Wall clock time and date at job start Wed Apr 1 2020 03:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40169 * 120.36824 * 2 1 4 4 N 1.31255 * 120.36018 * 180.02562 * 3 2 1 5 5 C 1.33984 * 120.88138 * 359.97438 * 4 3 2 6 6 N 1.32501 * 132.34274 * 179.97438 * 5 4 3 7 7 C 1.33471 * 109.75142 * 180.02562 * 6 5 4 8 8 C 1.48127 * 125.32429 * 179.97438 * 7 6 5 9 9 O 1.21523 * 120.00348 * 180.02562 * 8 7 6 10 10 N 1.34773 * 119.99937 * 359.75435 * 8 7 6 11 11 C 1.47426 * 125.64718 * 355.09354 * 10 8 7 12 12 C 1.54908 * 104.83150 * 155.83825 * 11 10 8 13 13 C 1.55155 * 101.58419 * 37.01094 * 12 11 10 14 14 C 1.47023 * 125.65272 * 174.78955 * 10 8 7 15 15 H 1.09000 * 109.87981 * 300.51511 * 14 10 8 16 16 C 1.53009 * 109.87946 * 61.67459 * 14 10 8 17 17 N 1.46498 * 109.47042 * 184.27338 * 16 14 10 18 18 C 1.46503 * 120.00070 * 274.19489 * 17 16 14 19 19 C 1.36938 * 120.00038 * 94.18830 * 17 16 14 20 20 H 1.07997 * 119.99925 * 358.21370 * 19 17 16 21 21 C 1.38810 * 119.99648 * 178.20847 * 19 17 16 22 22 N 1.31621 * 120.00485 * 33.27627 * 21 19 17 23 23 Si 1.86800 * 119.99755 * 213.27781 * 21 19 17 24 24 H 1.48502 * 109.47381 * 95.00020 * 23 21 19 25 25 H 1.48502 * 109.47426 * 215.00100 * 23 21 19 26 26 H 1.48499 * 109.47318 * 335.00204 * 23 21 19 27 27 N 1.31990 * 109.35176 * 0.26591 * 7 6 5 28 28 N 1.36869 * 120.22209 * 0.02562 * 5 4 3 29 29 C 1.35679 * 120.36194 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46942 * 89.99892 * 1 2 3 31 31 H 1.08995 * 109.46974 * 209.99673 * 1 2 3 32 32 H 1.08992 * 109.46770 * 329.99849 * 1 2 3 33 33 H 1.08004 * 119.81552 * 0.05066 * 3 2 1 34 34 H 1.09002 * 110.36878 * 274.67802 * 11 10 8 35 35 H 1.09000 * 110.36796 * 36.99953 * 11 10 8 36 36 H 1.09006 * 111.00630 * 155.08291 * 12 11 10 37 37 H 1.08997 * 111.00409 * 278.93142 * 12 11 10 38 38 H 1.09002 * 110.72070 * 82.86127 * 13 12 11 39 39 H 1.08993 * 110.72231 * 205.95548 * 13 12 11 40 40 H 1.09000 * 109.47199 * 304.27093 * 16 14 10 41 41 H 1.08997 * 109.47055 * 64.27184 * 16 14 10 42 42 H 1.08997 * 109.47258 * 93.36026 * 18 17 16 43 43 H 1.08993 * 109.47037 * 213.36902 * 18 17 16 44 44 H 1.09004 * 109.46685 * 333.36333 * 18 17 16 45 45 H 0.96995 * 119.99836 * 179.97438 * 22 21 19 46 46 H 1.07996 * 120.48840 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2094 0.0000 4 7 3.5282 1.2092 -0.0005 5 6 4.2157 0.0592 -0.0005 6 7 5.5143 -0.2043 -0.0014 7 6 5.7065 -1.5251 -0.0015 8 6 7.0259 -2.1985 -0.0029 9 8 7.0886 -3.4121 -0.0034 10 7 8.1567 -1.4653 -0.0093 11 6 8.2279 0.0032 -0.1177 12 6 9.5838 0.3832 0.5279 13 6 10.4872 -0.7922 0.0700 14 6 9.5233 -1.9970 0.0971 15 1 9.6365 -2.5437 1.0332 16 6 9.8159 -2.9207 -1.0871 17 7 11.1400 -3.5247 -0.9197 18 6 12.3338 -2.8126 -1.3827 19 6 11.2620 -4.7547 -0.3305 20 1 10.3850 -5.2668 0.0370 21 6 12.5129 -5.3434 -0.2055 22 7 13.5771 -4.5932 -0.0130 23 14 12.6859 -7.2004 -0.3106 24 1 13.0347 -7.5872 -1.7013 25 1 13.7586 -7.6507 0.6122 26 1 11.4018 -7.8397 0.0736 27 7 4.5372 -2.1373 -0.0065 28 7 3.5542 -1.1390 -0.0005 29 6 2.1928 -1.1707 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3632 0.8899 0.5138 33 1 1.6786 2.1464 0.0008 34 1 8.2074 0.3078 -1.1641 35 1 7.4052 0.4643 0.4287 36 1 9.9502 1.3326 0.1373 37 1 9.5041 0.4144 1.6145 38 1 10.8649 -0.6184 -0.9376 39 1 11.3105 -0.9407 0.7686 40 1 9.0612 -3.7060 -1.1304 41 1 9.7937 -2.3441 -2.0118 42 1 12.7529 -2.2330 -0.5603 43 1 13.0729 -3.5326 -1.7337 44 1 12.0633 -2.1424 -2.1987 45 1 14.4511 -5.0047 0.0747 46 1 1.6668 -2.1139 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717368204.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:48 Heat of formation + Delta-G solvation = 129.943956 kcal Electronic energy + Delta-G solvation = -29943.083852 eV Core-core repulsion = 25871.361662 eV Total energy + Delta-G solvation = -4071.722190 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.18818 -41.44831 -40.02873 -38.79037 -37.22011 -35.87802 -34.27679 -33.57716 -32.67135 -32.10530 -30.72823 -28.44851 -28.08342 -26.88336 -26.49981 -25.44891 -24.03725 -23.52891 -22.73274 -21.86053 -20.55498 -19.55259 -19.19589 -18.77700 -18.08424 -18.02106 -17.59806 -16.94384 -16.61614 -16.28244 -15.74191 -15.56032 -15.23081 -15.14234 -14.82132 -14.53470 -14.45781 -14.35659 -14.00032 -13.72337 -13.65857 -13.60213 -13.46933 -13.24485 -13.05972 -12.92177 -12.80377 -12.59967 -12.38368 -12.22954 -12.09018 -11.93860 -11.72810 -11.61666 -11.40901 -11.32957 -11.10058 -10.88016 -10.41971 -9.91595 -9.88847 -8.97704 -7.99350 -5.13671 -0.80043 -0.56741 0.50777 0.51778 1.42067 1.44729 1.47809 1.55243 1.85324 2.06331 2.24136 2.49994 2.75371 3.10217 3.12716 3.33639 3.60853 3.71771 3.73523 3.81154 3.92215 4.03959 4.15015 4.31202 4.37142 4.39804 4.45690 4.66467 4.77174 4.81720 4.82003 4.87581 4.95077 4.99519 5.01994 5.04347 5.06252 5.07882 5.15501 5.34752 5.40623 5.42148 5.42937 5.58759 5.73570 6.12184 6.21053 6.27246 6.44914 6.78549 7.10333 7.84680 8.24004 9.09340 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.021112 B = 0.002452 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.921141 B =11414.687995 C =12534.644257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.147 4.147 3 C 0.226 3.774 4 N -0.472 5.472 5 C 0.420 3.580 6 N -0.513 5.513 7 C 0.236 3.764 8 C 0.609 3.391 9 O -0.548 6.548 10 N -0.583 5.583 11 C 0.096 3.904 12 C -0.119 4.119 13 C -0.106 4.106 14 C 0.122 3.878 15 H 0.042 0.958 16 C 0.150 3.850 17 N -0.610 5.610 18 C 0.165 3.835 19 C -0.269 4.269 20 H 0.059 0.941 21 C -0.038 4.038 22 N -0.913 5.913 23 Si 0.943 3.057 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.281 1.281 27 N -0.302 5.302 28 N -0.325 5.325 29 C 0.132 3.868 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.246 0.754 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.036 0.964 41 H 0.056 0.944 42 H 0.005 0.995 43 H 0.039 0.961 44 H 0.032 0.968 45 H 0.253 0.747 46 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.330 20.149 -0.584 36.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.154 4.154 3 C 0.042 3.958 4 N -0.187 5.187 5 C 0.061 3.939 6 N -0.249 5.249 7 C -0.048 4.048 8 C 0.392 3.608 9 O -0.423 6.423 10 N -0.315 5.315 11 C -0.025 4.025 12 C -0.157 4.157 13 C -0.144 4.144 14 C 0.017 3.983 15 H 0.061 0.939 16 C 0.023 3.977 17 N -0.334 5.334 18 C 0.021 3.979 19 C -0.398 4.398 20 H 0.077 0.923 21 C -0.235 4.235 22 N -0.559 5.559 23 Si 0.771 3.229 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.206 1.206 27 N -0.137 5.137 28 N -0.105 5.105 29 C -0.002 4.002 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.128 0.872 33 H 0.262 0.738 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.135 0.865 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.023 0.977 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.062 0.938 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -29.135 19.500 -0.581 35.064 hybrid contribution 0.071 -2.243 0.228 2.255 sum -29.065 17.258 -0.353 33.804 Atomic orbital electron populations 1.20868 0.83272 1.06209 1.05143 1.21252 1.01358 0.90366 1.02437 1.24720 0.86619 1.01477 0.83012 1.68253 1.10894 1.20716 1.18854 1.23048 0.89353 0.83948 0.97564 1.70815 1.12188 1.12759 1.29121 1.23679 0.94074 0.88377 0.98657 1.16242 0.81074 0.85043 0.78409 1.90853 1.86193 1.14041 1.51261 1.48449 1.04439 1.09903 1.68736 1.22867 1.00120 0.77111 1.02415 1.22844 0.92817 0.98901 1.01155 1.22530 0.96515 0.92536 1.02869 1.22522 0.79381 0.96691 0.99739 0.93933 1.21094 0.86710 0.94817 0.95100 1.44231 1.01702 1.18733 1.68717 1.20897 0.87908 0.94255 0.94852 1.19328 0.92810 0.93215 1.34468 0.92341 1.25262 0.95275 1.01226 1.01702 1.70391 0.99113 1.35326 1.51025 0.85611 0.76966 0.82769 0.77535 1.21171 1.21721 1.20631 1.78804 0.95750 1.08799 1.30380 1.49037 1.08246 1.07685 1.45560 1.22924 0.77479 1.04352 0.95430 0.88316 0.89501 0.87232 0.73796 0.90222 0.87522 0.86459 0.90607 0.89954 0.91133 0.94593 0.92570 0.97651 0.94262 0.94922 0.93804 0.77484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.52 10.03 71.24 0.71 1.24 16 2 C -0.15 -0.54 5.87 -19.99 -0.12 -0.66 16 3 C 0.23 1.26 10.96 85.25 0.93 2.19 16 4 N -0.47 -8.53 10.48 -197.54 -2.07 -10.60 16 5 C 0.42 10.99 8.98 261.57 2.35 13.34 16 6 N -0.51 -16.36 8.15 -192.62 -1.57 -17.93 16 7 C 0.24 8.61 7.78 137.39 1.07 9.68 16 8 C 0.61 25.48 7.69 86.87 0.67 26.15 16 9 O -0.55 -27.35 15.86 -3.79 -0.06 -27.41 16 10 N -0.58 -21.88 3.07 -791.11 -2.42 -24.31 16 11 C 0.10 2.74 6.30 86.85 0.55 3.28 16 12 C -0.12 -2.99 7.08 31.99 0.23 -2.76 16 13 C -0.11 -3.56 5.18 31.78 0.16 -3.40 16 14 C 0.12 5.08 3.16 45.34 0.14 5.22 16 15 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 16 C 0.15 7.12 5.21 86.38 0.45 7.57 16 17 N -0.61 -33.00 2.88 -726.93 -2.09 -35.09 16 18 C 0.17 8.30 7.79 127.77 1.00 9.30 16 19 C -0.27 -16.28 9.64 84.03 0.81 -15.47 16 20 H 0.06 3.70 8.00 -2.91 -0.02 3.68 16 21 C -0.04 -2.29 4.84 84.86 0.41 -1.88 16 22 N -0.91 -55.11 10.80 21.65 0.23 -54.88 16 23 Si 0.94 48.06 29.66 68.60 2.03 50.10 16 24 H -0.28 -14.25 7.11 99.48 0.71 -13.55 16 25 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 26 H -0.28 -14.30 7.11 99.48 0.71 -13.59 16 27 N -0.30 -10.40 12.78 -52.60 -0.67 -11.07 16 28 N -0.33 -7.99 3.91 -197.59 -0.77 -8.76 16 29 C 0.13 1.55 10.97 83.43 0.92 2.47 16 30 H 0.10 -0.67 8.14 -2.39 -0.02 -0.69 16 31 H 0.09 -0.50 8.09 -2.39 -0.02 -0.52 16 32 H 0.11 -1.02 8.10 -2.39 -0.02 -1.04 16 33 H 0.25 -1.42 8.06 -2.91 -0.02 -1.44 16 34 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.11 3.04 5.83 -2.39 -0.01 3.03 16 36 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.08 2.65 7.01 -2.39 -0.02 2.63 16 39 H 0.07 2.57 8.00 -2.39 -0.02 2.56 16 40 H 0.04 1.90 6.41 -2.39 -0.02 1.89 16 41 H 0.06 2.41 7.83 -2.39 -0.02 2.39 16 42 H 0.01 0.27 7.60 -2.39 -0.02 0.25 16 43 H 0.04 2.18 6.10 -2.39 -0.01 2.16 16 44 H 0.03 1.39 7.71 -2.39 -0.02 1.37 16 45 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 46 H 0.21 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -89.05 376.20 3.90 -85.16 By element: Atomic # 1 Polarization: -2.50 SS G_CDS: 1.01 Total: -1.49 kcal Atomic # 6 Polarization: 46.00 SS G_CDS: 10.28 Total: 56.28 kcal Atomic # 7 Polarization: -153.26 SS G_CDS: -9.37 Total: -162.63 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.06 Total: -27.41 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.10 kcal Total: -89.05 3.90 -85.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717368204.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.101 kcal (2) G-P(sol) polarization free energy of solvation -89.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds