H 1.09005 * 109.46879 * 67.76302 * 13 12 11 36 36 H 1.08997 * 109.47542 * 187.76421 * 13 12 11 37 37 H 0.97004 * 119.99512 * 354.94497 * 14 13 12 38 38 H 0.97000 * 120.00629 * 179.97438 * 18 17 15 39 39 H 1.08993 * 110.75556 * 37.57882 * 23 12 11 40 40 H 1.09007 * 110.75369 * 160.94685 * 23 12 11 41 41 H 1.09002 * 110.46790 * 203.39104 * 24 23 12 42 42 H 1.09003 * 110.46574 * 80.77403 * 24 23 12 43 43 H 1.09000 * 110.03323 * 264.32639 * 25 24 23 44 44 H 1.08996 * 110.03484 * 142.89385 * 25 24 23 45 45 H 1.09004 * 110.03094 * 240.71725 * 26 25 24 46 46 H 1.09001 * 110.02900 * 119.28898 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1693 0.0000 4 6 3.5968 1.1395 0.0005 5 7 4.2360 -0.0069 0.0016 6 6 3.5665 -1.1676 0.0026 7 7 3.9689 -2.4299 0.0087 8 6 2.9091 -3.2412 0.0044 9 6 2.9636 -4.7214 0.0066 10 8 1.9342 -5.3674 0.0079 11 7 4.1548 -5.3519 0.0127 12 6 4.2111 -6.8101 0.1412 13 6 3.5028 -7.2615 1.4201 14 7 4.0353 -6.5151 2.5628 15 6 3.4797 -6.6751 3.8041 16 1 2.6487 -7.3512 3.9407 17 6 3.9846 -5.9683 4.8868 18 7 3.4504 -6.1216 6.0798 19 14 5.4224 -4.7993 4.6506 20 1 4.9103 -3.4446 4.3224 21 1 6.2205 -4.7372 5.9014 22 1 6.2796 -5.2869 3.5403 23 6 5.6810 -7.2986 0.1346 24 6 6.0268 -7.3100 -1.3787 25 6 4.7336 -7.8036 -2.0597 26 6 3.5792 -7.4858 -1.0932 27 7 1.8048 -2.5182 0.0038 28 7 2.1978 -1.1733 0.0005 29 1 -0.3633 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3633 -0.8901 -0.5135 32 1 1.6693 2.1125 -0.0008 33 1 4.1535 2.0649 0.0001 34 1 4.9749 -4.8401 -0.0680 35 1 2.4331 -7.0721 1.3291 36 1 3.6714 -8.3276 1.5720 37 1 4.7815 -5.9076 2.4400 38 1 3.8034 -5.6280 6.8366 39 1 6.3220 -6.6019 0.6747 40 1 5.7569 -8.3010 0.5560 41 1 6.8488 -7.9980 -1.5767 42 1 6.2781 -6.3057 -1.7198 43 1 4.7899 -8.8782 -2.2335 44 1 4.5852 -7.2795 -3.0037 45 1 3.0752 -8.4062 -0.7980 46 1 2.8705 -6.8075 -1.5683 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715103180.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:34 Heat of formation + Delta-G solvation = 118.896651 kcal Electronic energy + Delta-G solvation = -30776.679548 eV Core-core repulsion = 26704.478311 eV Total energy + Delta-G solvation = -4072.201237 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.14016 -40.27256 -39.05631 -37.45818 -35.55705 -34.44922 -33.30778 -32.03383 -31.18296 -31.15476 -28.90035 -28.79064 -28.52205 -25.49240 -24.54056 -24.40366 -22.35233 -21.83843 -20.75375 -20.30692 -19.30705 -18.76475 -18.29036 -17.53907 -17.23415 -16.98105 -15.96868 -15.88443 -15.11571 -14.68271 -14.52595 -14.48946 -14.37053 -14.03690 -13.88176 -13.74719 -13.15706 -13.09516 -12.89905 -12.85307 -12.83503 -12.52739 -12.29052 -11.86910 -11.71680 -11.40089 -11.14094 -10.98911 -10.85681 -10.72239 -10.54184 -10.49833 -10.34994 -10.33848 -10.10406 -9.96718 -9.83876 -9.51675 -9.02255 -8.79115 -8.74238 -7.11453 -5.68292 -3.01809 0.03984 0.36871 1.47948 1.73596 2.79021 2.96963 3.11798 3.41687 3.46438 3.49986 3.50217 3.71453 3.89601 4.29623 4.46820 4.61405 4.66478 4.74086 4.74432 4.83593 4.88873 4.95566 4.97725 5.32167 5.40150 5.50121 5.57585 5.60918 5.64135 5.71476 5.74736 5.78198 5.83145 5.89868 5.91999 5.93936 6.03638 6.18049 6.24151 6.36807 6.47410 6.51568 6.79967 6.96451 7.10001 7.44950 7.76143 8.09413 8.31673 8.50745 9.30628 10.03053 10.23450 11.50520 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.008682 B = 0.004416 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3224.414529 B = 6339.064637 C = 8029.261325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.207 3.793 3 C -0.232 4.232 4 C 0.210 3.790 5 N -0.455 5.455 6 C 0.445 3.555 7 N -0.500 5.500 8 C 0.249 3.751 9 C 0.618 3.382 10 O -0.493 6.493 11 N -0.686 5.686 12 C 0.164 3.836 13 C 0.149 3.851 14 N -0.751 5.751 15 C -0.233 4.233 16 H 0.090 0.910 17 C 0.003 3.997 18 N -0.936 5.936 19 Si 0.880 3.120 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.276 1.276 23 C -0.121 4.121 24 C -0.126 4.126 25 C -0.122 4.122 26 C -0.124 4.124 27 N -0.265 5.265 28 N -0.328 5.328 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.175 0.825 33 H 0.192 0.808 34 H 0.407 0.593 35 H 0.053 0.947 36 H 0.035 0.965 37 H 0.359 0.641 38 H 0.257 0.743 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.399 14.399 -19.660 24.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.089 3.911 3 C -0.257 4.257 4 C 0.024 3.976 5 N -0.170 5.170 6 C 0.084 3.916 7 N -0.234 5.234 8 C -0.035 4.035 9 C 0.398 3.602 10 O -0.364 6.364 11 N -0.338 5.338 12 C 0.079 3.921 13 C 0.021 3.979 14 N -0.396 5.396 15 C -0.363 4.363 16 H 0.108 0.892 17 C -0.192 4.192 18 N -0.585 5.585 19 Si 0.711 3.289 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.159 4.159 24 C -0.164 4.164 25 C -0.160 4.160 26 C -0.163 4.163 27 N -0.098 5.098 28 N -0.110 5.110 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.192 0.808 33 H 0.209 0.791 34 H 0.243 0.757 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.192 0.808 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.096 0.904 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.728 12.897 -19.455 23.353 hybrid contribution 0.671 1.728 0.175 1.862 sum -0.057 14.625 -19.280 24.199 Atomic orbital electron populations 1.21108 0.86142 1.05609 1.05314 1.20972 0.96861 0.81910 0.91356 1.21811 0.95736 0.97881 1.10250 1.23618 0.91789 0.95764 0.86423 1.68063 1.36226 0.95022 1.17648 1.22702 0.78424 0.93650 0.96823 1.70816 1.28394 0.96400 1.27765 1.24403 0.85759 0.97095 0.96261 1.16131 0.84796 0.81542 0.77747 1.90822 1.33540 1.64352 1.47682 1.45588 1.07633 1.07798 1.72795 1.21607 0.96524 0.77779 0.96200 1.21078 0.97760 0.94867 0.84229 1.42593 1.39442 1.52230 1.05329 1.19066 1.12624 1.21196 0.83459 0.89186 1.24615 0.99202 0.99982 0.95405 1.69698 1.43780 1.45898 0.99116 0.86611 0.83659 0.81862 0.76797 1.21550 1.21729 1.20251 1.22837 0.94003 1.02799 0.96225 1.22475 0.97491 1.01156 0.95246 1.22131 0.94668 1.00811 0.98353 1.22462 0.97862 1.01195 0.94797 1.78904 1.19311 0.82757 1.28862 1.49047 1.09159 1.06439 1.46318 0.88222 0.88322 0.88950 0.80769 0.79092 0.75708 0.92907 0.94733 0.80825 0.93254 0.90729 0.89108 0.91508 0.91766 0.91771 0.92225 0.90373 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.13 36.01 0.36 -0.46 16 2 C 0.21 2.00 6.86 -81.58 -0.56 1.45 16 3 C -0.23 -1.39 9.72 -39.77 -0.39 -1.78 16 4 C 0.21 1.55 11.27 -17.07 -0.19 1.36 16 5 N -0.45 -5.99 10.48 -13.79 -0.14 -6.13 16 6 C 0.44 7.29 8.99 -323.04 -2.90 4.39 16 7 N -0.50 -9.30 10.90 -12.23 -0.13 -9.43 16 8 C 0.25 4.81 7.92 -156.79 -1.24 3.57 16 9 C 0.62 12.18 7.08 -12.20 -0.09 12.09 16 10 O -0.49 -10.74 14.03 5.34 0.07 -10.66 16 11 N -0.69 -11.89 4.54 -46.91 -0.21 -12.10 16 12 C 0.16 2.72 0.39 -130.16 -0.05 2.67 16 13 C 0.15 3.14 4.72 -4.04 -0.02 3.12 16 14 N -0.75 -18.95 5.11 -59.90 -0.31 -19.25 16 15 C -0.23 -7.01 10.47 -15.06 -0.16 -7.17 16 16 H 0.09 2.90 8.06 -52.49 -0.42 2.47 16 17 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 18 N -0.94 -30.79 13.97 55.49 0.78 -30.01 16 19 Si 0.88 23.72 27.73 -169.99 -4.71 19.01 16 20 H -0.29 -7.97 7.11 56.52 0.40 -7.57 16 21 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 22 H -0.28 -6.94 6.52 56.52 0.37 -6.57 16 23 C -0.12 -1.71 5.67 -24.55 -0.14 -1.85 16 24 C -0.13 -1.42 6.80 -24.88 -0.17 -1.59 16 25 C -0.12 -1.39 6.80 -25.61 -0.17 -1.56 16 26 C -0.12 -1.77 5.68 -25.61 -0.15 -1.92 16 27 N -0.27 -4.88 12.67 32.02 0.41 -4.47 16 28 N -0.33 -4.93 3.91 -10.07 -0.04 -4.97 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.10 0.28 8.09 -51.93 -0.42 -0.14 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.17 0.22 8.06 -52.49 -0.42 -0.20 16 33 H 0.19 0.46 8.06 -52.49 -0.42 0.04 16 34 H 0.41 6.51 8.18 -40.82 -0.33 6.17 16 35 H 0.05 1.24 6.48 -51.93 -0.34 0.91 16 36 H 0.03 0.71 8.02 -51.93 -0.42 0.30 16 37 H 0.36 8.91 5.13 -40.82 -0.21 8.70 16 38 H 0.26 8.07 8.31 -40.82 -0.34 7.73 16 39 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 40 H 0.09 1.27 7.97 -51.93 -0.41 0.85 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 1.09 7.84 -51.93 -0.41 0.68 16 46 H 0.07 1.17 6.63 -51.93 -0.34 0.82 16 LS Contribution 379.83 15.07 5.72 5.72 Total: -1.00 -40.22 379.83 -10.80 -51.02 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -6.27 Total: 8.96 kcal Atomic # 6 Polarization: 18.28 SS G_CDS: -5.96 Total: 12.33 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: 0.34 Total: -86.38 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.07 Total: -10.66 kcal Atomic # 14 Polarization: 23.72 SS G_CDS: -4.71 Total: 19.01 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -40.22 -10.80 -51.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715103180.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.915 kcal (2) G-P(sol) polarization free energy of solvation -40.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds