Wall clock time and date at job start Wed Apr 1 2020 02:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28780 * 125.86790 * 2 1 4 4 N 1.28693 * 111.75229 * 179.74691 * 3 2 1 5 5 C 1.34381 * 109.15519 * 0.41743 * 4 3 2 6 6 C 1.37204 * 125.86890 * 180.02562 * 2 1 3 7 7 N 1.32217 * 134.67584 * 359.97438 * 6 2 1 8 8 C 1.31578 * 121.87131 * 180.02562 * 7 6 2 9 9 C 1.38614 * 121.63427 * 359.97438 * 8 7 6 10 10 C 1.39459 * 119.37778 * 0.02562 * 9 8 7 11 11 C 1.47874 * 121.11433 * 179.97438 * 10 9 8 12 12 O 1.21546 * 119.99202 * 135.22751 * 11 10 9 13 13 N 1.34767 * 120.00331 * 315.22977 * 11 10 9 14 14 C 1.47020 * 125.64905 * 4.87914 * 13 11 10 15 15 C 1.54323 * 107.27173 * 181.02285 * 14 13 11 16 16 C 1.55152 * 102.94202 * 22.19445 * 15 14 13 17 17 C 1.53002 * 111.00579 * 82.60957 * 16 15 14 18 18 C 1.53003 * 111.00575 * 206.42367 * 16 15 14 19 19 N 1.46500 * 109.47579 * 180.02562 * 18 16 15 20 20 C 1.36927 * 120.00257 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00316 * 359.97438 * 20 19 18 22 22 C 1.38814 * 120.00056 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00009 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00004 * 359.97438 * 22 20 19 25 25 H 1.48493 * 109.46988 * 89.99953 * 24 22 20 26 26 H 1.48503 * 109.47137 * 210.00210 * 24 22 20 27 27 H 1.48506 * 109.46805 * 330.00002 * 24 22 20 28 28 C 1.47428 * 125.65107 * 184.57197 * 13 11 10 29 29 H 1.08999 * 109.47027 * 269.99682 * 1 2 3 30 30 H 1.08998 * 109.47521 * 29.99877 * 1 2 3 31 31 H 1.09003 * 109.47282 * 149.99681 * 1 2 3 32 32 H 1.08000 * 119.18701 * 180.02562 * 8 7 6 33 33 H 1.08004 * 120.31490 * 179.97438 * 9 8 7 34 34 H 1.08997 * 109.88527 * 300.44241 * 14 13 11 35 35 H 1.09002 * 109.88330 * 61.60741 * 14 13 11 36 36 H 1.09004 * 110.72095 * 140.55831 * 15 14 13 37 37 H 1.08996 * 110.72202 * 263.64963 * 15 14 13 38 38 H 1.09004 * 109.47106 * 59.99855 * 17 16 15 39 39 H 1.09000 * 109.47242 * 180.02562 * 17 16 15 40 40 H 1.09001 * 109.47253 * 299.99783 * 17 16 15 41 41 H 1.09008 * 109.46921 * 300.00171 * 18 16 15 42 42 H 1.08996 * 109.47134 * 59.99680 * 18 16 15 43 43 H 0.97003 * 119.99475 * 0.02562 * 19 18 16 44 44 H 0.96999 * 120.00235 * 179.97438 * 23 22 20 45 45 H 1.08995 * 110.36798 * 274.75130 * 28 13 11 46 46 H 1.09004 * 110.36081 * 37.07020 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2195 1.0436 0.0000 4 7 3.4676 0.7297 0.0053 5 6 3.5857 -0.6089 -0.0001 6 6 2.2689 -1.1118 -0.0005 7 7 2.0517 -2.4161 -0.0007 8 6 3.0398 -3.2849 -0.0007 9 6 4.3651 -2.8788 -0.0011 10 6 4.6631 -1.5164 -0.0009 11 6 6.0632 -1.0404 -0.0007 12 8 6.3979 -0.1372 -0.7420 13 7 6.9678 -1.6081 0.8212 14 6 6.7260 -2.7687 1.6908 15 6 8.0341 -3.0438 2.4620 16 6 8.7658 -1.6769 2.4039 17 6 8.2543 -0.7342 3.4951 18 6 10.2811 -1.8610 2.5084 19 7 10.9373 -0.5525 2.4508 20 6 12.3019 -0.4669 2.5257 21 1 12.8944 -1.3641 2.6278 22 6 12.9236 0.7730 2.4716 23 7 14.2351 0.8553 2.5442 24 14 11.8987 2.3249 2.2958 25 1 11.5436 2.8388 3.6429 26 1 12.6800 3.3538 1.5635 27 1 10.6577 2.0156 1.5409 28 6 8.3657 -1.1721 0.9927 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5139 32 1 2.8127 -4.3408 -0.0012 33 1 5.1595 -3.6104 -0.0006 34 1 5.9221 -2.5454 2.3921 35 1 6.4628 -3.6365 1.0860 36 1 7.8218 -3.3240 3.4938 37 1 8.6186 -3.8186 1.9660 38 1 8.4283 -1.1824 4.4733 39 1 8.7836 0.2166 3.4313 40 1 7.1864 -0.5649 3.3577 41 1 10.5236 -2.3474 3.4534 42 1 10.6298 -2.4796 1.6815 43 1 10.4051 0.2533 2.3595 44 1 14.6696 1.7217 2.5060 45 1 9.0004 -1.6249 0.2311 46 1 8.4323 -0.0851 0.9461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724240357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:40 Heat of formation + Delta-G solvation = 99.778995 kcal Electronic energy + Delta-G solvation = -30103.215550 eV Core-core repulsion = 26030.185310 eV Total energy + Delta-G solvation = -4073.030241 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.54194 -41.61934 -40.08339 -39.20247 -36.69029 -36.17983 -34.60013 -33.46580 -32.50870 -31.98160 -30.46693 -28.98250 -28.27739 -27.75148 -26.38685 -24.87661 -24.83406 -23.47736 -22.91045 -20.69379 -20.45765 -20.16065 -19.48483 -18.72360 -18.31988 -18.07257 -17.17647 -17.10335 -16.61590 -16.23167 -15.90915 -15.63373 -15.51165 -15.20839 -14.89717 -14.67155 -14.58883 -14.21900 -14.10419 -13.95667 -13.84271 -13.80588 -13.48131 -13.43801 -13.28211 -12.96969 -12.87635 -12.76389 -12.64778 -12.25894 -12.21297 -11.92696 -11.73682 -11.60373 -11.53077 -11.46192 -10.99976 -10.65476 -10.35505 -10.15600 -9.75603 -9.27963 -8.04693 -5.35161 -1.02782 -0.20393 0.85566 0.94947 1.32180 1.35382 1.40097 1.42786 1.72735 2.40997 2.43703 2.52065 3.04272 3.11837 3.23866 3.28458 3.45175 3.55971 3.61125 3.75763 3.91440 3.97310 4.12272 4.23124 4.26274 4.30182 4.32722 4.36083 4.52952 4.54724 4.59217 4.68569 4.74878 4.78861 4.89524 4.93950 5.06235 5.06980 5.09582 5.13685 5.22754 5.30091 5.36297 5.42897 5.76686 6.20517 6.31568 6.39976 6.86643 6.98777 7.07348 7.85614 8.01002 9.16995 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.017812 B = 0.002690 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.624931 B =10405.245400 C =11400.757556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.297 5.297 3 N -0.024 5.024 4 N -0.286 5.286 5 C -0.033 4.033 6 C 0.203 3.797 7 N -0.459 5.459 8 C 0.180 3.820 9 C -0.114 4.114 10 C -0.030 4.030 11 C 0.565 3.435 12 O -0.572 6.572 13 N -0.602 5.602 14 C 0.089 3.911 15 C -0.108 4.108 16 C -0.076 4.076 17 C -0.129 4.129 18 C 0.170 3.830 19 N -0.761 5.761 20 C -0.222 4.222 21 H 0.067 0.933 22 C -0.058 4.058 23 N -0.980 5.980 24 Si 0.938 3.062 25 H -0.276 1.276 26 H -0.296 1.296 27 H -0.268 1.268 28 C 0.119 3.881 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.242 0.758 33 H 0.201 0.799 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.029 0.971 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.034 0.966 43 H 0.361 0.639 44 H 0.257 0.743 45 H 0.071 0.929 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.664 -17.311 -2.036 38.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.100 5.100 3 N -0.005 5.005 4 N -0.159 5.159 5 C -0.164 4.164 6 C -0.038 4.038 7 N -0.173 5.173 8 C 0.007 3.993 9 C -0.136 4.136 10 C -0.046 4.046 11 C 0.354 3.646 12 O -0.451 6.451 13 N -0.334 5.334 14 C -0.031 4.031 15 C -0.146 4.146 16 C -0.077 4.077 17 C -0.186 4.186 18 C 0.044 3.956 19 N -0.407 5.407 20 C -0.353 4.353 21 H 0.085 0.915 22 C -0.250 4.250 23 N -0.632 5.632 24 Si 0.767 3.233 25 H -0.202 1.202 26 H -0.223 1.223 27 H -0.193 1.193 28 C -0.003 4.003 29 H 0.130 0.870 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.258 0.742 33 H 0.218 0.782 34 H 0.104 0.896 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.195 0.805 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -35.331 -15.483 -2.441 38.651 hybrid contribution 1.030 1.485 -0.363 1.844 sum -34.301 -13.997 -2.804 37.153 Atomic orbital electron populations 1.22801 0.68278 1.07900 1.07050 1.47498 1.10659 1.01258 1.50538 1.78133 0.96769 1.12155 1.13474 1.75393 1.08361 1.12903 1.19232 1.20488 0.95275 0.91987 1.08643 1.19903 0.87382 0.90444 1.06104 1.66480 1.38653 0.97743 1.14388 1.23893 0.85495 1.00799 0.89110 1.23054 1.01234 0.92657 0.96688 1.19448 0.90037 0.94033 1.01112 1.18062 0.84910 0.81646 0.80027 1.90839 1.80661 1.31673 1.41886 1.48437 1.10947 1.32682 1.41351 1.22697 0.99379 0.87666 0.93390 1.22764 0.94137 0.94528 1.03130 1.21941 0.95014 0.97974 0.92810 1.21666 0.99942 0.98381 0.98655 1.20788 0.89040 0.86429 0.99353 1.42881 1.02997 1.04774 1.90018 1.19075 0.83100 0.93536 1.39633 0.91475 1.25313 0.96216 1.00132 1.03347 1.69838 1.08879 1.24407 1.60043 0.85667 0.78595 0.80962 0.78099 1.20237 1.22264 1.19312 1.22292 0.81422 0.98868 0.97760 0.87011 0.86218 0.85998 0.74204 0.78228 0.89643 0.86515 0.86891 0.88132 0.90208 0.95188 0.92428 0.93823 0.94771 0.80524 0.93425 0.91075 0.94316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 11.41 127.77 1.46 2.00 16 2 N -0.30 -5.83 3.79 -366.61 -1.39 -7.22 16 3 N -0.02 -0.67 13.07 37.02 0.48 -0.18 16 4 N -0.29 -9.74 12.42 -51.94 -0.64 -10.38 16 5 C -0.03 -0.93 7.08 40.06 0.28 -0.64 16 6 C 0.20 4.25 8.08 134.17 1.08 5.33 16 7 N -0.46 -6.29 10.35 -193.11 -2.00 -8.29 16 8 C 0.18 1.09 11.14 84.82 0.94 2.03 16 9 C -0.11 -1.09 8.65 22.65 0.20 -0.89 16 10 C -0.03 -0.70 5.50 -19.79 -0.11 -0.81 16 11 C 0.57 17.31 7.49 86.80 0.65 17.96 16 12 O -0.57 -24.30 17.31 -3.86 -0.07 -24.37 16 13 N -0.60 -14.90 3.31 -814.75 -2.70 -17.60 16 14 C 0.09 1.12 5.27 86.73 0.46 1.58 16 15 C -0.11 -1.53 5.91 31.78 0.19 -1.34 16 16 C -0.08 -2.00 0.63 -50.71 -0.03 -2.03 16 17 C -0.13 -3.54 8.42 71.98 0.61 -2.93 16 18 C 0.17 5.86 5.25 86.38 0.45 6.31 16 19 N -0.76 -35.52 4.98 -343.45 -1.71 -37.23 16 20 C -0.22 -12.70 10.47 84.04 0.88 -11.82 16 21 H 0.07 4.10 8.06 -2.91 -0.02 4.07 16 22 C -0.06 -3.53 5.50 84.86 0.47 -3.07 16 23 N -0.98 -63.91 13.97 21.65 0.30 -63.61 16 24 Si 0.94 48.49 27.74 68.60 1.90 50.40 16 25 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 26 H -0.30 -15.50 7.11 99.48 0.71 -14.79 16 27 H -0.27 -13.30 6.52 99.48 0.65 -12.65 16 28 C 0.12 3.70 5.61 86.93 0.49 4.19 16 29 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.24 -1.37 8.06 -2.91 -0.02 -1.39 16 33 H 0.20 0.26 5.75 -2.91 -0.02 0.25 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.12 0.47 5.93 -2.39 -0.01 0.46 16 36 H 0.11 1.10 8.05 -2.38 -0.02 1.09 16 37 H 0.10 1.17 8.04 -2.39 -0.02 1.15 16 38 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.03 1.01 6.65 -2.39 -0.02 0.99 16 40 H 0.06 1.45 7.91 -2.39 -0.02 1.44 16 41 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 42 H 0.03 1.18 8.07 -2.39 -0.02 1.16 16 43 H 0.36 17.04 4.09 -92.71 -0.38 16.66 16 44 H 0.26 16.06 8.31 -92.71 -0.77 15.28 16 45 H 0.07 2.28 7.99 -2.39 -0.02 2.26 16 46 H 0.04 1.51 8.00 -2.38 -0.02 1.50 16 Total: -1.00 -95.67 377.87 2.78 -92.89 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.59 Total: 9.71 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: 8.02 Total: 15.89 kcal Atomic # 7 Polarization: -136.86 SS G_CDS: -7.66 Total: -144.51 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.07 Total: -24.37 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 1.90 Total: 50.40 kcal Total: -95.67 2.78 -92.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724240357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.672 kcal (2) G-P(sol) polarization free energy of solvation -95.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds