Wall clock time and date at job start Wed Apr 1 2020 03:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46123 * 2 1 4 4 N 1.46491 * 109.47407 * 60.02247 * 3 2 1 5 5 C 1.34779 * 120.00377 * 179.97438 * 4 3 2 6 6 O 1.21540 * 119.99745 * 0.02562 * 5 4 3 7 7 C 1.47877 * 119.99955 * 179.97438 * 5 4 3 8 8 C 1.39447 * 121.11779 * 359.97438 * 7 5 4 9 9 C 1.38617 * 119.38107 * 180.02562 * 8 7 5 10 10 N 1.31587 * 121.62867 * 359.97438 * 9 8 7 11 11 C 1.32209 * 121.87062 * 0.03299 * 10 9 8 12 12 N 1.37207 * 134.67017 * 179.65257 * 11 10 9 13 13 H 0.97000 * 125.87397 * 0.26025 * 12 11 10 14 14 N 1.28784 * 108.25853 * 179.97438 * 12 11 10 15 15 N 1.28690 * 111.75960 * 0.38344 * 14 12 11 16 16 C 1.34392 * 109.15105 * 359.75753 * 15 14 12 17 17 C 1.53035 * 109.45001 * 119.96646 * 2 1 3 18 18 C 1.53183 * 109.31665 * 58.64530 * 17 2 1 19 19 N 1.46930 * 108.77251 * 54.63969 * 18 17 2 20 20 C 1.36938 * 120.63356 * 126.41626 * 19 18 17 21 21 H 1.07996 * 120.00029 * 207.66368 * 20 19 18 22 22 C 1.38817 * 119.99812 * 27.65878 * 20 19 18 23 23 N 1.31619 * 119.99804 * 17.37425 * 22 20 19 24 24 Si 1.86798 * 119.99927 * 197.36932 * 22 20 19 25 25 H 1.48499 * 109.47275 * 60.00024 * 24 22 20 26 26 H 1.48499 * 109.47064 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47161 * 300.00314 * 24 22 20 28 28 C 1.46934 * 118.73821 * 306.39094 * 19 18 17 29 29 C 1.53043 * 109.46140 * 240.02474 * 2 1 3 30 30 H 1.09009 * 109.46824 * 60.00404 * 1 2 3 31 31 H 1.08997 * 109.47019 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47049 * 300.00243 * 1 2 3 33 33 H 1.09008 * 109.47201 * 300.02260 * 3 2 1 34 34 H 1.09003 * 109.47423 * 180.02562 * 3 2 1 35 35 H 0.97004 * 119.99642 * 0.02562 * 4 3 2 36 36 H 1.08003 * 120.30969 * 359.97438 * 8 7 5 37 37 H 1.07997 * 119.18646 * 179.97438 * 9 8 7 38 38 H 1.08999 * 109.50151 * 178.60185 * 17 2 1 39 39 H 1.09007 * 109.49653 * 298.69340 * 17 2 1 40 40 H 1.08994 * 109.59090 * 294.85486 * 18 17 2 41 41 H 1.09003 * 109.59429 * 174.42218 * 18 17 2 42 42 H 0.97001 * 119.99450 * 180.02562 * 23 22 20 43 43 H 1.08999 * 109.58558 * 293.82123 * 28 19 18 44 44 H 1.08995 * 109.70105 * 173.46457 * 28 19 18 45 45 H 1.09000 * 109.49976 * 61.31493 * 29 2 1 46 46 H 1.09007 * 109.49558 * 181.40561 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 7 1.5517 2.1330 1.1963 5 6 1.8776 3.4232 1.4100 6 8 2.5760 4.0141 0.6097 7 6 1.3845 4.1202 2.6174 8 6 0.5807 3.4652 3.5498 9 6 0.1381 4.1534 4.6687 10 7 0.4579 5.4130 4.8754 11 6 1.2162 6.0886 4.0290 12 7 1.6960 7.3731 3.9773 13 1 1.5354 8.0667 4.6361 14 7 2.4011 7.4977 2.9069 15 7 2.4316 6.4061 2.2260 16 6 1.7101 5.4685 2.8634 17 6 2.0395 -0.7208 1.2501 18 6 1.4990 -2.1540 1.2644 19 7 1.8620 -2.8089 0.0002 20 6 2.5254 -4.0069 0.0004 21 1 3.1671 -4.2689 -0.8278 22 6 2.3730 -4.8845 1.0651 23 7 1.3596 -4.7446 1.8933 24 14 3.6060 -6.2639 1.3223 25 1 4.9594 -5.6869 1.5238 26 1 3.2214 -7.0549 2.5187 27 1 3.6172 -7.1468 0.1283 28 6 1.4993 -2.1542 -1.2642 29 6 2.0398 -0.7210 -1.2500 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6759 1.9565 -0.8898 34 1 3.1297 1.4428 -0.0005 35 1 0.9947 1.6612 1.8352 36 1 0.3048 2.4317 3.4011 37 1 -0.4847 3.6433 5.3886 38 1 3.1292 -0.7430 1.2385 39 1 1.6955 -0.1933 2.1399 40 1 0.4141 -2.1344 1.3673 41 1 1.9374 -2.7017 2.0986 42 1 1.2534 -5.3576 2.6375 43 1 0.4144 -2.1346 -1.3674 44 1 1.9361 -2.7012 -2.0997 45 1 1.6961 -0.1936 -2.1398 46 1 3.1296 -0.7432 -1.2380 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724292257.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:46 Heat of formation + Delta-G solvation = 116.383735 kcal Electronic energy + Delta-G solvation = -29988.075792 eV Core-core repulsion = 25915.765587 eV Total energy + Delta-G solvation = -4072.310205 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.78872 -40.34057 -39.22274 -38.36470 -35.17693 -34.56368 -33.40150 -32.24491 -31.22004 -30.83698 -29.97057 -27.27587 -27.03271 -25.69427 -24.29189 -24.15741 -23.21690 -22.37404 -21.26299 -20.70763 -19.27576 -18.91990 -18.05145 -17.80505 -16.99716 -16.51736 -16.08482 -15.75790 -15.33200 -15.14988 -14.85050 -14.25035 -14.04416 -14.01647 -13.70911 -13.50577 -13.42723 -13.29210 -12.84917 -12.70433 -12.63027 -12.15995 -12.04538 -11.80896 -11.51553 -11.34301 -11.21465 -10.79830 -10.72817 -10.60483 -10.50408 -10.23963 -10.23458 -9.87169 -9.83111 -9.73399 -9.55656 -9.50821 -9.45616 -9.04437 -8.46716 -6.68209 -5.81745 -3.22716 -0.36193 0.42983 1.73266 1.81603 2.56299 2.83946 3.30351 3.36860 3.37064 3.42563 3.44487 3.81199 4.01340 4.12491 4.33769 4.48029 4.71112 4.94648 5.04552 5.07944 5.12167 5.17966 5.28809 5.38055 5.48672 5.71326 5.72801 5.80617 5.90717 6.03074 6.05764 6.10268 6.17026 6.26869 6.34033 6.43744 6.49401 6.56235 6.65948 6.74445 6.83485 6.97066 7.03326 7.31679 7.36768 7.62658 7.77663 7.77880 8.04351 8.42864 9.19589 9.83093 10.39346 11.26741 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.019285 B = 0.002350 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.576291 B =11914.186411 C =12541.554689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.064 4.064 3 C 0.130 3.870 4 N -0.711 5.711 5 C 0.547 3.453 6 O -0.504 6.504 7 C -0.006 4.006 8 C -0.141 4.141 9 C 0.164 3.836 10 N -0.460 5.460 11 C 0.214 3.786 12 N -0.406 5.406 13 H 0.458 0.542 14 N 0.001 4.999 15 N -0.208 5.208 16 C 0.002 3.998 17 C -0.130 4.130 18 C 0.171 3.829 19 N -0.591 5.591 20 C -0.251 4.251 21 H 0.064 0.936 22 C 0.002 3.998 23 N -0.904 5.904 24 Si 0.901 3.099 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.283 1.283 28 C 0.146 3.854 29 C -0.120 4.120 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.401 0.599 36 H 0.160 0.840 37 H 0.185 0.815 38 H 0.057 0.943 39 H 0.044 0.956 40 H 0.021 0.979 41 H 0.086 0.914 42 H 0.254 0.746 43 H 0.021 0.979 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.192 19.480 6.286 21.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.065 4.065 3 C 0.007 3.993 4 N -0.365 5.365 5 C 0.331 3.669 6 O -0.378 6.378 7 C -0.022 4.022 8 C -0.164 4.164 9 C -0.008 4.008 10 N -0.174 5.174 11 C -0.030 4.030 12 N -0.136 5.136 13 H 0.306 0.694 14 N 0.018 4.982 15 N -0.084 5.084 16 C -0.127 4.127 17 C -0.170 4.170 18 C 0.045 3.955 19 N -0.314 5.314 20 C -0.381 4.381 21 H 0.082 0.918 22 C -0.196 4.196 23 N -0.548 5.548 24 Si 0.731 3.269 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.209 1.209 28 C 0.019 3.981 29 C -0.160 4.160 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.238 0.762 36 H 0.178 0.822 37 H 0.202 0.798 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.039 0.961 41 H 0.104 0.896 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.087 21.193 5.602 22.298 hybrid contribution -0.115 -1.527 1.003 1.831 sum -4.201 19.666 6.606 21.167 Atomic orbital electron populations 1.21950 0.94648 1.03111 1.00255 1.20712 0.95803 0.91875 0.98100 1.21633 0.99315 0.92250 0.86132 1.45995 1.53169 1.11008 1.26292 1.17868 0.81579 0.82212 0.85235 1.90875 1.35998 1.65715 1.45239 1.19746 0.96270 0.90342 0.95844 1.22484 0.97345 1.02181 0.94430 1.22889 0.95033 0.87428 0.95451 1.66337 1.12323 1.09309 1.29384 1.19878 1.00300 0.87846 0.94942 1.44710 1.38216 1.09844 1.20864 0.69420 1.78273 1.07944 1.19420 0.92546 1.75593 1.16624 0.94971 1.21249 1.20125 1.01807 0.95680 0.95066 1.22265 1.00804 0.99600 0.94285 1.20796 0.96490 0.87761 0.90424 1.44024 1.66812 1.21081 0.99465 1.19149 1.19279 0.93494 1.06138 0.91794 1.25003 0.97119 0.97526 0.99983 1.70015 1.27899 1.38937 1.17984 0.86393 0.81334 0.81857 0.77334 1.21081 1.21676 1.20917 1.20910 0.96414 0.90603 0.90134 1.21999 1.00849 0.98158 0.94978 0.93291 0.90608 0.93784 0.91480 0.91263 0.76238 0.82221 0.79813 0.92429 0.93774 0.96071 0.89610 0.93651 0.96136 0.92896 0.92850 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 7.54 37.15 0.28 -1.61 16 2 C -0.06 -0.92 0.53 -154.47 -0.08 -1.00 16 3 C 0.13 1.72 4.56 -4.05 -0.02 1.70 16 4 N -0.71 -8.30 4.91 -61.24 -0.30 -8.60 16 5 C 0.55 7.43 7.79 -12.31 -0.10 7.33 16 6 O -0.50 -8.88 16.27 5.33 0.09 -8.80 16 7 C -0.01 -0.06 5.92 -104.51 -0.62 -0.68 16 8 C -0.14 -1.01 9.61 -38.99 -0.37 -1.38 16 9 C 0.16 1.04 11.14 -17.52 -0.20 0.84 16 10 N -0.46 -4.02 10.35 -12.39 -0.13 -4.15 16 11 C 0.21 2.20 8.56 -156.21 -1.34 0.87 16 12 N -0.41 -3.45 7.06 31.11 0.22 -3.23 16 13 H 0.46 1.89 8.96 -190.25 -1.71 0.19 16 14 N 0.00 0.01 13.29 60.35 0.80 0.82 16 15 N -0.21 -3.03 11.92 32.23 0.38 -2.65 16 16 C 0.00 0.03 6.97 -84.72 -0.59 -0.56 16 17 C -0.13 -2.15 4.75 -26.62 -0.13 -2.28 16 18 C 0.17 3.68 4.84 -3.71 -0.02 3.66 16 19 N -0.59 -13.83 3.00 -172.32 -0.52 -14.35 16 20 C -0.25 -6.63 9.59 -15.06 -0.14 -6.77 16 21 H 0.06 1.67 7.89 -52.49 -0.41 1.26 16 22 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 23 N -0.90 -25.11 11.19 55.49 0.62 -24.49 16 24 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 C 0.15 2.83 6.04 -3.71 -0.02 2.81 16 29 C -0.12 -1.90 4.90 -26.61 -0.13 -2.03 16 30 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.08 1.20 4.98 -51.93 -0.26 0.94 16 32 H 0.04 0.49 6.86 -51.93 -0.36 0.13 16 33 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.40 3.75 4.30 -40.82 -0.18 3.57 16 36 H 0.16 0.68 6.53 -52.48 -0.34 0.34 16 37 H 0.19 0.42 8.06 -52.49 -0.42 0.00 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.04 0.61 6.82 -51.93 -0.35 0.26 16 40 H 0.02 0.47 6.69 -51.93 -0.35 0.12 16 41 H 0.09 2.13 6.04 -51.93 -0.31 1.82 16 42 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 43 H 0.02 0.40 6.69 -51.93 -0.35 0.05 16 44 H 0.05 1.03 7.94 -51.93 -0.41 0.62 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 365.47 15.07 5.51 5.51 Total: -1.00 -34.24 365.47 -9.03 -43.28 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.12 Total: -0.34 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -3.56 Total: 0.86 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: 1.08 Total: -56.65 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.24 -9.03 -43.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724292257.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.660 kcal (2) G-P(sol) polarization free energy of solvation -34.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds