Wall clock time and date at job start Wed Apr 1 2020 03:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46123 * 2 1 4 4 N 1.46491 * 109.47407 * 60.02247 * 3 2 1 5 5 C 1.34779 * 120.00377 * 179.97438 * 4 3 2 6 6 O 1.21540 * 119.99745 * 0.02562 * 5 4 3 7 7 C 1.47877 * 119.99955 * 179.97438 * 5 4 3 8 8 C 1.39447 * 121.11779 * 359.97438 * 7 5 4 9 9 C 1.38617 * 119.38107 * 180.02562 * 8 7 5 10 10 N 1.31587 * 121.62867 * 359.97438 * 9 8 7 11 11 C 1.32209 * 121.87062 * 0.03299 * 10 9 8 12 12 N 1.37207 * 134.67017 * 179.65257 * 11 10 9 13 13 H 0.97000 * 125.87397 * 0.26025 * 12 11 10 14 14 N 1.28784 * 108.25853 * 179.97438 * 12 11 10 15 15 N 1.28690 * 111.75960 * 0.38344 * 14 12 11 16 16 C 1.34392 * 109.15105 * 359.75753 * 15 14 12 17 17 C 1.53035 * 109.45001 * 119.96646 * 2 1 3 18 18 C 1.53183 * 109.31665 * 58.64530 * 17 2 1 19 19 N 1.46930 * 108.77251 * 54.63969 * 18 17 2 20 20 C 1.36938 * 120.63356 * 126.41626 * 19 18 17 21 21 H 1.07996 * 120.00029 * 207.66368 * 20 19 18 22 22 C 1.38817 * 119.99812 * 27.65878 * 20 19 18 23 23 N 1.31619 * 119.99804 * 17.37425 * 22 20 19 24 24 Si 1.86798 * 119.99927 * 197.36932 * 22 20 19 25 25 H 1.48499 * 109.47275 * 60.00024 * 24 22 20 26 26 H 1.48499 * 109.47064 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47161 * 300.00314 * 24 22 20 28 28 C 1.46934 * 118.73821 * 306.39094 * 19 18 17 29 29 C 1.53043 * 109.46140 * 240.02474 * 2 1 3 30 30 H 1.09009 * 109.46824 * 60.00404 * 1 2 3 31 31 H 1.08997 * 109.47019 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47049 * 300.00243 * 1 2 3 33 33 H 1.09008 * 109.47201 * 300.02260 * 3 2 1 34 34 H 1.09003 * 109.47423 * 180.02562 * 3 2 1 35 35 H 0.97004 * 119.99642 * 0.02562 * 4 3 2 36 36 H 1.08003 * 120.30969 * 359.97438 * 8 7 5 37 37 H 1.07997 * 119.18646 * 179.97438 * 9 8 7 38 38 H 1.08999 * 109.50151 * 178.60185 * 17 2 1 39 39 H 1.09007 * 109.49653 * 298.69340 * 17 2 1 40 40 H 1.08994 * 109.59090 * 294.85486 * 18 17 2 41 41 H 1.09003 * 109.59429 * 174.42218 * 18 17 2 42 42 H 0.97001 * 119.99450 * 180.02562 * 23 22 20 43 43 H 1.08999 * 109.58558 * 293.82123 * 28 19 18 44 44 H 1.08995 * 109.70105 * 173.46457 * 28 19 18 45 45 H 1.09000 * 109.49976 * 61.31493 * 29 2 1 46 46 H 1.09007 * 109.49558 * 181.40561 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 7 1.5517 2.1330 1.1963 5 6 1.8776 3.4232 1.4100 6 8 2.5760 4.0141 0.6097 7 6 1.3845 4.1202 2.6174 8 6 0.5807 3.4652 3.5498 9 6 0.1381 4.1534 4.6687 10 7 0.4579 5.4130 4.8754 11 6 1.2162 6.0886 4.0290 12 7 1.6960 7.3731 3.9773 13 1 1.5354 8.0667 4.6361 14 7 2.4011 7.4977 2.9069 15 7 2.4316 6.4061 2.2260 16 6 1.7101 5.4685 2.8634 17 6 2.0395 -0.7208 1.2501 18 6 1.4990 -2.1540 1.2644 19 7 1.8620 -2.8089 0.0002 20 6 2.5254 -4.0069 0.0004 21 1 3.1671 -4.2689 -0.8278 22 6 2.3730 -4.8845 1.0651 23 7 1.3596 -4.7446 1.8933 24 14 3.6060 -6.2639 1.3223 25 1 4.9594 -5.6869 1.5238 26 1 3.2214 -7.0549 2.5187 27 1 3.6172 -7.1468 0.1283 28 6 1.4993 -2.1542 -1.2642 29 6 2.0398 -0.7210 -1.2500 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6759 1.9565 -0.8898 34 1 3.1297 1.4428 -0.0005 35 1 0.9947 1.6612 1.8352 36 1 0.3048 2.4317 3.4011 37 1 -0.4847 3.6433 5.3886 38 1 3.1292 -0.7430 1.2385 39 1 1.6955 -0.1933 2.1399 40 1 0.4141 -2.1344 1.3673 41 1 1.9374 -2.7017 2.0986 42 1 1.2534 -5.3576 2.6375 43 1 0.4144 -2.1346 -1.3674 44 1 1.9361 -2.7012 -2.0997 45 1 1.6961 -0.1936 -2.1398 46 1 3.1296 -0.7432 -1.2380 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724292257.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:45 Heat of formation + Delta-G solvation = 91.545516 kcal Electronic energy + Delta-G solvation = -29989.152858 eV Core-core repulsion = 25915.765587 eV Total energy + Delta-G solvation = -4073.387271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.54477 -41.33013 -40.18861 -39.49182 -36.61866 -35.35698 -34.78402 -33.25821 -32.39521 -31.89729 -31.52150 -28.73693 -28.08568 -26.66682 -25.65388 -24.98528 -24.22686 -23.79537 -22.50816 -21.92654 -20.16814 -19.70367 -19.49814 -18.63525 -18.13535 -17.76787 -17.05088 -16.79867 -16.56678 -16.40456 -15.82881 -15.63282 -15.43332 -15.08674 -14.99836 -14.94772 -14.41480 -14.31489 -14.11745 -13.83741 -13.51081 -13.44769 -13.13442 -12.91715 -12.80946 -12.67749 -12.61498 -12.51417 -12.33823 -12.18072 -11.86768 -11.74573 -11.49859 -11.41415 -11.06459 -10.99579 -10.64879 -10.44499 -10.42465 -10.30571 -10.04471 -8.57769 -7.82604 -5.24940 -1.09224 -0.21307 0.97026 1.11164 1.48608 1.50500 1.56732 1.72926 1.90822 2.53400 2.54721 2.68628 3.13613 3.31015 3.31604 3.39738 3.71703 3.77589 3.84374 3.91883 3.99364 4.13325 4.32714 4.34933 4.46925 4.57209 4.67386 4.70337 4.77103 4.82719 4.90357 4.92098 5.02199 5.13475 5.17846 5.19543 5.29512 5.37286 5.40395 5.46626 5.57336 5.61448 5.64275 5.72650 5.93308 6.40734 6.43066 6.45873 6.98978 7.09505 7.22658 7.95641 8.44848 9.22682 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.019285 B = 0.002350 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.576291 B =11914.186411 C =12541.554689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.053 4.053 3 C 0.141 3.859 4 N -0.698 5.698 5 C 0.549 3.451 6 O -0.555 6.555 7 C -0.038 4.038 8 C -0.110 4.110 9 C 0.177 3.823 10 N -0.462 5.462 11 C 0.207 3.793 12 N -0.382 5.382 13 H 0.474 0.526 14 N -0.011 5.011 15 N -0.261 5.261 16 C -0.025 4.025 17 C -0.118 4.118 18 C 0.178 3.822 19 N -0.610 5.610 20 C -0.261 4.261 21 H 0.059 0.941 22 C -0.046 4.046 23 N -0.929 5.929 24 Si 0.958 3.042 25 H -0.283 1.283 26 H -0.293 1.293 27 H -0.279 1.279 28 C 0.143 3.857 29 C -0.113 4.113 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.414 0.586 36 H 0.196 0.804 37 H 0.235 0.765 38 H 0.040 0.960 39 H 0.077 0.923 40 H 0.013 0.987 41 H 0.048 0.952 42 H 0.249 0.751 43 H 0.025 0.975 44 H 0.044 0.956 45 H 0.080 0.920 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.763 20.073 7.793 22.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.054 4.054 3 C 0.017 3.983 4 N -0.351 5.351 5 C 0.335 3.665 6 O -0.432 6.432 7 C -0.054 4.054 8 C -0.133 4.133 9 C 0.004 3.996 10 N -0.176 5.176 11 C -0.036 4.036 12 N -0.116 5.116 13 H 0.326 0.674 14 N 0.006 4.994 15 N -0.136 5.136 16 C -0.155 4.155 17 C -0.157 4.157 18 C 0.053 3.947 19 N -0.334 5.334 20 C -0.392 4.392 21 H 0.076 0.924 22 C -0.242 4.242 23 N -0.575 5.575 24 Si 0.787 3.213 25 H -0.209 1.209 26 H -0.219 1.219 27 H -0.205 1.205 28 C 0.018 3.982 29 C -0.153 4.153 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.254 0.746 36 H 0.213 0.787 37 H 0.251 0.749 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.031 0.969 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.042 0.958 44 H 0.063 0.937 45 H 0.099 0.901 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.663 21.824 7.112 23.642 hybrid contribution 0.276 -1.760 0.589 1.877 sum -5.387 20.064 7.701 22.156 Atomic orbital electron populations 1.21896 0.93156 1.01989 1.02485 1.20566 0.96797 0.91959 0.96065 1.21372 0.98482 0.91317 0.87117 1.45800 1.52868 1.10511 1.25966 1.18205 0.80614 0.82242 0.85410 1.90848 1.38370 1.66841 1.47177 1.19692 0.99010 0.90250 0.96445 1.22964 0.94179 1.03339 0.92820 1.23822 0.93807 0.86448 0.95513 1.66515 1.11950 1.10353 1.28792 1.19975 1.00792 0.88151 0.94679 1.44707 1.36625 1.10018 1.20236 0.67366 1.78163 1.08772 1.19039 0.93408 1.75514 1.18757 0.96219 1.23076 1.20471 1.02510 0.96421 0.96102 1.22079 0.99562 0.97012 0.97047 1.20633 0.95739 0.89887 0.88488 1.44296 1.66938 1.20778 1.01386 1.19419 1.19201 0.94636 1.05925 0.92354 1.25634 0.98659 0.99762 1.00158 1.70141 1.29231 1.39761 1.18360 0.85483 0.79327 0.79475 0.77003 1.20928 1.21874 1.20516 1.21030 0.96659 0.92308 0.88241 1.21891 1.00075 0.96176 0.97149 0.91763 0.93269 0.91024 0.91039 0.92705 0.74648 0.78692 0.74883 0.94151 0.90455 0.96901 0.93381 0.94137 0.95758 0.93724 0.90125 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 7.54 71.98 0.54 -2.69 16 2 C -0.05 -1.41 0.53 -52.16 -0.03 -1.44 16 3 C 0.14 3.45 4.56 86.38 0.39 3.85 16 4 N -0.70 -14.42 4.91 -465.96 -2.29 -16.70 16 5 C 0.55 14.27 7.79 86.80 0.68 14.95 16 6 O -0.55 -19.84 16.27 -3.84 -0.06 -19.90 16 7 C -0.04 -0.79 5.92 -19.79 -0.12 -0.91 16 8 C -0.11 -1.10 9.61 22.65 0.22 -0.88 16 9 C 0.18 1.36 11.14 84.82 0.94 2.30 16 10 N -0.46 -6.53 10.35 -193.10 -2.00 -8.53 16 11 C 0.21 3.96 8.56 134.17 1.15 5.10 16 12 N -0.38 -6.22 7.06 -55.48 -0.39 -6.61 16 13 H 0.47 3.39 8.96 -219.83 -1.97 1.42 16 14 N -0.01 -0.27 13.29 37.02 0.49 0.23 16 15 N -0.26 -7.84 11.92 -51.93 -0.62 -8.46 16 16 C -0.02 -0.63 6.97 40.06 0.28 -0.35 16 17 C -0.12 -3.72 4.75 30.67 0.15 -3.58 16 18 C 0.18 7.64 4.84 86.36 0.42 8.06 16 19 N -0.61 -28.82 3.00 -699.11 -2.09 -30.91 16 20 C -0.26 -14.01 9.59 84.03 0.81 -13.20 16 21 H 0.06 3.11 7.89 -2.91 -0.02 3.09 16 22 C -0.05 -2.52 4.91 84.86 0.42 -2.10 16 23 N -0.93 -52.43 11.19 21.65 0.24 -52.19 16 24 Si 0.96 44.04 29.59 68.60 2.03 46.07 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 26 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 27 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 28 C 0.14 5.50 6.04 86.36 0.52 6.03 16 29 C -0.11 -3.44 4.90 30.67 0.15 -3.29 16 30 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.05 1.45 4.98 -2.39 -0.01 1.44 16 32 H 0.07 1.27 6.86 -2.39 -0.02 1.25 16 33 H 0.07 1.75 8.14 -2.38 -0.02 1.74 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.41 5.98 4.30 -92.70 -0.40 5.58 16 36 H 0.20 0.46 6.53 -2.91 -0.02 0.44 16 37 H 0.24 -0.56 8.06 -2.91 -0.02 -0.58 16 38 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.08 1.90 6.82 -2.38 -0.02 1.88 16 40 H 0.01 0.57 6.69 -2.39 -0.02 0.56 16 41 H 0.05 2.43 6.04 -2.39 -0.01 2.41 16 42 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 43 H 0.02 0.93 6.69 -2.39 -0.02 0.91 16 44 H 0.04 1.75 7.94 -2.39 -0.02 1.73 16 45 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -79.66 365.47 0.52 -79.15 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -1.31 Total: 6.03 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 6.52 Total: 11.85 kcal Atomic # 7 Polarization: -116.53 SS G_CDS: -6.66 Total: -123.19 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.06 Total: -19.90 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -79.66 0.52 -79.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724292257.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.691 kcal (2) G-P(sol) polarization free energy of solvation -79.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds