Wall clock time and date at job start Wed Apr 1 2020 03:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40169 * 120.36824 * 2 1 4 4 N 1.31255 * 120.36018 * 180.02562 * 3 2 1 5 5 C 1.33984 * 120.88138 * 359.97438 * 4 3 2 6 6 N 1.32501 * 132.34274 * 179.97438 * 5 4 3 7 7 C 1.33471 * 109.75142 * 180.02562 * 6 5 4 8 8 C 1.48127 * 125.32429 * 179.97438 * 7 6 5 9 9 O 1.21523 * 120.00348 * 180.02562 * 8 7 6 10 10 N 1.34773 * 119.99937 * 359.75435 * 8 7 6 11 11 C 1.47426 * 125.64718 * 355.09354 * 10 8 7 12 12 C 1.54908 * 104.83150 * 155.83825 * 11 10 8 13 13 C 1.55155 * 101.58419 * 37.01094 * 12 11 10 14 14 C 1.47023 * 125.65272 * 174.78955 * 10 8 7 15 15 H 1.09000 * 109.87981 * 300.51511 * 14 10 8 16 16 C 1.53009 * 109.87946 * 61.67459 * 14 10 8 17 17 N 1.46498 * 109.47042 * 184.27338 * 16 14 10 18 18 C 1.46503 * 120.00070 * 274.19489 * 17 16 14 19 19 C 1.36938 * 120.00038 * 94.18830 * 17 16 14 20 20 H 1.07997 * 119.99925 * 358.21370 * 19 17 16 21 21 C 1.38810 * 119.99648 * 178.20847 * 19 17 16 22 22 N 1.31621 * 120.00485 * 33.27627 * 21 19 17 23 23 Si 1.86800 * 119.99755 * 213.27781 * 21 19 17 24 24 H 1.48502 * 109.47381 * 95.00020 * 23 21 19 25 25 H 1.48502 * 109.47426 * 215.00100 * 23 21 19 26 26 H 1.48499 * 109.47318 * 335.00204 * 23 21 19 27 27 N 1.31990 * 109.35176 * 0.26591 * 7 6 5 28 28 N 1.36869 * 120.22209 * 0.02562 * 5 4 3 29 29 C 1.35679 * 120.36194 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46942 * 89.99892 * 1 2 3 31 31 H 1.08995 * 109.46974 * 209.99673 * 1 2 3 32 32 H 1.08992 * 109.46770 * 329.99849 * 1 2 3 33 33 H 1.08004 * 119.81552 * 0.05066 * 3 2 1 34 34 H 1.09002 * 110.36878 * 274.67802 * 11 10 8 35 35 H 1.09000 * 110.36796 * 36.99953 * 11 10 8 36 36 H 1.09006 * 111.00630 * 155.08291 * 12 11 10 37 37 H 1.08997 * 111.00409 * 278.93142 * 12 11 10 38 38 H 1.09002 * 110.72070 * 82.86127 * 13 12 11 39 39 H 1.08993 * 110.72231 * 205.95548 * 13 12 11 40 40 H 1.09000 * 109.47199 * 304.27093 * 16 14 10 41 41 H 1.08997 * 109.47055 * 64.27184 * 16 14 10 42 42 H 1.08997 * 109.47258 * 93.36026 * 18 17 16 43 43 H 1.08993 * 109.47037 * 213.36902 * 18 17 16 44 44 H 1.09004 * 109.46685 * 333.36333 * 18 17 16 45 45 H 0.96995 * 119.99836 * 179.97438 * 22 21 19 46 46 H 1.07996 * 120.48840 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2094 0.0000 4 7 3.5282 1.2092 -0.0005 5 6 4.2157 0.0592 -0.0005 6 7 5.5143 -0.2043 -0.0014 7 6 5.7065 -1.5251 -0.0015 8 6 7.0259 -2.1985 -0.0029 9 8 7.0886 -3.4121 -0.0034 10 7 8.1567 -1.4653 -0.0093 11 6 8.2279 0.0032 -0.1177 12 6 9.5838 0.3832 0.5279 13 6 10.4872 -0.7922 0.0700 14 6 9.5233 -1.9970 0.0971 15 1 9.6365 -2.5437 1.0332 16 6 9.8159 -2.9207 -1.0871 17 7 11.1400 -3.5247 -0.9197 18 6 12.3338 -2.8126 -1.3827 19 6 11.2620 -4.7547 -0.3305 20 1 10.3850 -5.2668 0.0370 21 6 12.5129 -5.3434 -0.2055 22 7 13.5771 -4.5932 -0.0130 23 14 12.6859 -7.2004 -0.3106 24 1 13.0347 -7.5872 -1.7013 25 1 13.7586 -7.6507 0.6122 26 1 11.4018 -7.8397 0.0736 27 7 4.5372 -2.1373 -0.0065 28 7 3.5542 -1.1390 -0.0005 29 6 2.1928 -1.1707 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3632 0.8899 0.5138 33 1 1.6786 2.1464 0.0008 34 1 8.2074 0.3078 -1.1641 35 1 7.4052 0.4643 0.4287 36 1 9.9502 1.3326 0.1373 37 1 9.5041 0.4144 1.6145 38 1 10.8649 -0.6184 -0.9376 39 1 11.3105 -0.9407 0.7686 40 1 9.0612 -3.7060 -1.1304 41 1 9.7937 -2.3441 -2.0118 42 1 12.7529 -2.2330 -0.5603 43 1 13.0729 -3.5326 -1.7337 44 1 12.0633 -2.1424 -2.1987 45 1 14.4511 -5.0047 0.0747 46 1 1.6668 -2.1139 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717368204.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:49 Heat of formation + Delta-G solvation = 152.815603 kcal Electronic energy + Delta-G solvation = -29942.092063 eV Core-core repulsion = 25871.361662 eV Total energy + Delta-G solvation = -4070.730401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.29801 -40.12870 -39.12019 -37.25726 -35.32281 -35.11728 -33.56912 -31.66934 -31.28869 -31.10986 -29.06834 -27.79311 -26.12720 -25.79929 -25.05422 -24.37138 -23.31591 -22.19081 -20.97092 -20.46152 -19.39856 -18.49159 -18.38115 -17.10665 -16.92412 -16.53734 -16.31140 -15.98532 -15.04570 -14.71196 -14.57545 -14.42286 -14.04725 -13.83086 -13.59811 -13.38797 -13.17347 -13.08241 -13.00853 -12.90932 -12.82808 -12.52495 -12.16429 -11.91637 -11.78966 -11.35840 -11.07857 -10.82938 -10.72164 -10.52266 -10.44296 -10.33543 -10.26407 -10.08888 -10.00753 -9.93690 -9.69242 -9.64657 -9.18611 -8.46703 -8.11967 -6.88261 -5.77323 -2.90383 -0.12636 0.17010 1.34555 1.58887 2.62614 2.79435 2.98491 3.34891 3.50209 3.58360 3.61275 3.64924 3.73051 4.03335 4.15325 4.39109 4.62248 4.64652 4.87722 4.92645 5.04396 5.14966 5.19578 5.28104 5.34067 5.38038 5.53433 5.58784 5.65911 5.67627 5.77545 5.87632 6.01379 6.12485 6.20068 6.36289 6.37442 6.55979 6.62958 6.77625 6.83784 6.91321 7.07943 7.36142 7.45349 7.67651 7.73130 7.98396 8.22458 8.40041 9.29271 9.96943 10.41099 11.32701 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.021112 B = 0.002452 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.921141 B =11414.687995 C =12534.644257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.188 4.188 3 C 0.211 3.789 4 N -0.445 5.445 5 C 0.434 3.566 6 N -0.493 5.493 7 C 0.253 3.747 8 C 0.613 3.387 9 O -0.498 6.498 10 N -0.585 5.585 11 C 0.094 3.906 12 C -0.136 4.136 13 C -0.114 4.114 14 C 0.114 3.886 15 H 0.081 0.919 16 C 0.145 3.855 17 N -0.597 5.597 18 C 0.151 3.849 19 C -0.253 4.253 20 H 0.079 0.921 21 C 0.004 3.996 22 N -0.892 5.892 23 Si 0.880 3.120 24 H -0.289 1.289 25 H -0.295 1.295 26 H -0.279 1.279 27 N -0.268 5.268 28 N -0.326 5.326 29 C 0.168 3.832 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.192 0.808 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.037 0.963 42 H 0.015 0.985 43 H 0.067 0.933 44 H -0.001 1.001 45 H 0.252 0.748 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.957 17.072 -0.133 31.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.195 4.195 3 C 0.024 3.976 4 N -0.159 5.159 5 C 0.073 3.927 6 N -0.228 5.228 7 C -0.030 4.030 8 C 0.394 3.606 9 O -0.369 6.369 10 N -0.319 5.319 11 C -0.029 4.029 12 C -0.175 4.175 13 C -0.152 4.152 14 C 0.009 3.991 15 H 0.099 0.901 16 C 0.016 3.984 17 N -0.319 5.319 18 C 0.006 3.994 19 C -0.382 4.382 20 H 0.097 0.903 21 C -0.194 4.194 22 N -0.537 5.537 23 Si 0.710 3.290 24 H -0.217 1.217 25 H -0.222 1.222 26 H -0.204 1.204 27 N -0.101 5.101 28 N -0.106 5.106 29 C 0.031 3.969 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.209 0.791 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.055 0.945 42 H 0.033 0.967 43 H 0.085 0.915 44 H 0.017 0.983 45 H 0.062 0.938 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -25.682 16.357 -0.125 30.449 hybrid contribution -0.561 -1.449 0.087 1.556 sum -26.242 14.908 -0.039 30.181 Atomic orbital electron populations 1.20638 0.86971 1.04332 1.03633 1.20656 0.99402 0.92021 1.07451 1.23621 0.88111 0.98923 0.86960 1.68084 1.08699 1.22397 1.16684 1.22868 0.89574 0.82869 0.97340 1.71029 1.10132 1.13794 1.27823 1.24429 0.95047 0.87500 0.96062 1.15881 0.79843 0.85417 0.79498 1.90903 1.85116 1.11887 1.49003 1.48441 1.05557 1.08382 1.69497 1.22673 0.99198 0.79601 1.01381 1.22841 0.94867 0.98946 1.00805 1.22641 0.97274 0.92606 1.02663 1.22953 0.77144 0.95825 1.03150 0.90057 1.21136 0.88884 0.95106 0.93230 1.44125 1.00277 1.18786 1.68721 1.21109 0.89005 0.94926 0.94368 1.19309 0.93337 0.91620 1.33892 0.90296 1.24658 0.95549 0.97654 1.01531 1.70314 0.98972 1.34076 1.50343 0.86552 0.77296 0.87535 0.77616 1.21666 1.22236 1.20416 1.79015 0.95147 1.06708 1.29251 1.49059 1.07065 1.08895 1.45538 1.22061 0.79391 1.01678 0.93740 0.89999 0.90497 0.89900 0.79135 0.91472 0.88008 0.90162 0.91029 0.90648 0.89771 0.91557 0.94461 0.96721 0.91475 0.98286 0.93814 0.79866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.01 10.03 36.01 0.36 0.35 16 2 C -0.19 -0.74 5.87 -104.81 -0.61 -1.35 16 3 C 0.21 1.06 10.96 -17.07 -0.19 0.87 16 4 N -0.45 -4.54 10.48 -13.79 -0.14 -4.68 16 5 C 0.43 5.76 8.98 -323.05 -2.90 2.85 16 6 N -0.49 -7.68 8.15 -12.23 -0.10 -7.78 16 7 C 0.25 4.36 7.78 -156.78 -1.22 3.14 16 8 C 0.61 11.88 7.69 -12.20 -0.09 11.79 16 9 O -0.50 -11.32 15.86 5.35 0.08 -11.24 16 10 N -0.58 -10.47 3.07 -164.02 -0.50 -10.97 16 11 C 0.09 1.36 6.30 -2.53 -0.02 1.35 16 12 C -0.14 -1.82 7.08 -24.58 -0.17 -1.99 16 13 C -0.11 -1.91 5.18 -24.90 -0.13 -2.04 16 14 C 0.11 2.25 3.16 -66.95 -0.21 2.04 16 15 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 16 C 0.15 3.27 5.21 -4.04 -0.02 3.25 16 17 N -0.60 -15.52 2.88 -181.12 -0.52 -16.05 16 18 C 0.15 3.73 7.79 59.85 0.47 4.19 16 19 C -0.25 -7.32 9.64 -15.06 -0.15 -7.47 16 20 H 0.08 2.34 8.00 -52.49 -0.42 1.92 16 21 C 0.00 0.11 4.84 -17.43 -0.08 0.03 16 22 N -0.89 -26.35 10.80 55.49 0.60 -25.75 16 23 Si 0.88 22.68 29.66 -169.99 -5.04 17.64 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 26 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 27 N -0.27 -4.36 12.78 32.02 0.41 -3.95 16 28 N -0.33 -4.01 3.91 -13.80 -0.05 -4.06 16 29 C 0.17 1.15 10.97 -16.54 -0.18 0.97 16 30 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 31 H 0.08 -0.02 8.09 -51.93 -0.42 -0.44 16 32 H 0.08 -0.10 8.10 -51.93 -0.42 -0.52 16 33 H 0.19 0.09 8.06 -52.48 -0.42 -0.34 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.10 1.47 5.83 -51.93 -0.30 1.17 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 1.26 7.01 -51.93 -0.36 0.90 16 39 H 0.08 1.52 8.00 -51.93 -0.42 1.10 16 40 H 0.07 1.63 6.41 -51.93 -0.33 1.30 16 41 H 0.04 0.79 7.83 -51.93 -0.41 0.38 16 42 H 0.01 0.37 7.60 -51.93 -0.39 -0.02 16 43 H 0.07 1.84 6.10 -51.93 -0.32 1.52 16 44 H 0.00 -0.03 7.71 -51.93 -0.40 -0.43 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 46 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 376.20 15.07 5.67 5.67 Total: -1.00 -37.10 376.20 -11.04 -48.14 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -6.29 Total: -4.93 kcal Atomic # 6 Polarization: 23.13 SS G_CDS: -5.15 Total: 17.97 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -0.31 Total: -73.25 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.04 Total: 17.64 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.10 -11.04 -48.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717368204.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.960 kcal (2) G-P(sol) polarization free energy of solvation -37.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds