Wall clock time and date at job start Wed Apr 1 2020 02:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28780 * 125.86790 * 2 1 4 4 N 1.28693 * 111.75229 * 179.74691 * 3 2 1 5 5 C 1.34381 * 109.15519 * 0.41743 * 4 3 2 6 6 C 1.37204 * 125.86890 * 180.02562 * 2 1 3 7 7 N 1.32217 * 134.67584 * 359.97438 * 6 2 1 8 8 C 1.31578 * 121.87131 * 180.02562 * 7 6 2 9 9 C 1.38614 * 121.63427 * 359.97438 * 8 7 6 10 10 C 1.39459 * 119.37778 * 0.02562 * 9 8 7 11 11 C 1.47874 * 121.11433 * 179.97438 * 10 9 8 12 12 O 1.21546 * 119.99202 * 135.22751 * 11 10 9 13 13 N 1.34767 * 120.00331 * 315.22977 * 11 10 9 14 14 C 1.47020 * 125.64905 * 4.87914 * 13 11 10 15 15 C 1.54323 * 107.27173 * 181.02285 * 14 13 11 16 16 C 1.55152 * 102.94202 * 22.19445 * 15 14 13 17 17 C 1.53002 * 111.00579 * 82.60957 * 16 15 14 18 18 C 1.53003 * 111.00575 * 206.42367 * 16 15 14 19 19 N 1.46500 * 109.47579 * 180.02562 * 18 16 15 20 20 C 1.36927 * 120.00257 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00316 * 359.97438 * 20 19 18 22 22 C 1.38814 * 120.00056 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00009 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00004 * 359.97438 * 22 20 19 25 25 H 1.48493 * 109.46988 * 89.99953 * 24 22 20 26 26 H 1.48503 * 109.47137 * 210.00210 * 24 22 20 27 27 H 1.48506 * 109.46805 * 330.00002 * 24 22 20 28 28 C 1.47428 * 125.65107 * 184.57197 * 13 11 10 29 29 H 1.08999 * 109.47027 * 269.99682 * 1 2 3 30 30 H 1.08998 * 109.47521 * 29.99877 * 1 2 3 31 31 H 1.09003 * 109.47282 * 149.99681 * 1 2 3 32 32 H 1.08000 * 119.18701 * 180.02562 * 8 7 6 33 33 H 1.08004 * 120.31490 * 179.97438 * 9 8 7 34 34 H 1.08997 * 109.88527 * 300.44241 * 14 13 11 35 35 H 1.09002 * 109.88330 * 61.60741 * 14 13 11 36 36 H 1.09004 * 110.72095 * 140.55831 * 15 14 13 37 37 H 1.08996 * 110.72202 * 263.64963 * 15 14 13 38 38 H 1.09004 * 109.47106 * 59.99855 * 17 16 15 39 39 H 1.09000 * 109.47242 * 180.02562 * 17 16 15 40 40 H 1.09001 * 109.47253 * 299.99783 * 17 16 15 41 41 H 1.09008 * 109.46921 * 300.00171 * 18 16 15 42 42 H 1.08996 * 109.47134 * 59.99680 * 18 16 15 43 43 H 0.97003 * 119.99475 * 0.02562 * 19 18 16 44 44 H 0.96999 * 120.00235 * 179.97438 * 23 22 20 45 45 H 1.08995 * 110.36798 * 274.75130 * 28 13 11 46 46 H 1.09004 * 110.36081 * 37.07020 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2195 1.0436 0.0000 4 7 3.4676 0.7297 0.0053 5 6 3.5857 -0.6089 -0.0001 6 6 2.2689 -1.1118 -0.0005 7 7 2.0517 -2.4161 -0.0007 8 6 3.0398 -3.2849 -0.0007 9 6 4.3651 -2.8788 -0.0011 10 6 4.6631 -1.5164 -0.0009 11 6 6.0632 -1.0404 -0.0007 12 8 6.3979 -0.1372 -0.7420 13 7 6.9678 -1.6081 0.8212 14 6 6.7260 -2.7687 1.6908 15 6 8.0341 -3.0438 2.4620 16 6 8.7658 -1.6769 2.4039 17 6 8.2543 -0.7342 3.4951 18 6 10.2811 -1.8610 2.5084 19 7 10.9373 -0.5525 2.4508 20 6 12.3019 -0.4669 2.5257 21 1 12.8944 -1.3641 2.6278 22 6 12.9236 0.7730 2.4716 23 7 14.2351 0.8553 2.5442 24 14 11.8987 2.3249 2.2958 25 1 11.5436 2.8388 3.6429 26 1 12.6800 3.3538 1.5635 27 1 10.6577 2.0156 1.5409 28 6 8.3657 -1.1721 0.9927 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5139 32 1 2.8127 -4.3408 -0.0012 33 1 5.1595 -3.6104 -0.0006 34 1 5.9221 -2.5454 2.3921 35 1 6.4628 -3.6365 1.0860 36 1 7.8218 -3.3240 3.4938 37 1 8.6186 -3.8186 1.9660 38 1 8.4283 -1.1824 4.4733 39 1 8.7836 0.2166 3.4313 40 1 7.1864 -0.5649 3.3577 41 1 10.5236 -2.3474 3.4534 42 1 10.6298 -2.4796 1.6815 43 1 10.4051 0.2533 2.3595 44 1 14.6696 1.7217 2.5060 45 1 9.0004 -1.6249 0.2311 46 1 8.4323 -0.0851 0.9461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724240357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:41 Heat of formation + Delta-G solvation = 130.038375 kcal Electronic energy + Delta-G solvation = -30101.903405 eV Core-core repulsion = 26030.185310 eV Total energy + Delta-G solvation = -4071.718096 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.76311 -40.61657 -39.29666 -38.06796 -35.44356 -35.09160 -33.22311 -32.29566 -31.26764 -30.82784 -29.42617 -28.43633 -27.17542 -26.34408 -25.32660 -24.15328 -23.57793 -22.25483 -21.73228 -19.85555 -19.33798 -19.07201 -17.99549 -17.83905 -17.41821 -17.12603 -16.21459 -16.11455 -15.35517 -15.12724 -14.62218 -14.54265 -14.23371 -14.17852 -13.82202 -13.79201 -13.49264 -13.40388 -13.09659 -13.03311 -12.69041 -12.64373 -12.32274 -12.20117 -11.94846 -11.90278 -11.81940 -11.51733 -11.38235 -10.89437 -10.67601 -10.54643 -10.51142 -10.33740 -10.06853 -9.82425 -9.66108 -9.54717 -9.36319 -8.88609 -8.72682 -7.22051 -5.75049 -3.10702 -0.28132 0.44879 1.46470 1.82834 2.43216 2.67031 3.13317 3.17975 3.41820 3.46401 3.50559 3.76533 3.84624 4.02037 4.15066 4.38368 4.47470 4.49185 4.57630 4.62305 4.67069 4.79206 4.84683 5.04614 5.11745 5.13664 5.20242 5.31492 5.37244 5.50158 5.57124 5.65972 5.68589 5.75799 5.86570 5.89536 5.92451 6.01730 6.07240 6.17186 6.31199 6.47530 6.59585 6.66190 7.02961 7.31439 7.81878 7.92955 8.00091 8.43801 9.22515 9.95162 10.14061 11.43203 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.017812 B = 0.002690 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.624931 B =10405.245400 C =11400.757556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.310 5.310 3 N -0.002 5.002 4 N -0.224 5.224 5 C -0.002 4.002 6 C 0.213 3.787 7 N -0.461 5.461 8 C 0.161 3.839 9 C -0.150 4.150 10 C 0.004 3.996 11 C 0.569 3.431 12 O -0.504 6.504 13 N -0.608 5.608 14 C 0.096 3.904 15 C -0.120 4.120 16 C -0.083 4.083 17 C -0.132 4.132 18 C 0.175 3.825 19 N -0.755 5.755 20 C -0.244 4.244 21 H 0.090 0.910 22 C 0.007 3.993 23 N -0.933 5.933 24 Si 0.879 3.121 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.275 1.275 28 C 0.119 3.881 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.183 0.817 33 H 0.162 0.838 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.047 0.953 41 H 0.034 0.966 42 H 0.031 0.969 43 H 0.362 0.638 44 H 0.259 0.741 45 H 0.079 0.921 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.876 -12.977 -2.784 33.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.112 5.112 3 N 0.017 4.983 4 N -0.098 5.098 5 C -0.131 4.131 6 C -0.030 4.030 7 N -0.174 5.174 8 C -0.011 4.011 9 C -0.173 4.173 10 C -0.012 4.012 11 C 0.355 3.645 12 O -0.378 6.378 13 N -0.342 5.342 14 C -0.027 4.027 15 C -0.158 4.158 16 C -0.084 4.084 17 C -0.189 4.189 18 C 0.047 3.953 19 N -0.401 5.401 20 C -0.374 4.374 21 H 0.108 0.892 22 C -0.189 4.189 23 N -0.581 5.581 24 Si 0.709 3.291 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.201 1.201 28 C -0.002 4.002 29 H 0.110 0.890 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.199 0.801 33 H 0.180 0.820 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.195 0.805 44 H 0.069 0.931 45 H 0.097 0.903 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -31.461 -11.117 -3.226 33.523 hybrid contribution -0.075 0.387 -0.133 0.417 sum -31.536 -10.730 -3.360 33.480 Atomic orbital electron populations 1.22305 0.71214 1.06192 1.05238 1.47049 1.09204 1.01971 1.52955 1.78267 0.96933 1.10928 1.12191 1.75507 1.06953 1.10762 1.16574 1.20094 0.93325 0.92385 1.07343 1.19753 0.88315 0.89475 1.05412 1.66267 1.37784 0.98982 1.14369 1.22819 0.86780 0.98927 0.92584 1.22530 0.99343 0.94552 1.00875 1.19535 0.92506 0.92111 0.97052 1.17493 0.83520 0.82522 0.80927 1.90889 1.79355 1.28607 1.38976 1.48404 1.12411 1.31827 1.41550 1.22283 0.99268 0.88035 0.93081 1.22713 0.94553 0.97597 1.00970 1.22070 0.97375 0.94815 0.94118 1.21697 0.99858 0.99772 0.97618 1.20552 0.86639 0.89059 0.99024 1.42762 1.04622 1.02391 1.90339 1.19020 0.81074 0.94648 1.42652 0.89172 1.24649 0.95298 0.97099 1.01892 1.69693 1.07173 1.23974 1.57294 0.86637 0.79975 0.84578 0.77929 1.21038 1.21610 1.20138 1.22494 0.79522 1.01391 0.96774 0.88974 0.87685 0.87880 0.80054 0.82022 0.91353 0.91013 0.89588 0.89791 0.91959 0.91793 0.93368 0.94823 0.95135 0.80456 0.93052 0.90254 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.40 11.41 59.85 0.68 1.08 16 2 N -0.31 -3.14 3.79 -67.23 -0.26 -3.40 16 3 N 0.00 -0.02 13.07 60.35 0.79 0.77 16 4 N -0.22 -3.57 12.42 32.23 0.40 -3.17 16 5 C 0.00 -0.03 7.08 -84.73 -0.60 -0.63 16 6 C 0.21 2.39 8.08 -156.21 -1.26 1.13 16 7 N -0.46 -4.10 10.35 -12.39 -0.13 -4.22 16 8 C 0.16 0.98 11.14 -17.52 -0.20 0.78 16 9 C -0.15 -1.10 8.65 -38.99 -0.34 -1.43 16 10 C 0.00 0.05 5.50 -104.50 -0.57 -0.52 16 11 C 0.57 8.64 7.49 -12.32 -0.09 8.55 16 12 O -0.50 -9.98 17.31 5.32 0.09 -9.89 16 13 N -0.61 -7.94 3.31 -171.49 -0.57 -8.51 16 14 C 0.10 0.84 5.27 -3.07 -0.02 0.82 16 15 C -0.12 -1.14 5.91 -24.90 -0.15 -1.29 16 16 C -0.08 -1.16 0.63 -152.24 -0.10 -1.25 16 17 C -0.13 -1.89 8.42 37.16 0.31 -1.58 16 18 C 0.17 3.12 5.25 -4.04 -0.02 3.10 16 19 N -0.75 -17.49 4.98 -59.91 -0.30 -17.79 16 20 C -0.24 -6.85 10.47 -15.06 -0.16 -7.00 16 21 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 23 N -0.93 -29.51 13.97 55.49 0.78 -28.73 16 24 Si 0.88 22.69 27.74 -169.99 -4.71 17.97 16 25 H -0.28 -7.24 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 27 H -0.28 -6.82 6.52 56.52 0.37 -6.46 16 28 C 0.12 1.84 5.61 -2.41 -0.01 1.83 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.18 0.29 8.06 -52.49 -0.42 -0.13 16 33 H 0.16 0.71 5.75 -52.48 -0.30 0.41 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.41 5.93 -51.93 -0.31 0.10 16 36 H 0.09 0.69 8.05 -51.93 -0.42 0.27 16 37 H 0.08 0.72 8.04 -51.93 -0.42 0.31 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.08 6.65 -51.93 -0.35 0.73 16 40 H 0.05 0.64 7.91 -51.93 -0.41 0.23 16 41 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 42 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 43 H 0.36 8.39 4.09 -40.82 -0.17 8.22 16 44 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 45 H 0.08 1.25 7.99 -51.93 -0.41 0.84 16 46 H 0.08 1.50 8.00 -51.93 -0.42 1.08 16 LS Contribution 377.87 15.07 5.69 5.69 Total: -1.00 -38.88 377.87 -7.00 -45.88 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.17 Total: 1.72 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -2.61 Total: 3.68 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: 0.71 Total: -65.06 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.71 Total: 17.97 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.88 -7.00 -45.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724240357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.916 kcal (2) G-P(sol) polarization free energy of solvation -38.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds