Wall clock time and date at job start Wed Apr 1 2020 03:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40176 * 120.36232 * 2 1 4 4 N 1.31262 * 120.35458 * 179.97438 * 3 2 1 5 5 C 1.33988 * 120.88177 * 0.02562 * 4 3 2 6 6 N 1.32501 * 132.34293 * 179.97438 * 5 4 3 7 7 C 1.33471 * 109.75421 * 180.02562 * 6 5 4 8 8 C 1.48124 * 125.32498 * 179.97438 * 7 6 5 9 9 O 1.21523 * 120.00036 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99655 * 0.02597 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72358 * 10 8 7 12 12 H 1.09000 * 110.43878 * 36.36293 * 11 10 8 13 13 C 1.54273 * 110.48727 * 273.82192 * 11 10 8 14 14 C 1.53875 * 106.59983 * 217.71231 * 13 11 10 15 15 C 1.54265 * 106.59954 * 359.97438 * 14 13 11 16 16 C 1.54887 * 110.48838 * 159.05022 * 11 10 8 17 17 H 1.09008 * 110.75581 * 38.30228 * 16 11 10 18 18 C 1.52999 * 110.75703 * 274.93754 * 16 11 10 19 19 N 1.46493 * 109.47312 * 174.99785 * 18 16 11 20 20 C 1.36938 * 120.00190 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00143 * 359.97438 * 20 19 18 22 22 C 1.38813 * 120.00349 * 179.97438 * 20 19 18 23 23 N 1.31621 * 119.99853 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00147 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46361 * 90.00684 * 24 22 20 26 26 H 1.48501 * 109.47279 * 210.00207 * 24 22 20 27 27 H 1.48495 * 109.47095 * 330.00967 * 24 22 20 28 28 N 1.31989 * 109.34971 * 0.26670 * 7 6 5 29 29 N 1.36868 * 120.22479 * 359.97438 * 5 4 3 30 30 C 1.35681 * 120.36643 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.46892 * 89.99754 * 1 2 3 32 32 H 1.08998 * 109.46956 * 209.99993 * 1 2 3 33 33 H 1.08997 * 109.46764 * 329.99590 * 1 2 3 34 34 H 1.07993 * 119.82232 * 359.97438 * 3 2 1 35 35 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 36 36 H 1.08992 * 110.03117 * 337.00050 * 13 11 10 37 37 H 1.09000 * 110.03074 * 98.42976 * 13 11 10 38 38 H 1.08996 * 110.03191 * 119.29000 * 14 13 11 39 39 H 1.08999 * 110.02855 * 240.71747 * 14 13 11 40 40 H 1.09002 * 110.48541 * 142.28521 * 15 14 13 41 41 H 1.09001 * 110.48812 * 264.93204 * 15 14 13 42 42 H 1.09000 * 109.47128 * 294.99893 * 18 16 11 43 43 H 1.09003 * 109.47089 * 54.99401 * 18 16 11 44 44 H 0.96997 * 120.00470 * 359.97438 * 19 18 16 45 45 H 0.96997 * 119.99975 * 179.97438 * 23 22 20 46 46 H 1.07999 * 120.48620 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2156 1.2095 0.0000 4 7 3.5282 1.2093 0.0005 5 6 4.2157 0.0593 0.0005 6 7 5.5143 -0.2041 0.0005 7 6 5.7066 -1.5249 0.0000 8 6 7.0260 -2.1983 -0.0007 9 8 7.0887 -3.4119 -0.0017 10 7 8.1568 -1.4650 -0.0003 11 6 9.4616 -2.1310 0.0051 12 1 9.4282 -3.0386 -0.5976 13 6 9.8952 -2.4575 1.4492 14 6 11.4144 -2.2226 1.5158 15 6 11.8512 -1.7621 0.1097 16 6 10.5618 -1.1722 -0.5141 17 1 10.3891 -0.1568 -0.1573 18 6 10.6341 -1.2067 -2.0420 19 7 11.5971 -0.2059 -2.5080 20 6 11.8314 -0.0532 -3.8485 21 1 11.3066 -0.6710 -4.5623 22 6 12.7435 0.8955 -4.2901 23 7 13.3835 1.6480 -3.4203 24 14 13.0636 1.1032 -6.1187 25 1 12.1241 2.1101 -6.6744 26 1 14.4606 1.5613 -6.3278 27 1 12.8605 -0.1966 -6.8076 28 7 4.5373 -2.1371 -0.0062 29 7 3.5543 -1.1389 0.0005 30 6 2.1929 -1.1707 0.0005 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6786 2.1465 -0.0004 35 1 8.1067 -0.4963 0.0008 36 1 9.3843 -1.7980 2.1505 37 1 9.6678 -3.4980 1.6810 38 1 11.6408 -1.4491 2.2496 39 1 11.9242 -3.1491 1.7800 40 1 12.6242 -0.9969 0.1819 41 1 12.2060 -2.6100 -0.4763 42 1 10.9524 -2.1967 -2.3684 43 1 9.6508 -0.9859 -2.4574 44 1 12.0687 0.3487 -1.8670 45 1 14.0211 2.3106 -3.7288 46 1 1.6669 -2.1139 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732617948.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:18 Heat of formation + Delta-G solvation = 81.865108 kcal Electronic energy + Delta-G solvation = -28977.527774 eV Core-core repulsion = 24903.720729 eV Total energy + Delta-G solvation = -4073.807045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.20162 -41.34875 -40.08539 -39.12183 -36.35101 -35.92226 -35.00407 -34.05774 -33.31669 -32.13297 -30.25431 -29.46412 -28.01885 -26.56786 -26.24386 -24.95991 -24.02523 -23.82322 -22.02155 -21.48185 -20.83289 -19.89252 -19.30233 -19.16368 -18.28005 -18.04470 -17.68194 -16.83434 -16.65934 -16.28889 -15.90325 -15.82362 -15.18781 -15.16489 -15.07352 -14.74820 -14.58355 -14.40276 -14.35526 -13.79400 -13.64908 -13.61173 -13.21551 -13.13009 -13.06525 -12.92537 -12.81177 -12.44811 -12.16307 -12.06583 -11.94246 -11.77652 -11.64973 -11.63200 -11.59068 -11.29201 -11.14625 -10.93999 -10.88964 -10.28296 -9.93491 -9.00227 -7.95673 -5.24169 -0.81880 -0.60215 0.48823 0.49772 1.45601 1.47517 1.55604 1.56175 1.83537 2.08722 2.22077 2.54725 2.78568 3.15079 3.32155 3.36909 3.43553 3.62070 3.71649 3.86536 3.90558 4.12711 4.15970 4.39925 4.40332 4.43435 4.48153 4.53353 4.63277 4.68739 4.72006 4.79721 4.93295 4.94200 4.95787 4.99739 5.04273 5.04890 5.15903 5.23481 5.30309 5.40431 5.45887 5.46857 5.51421 6.03508 6.20881 6.26738 6.49261 6.78478 7.33378 8.07957 8.33857 9.27583 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010520 B = 0.002445 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.022651 B =11449.709511 C =13349.439426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.148 4.148 3 C 0.224 3.776 4 N -0.479 5.479 5 C 0.420 3.580 6 N -0.528 5.528 7 C 0.225 3.775 8 C 0.613 3.387 9 O -0.538 6.538 10 N -0.681 5.681 11 C 0.151 3.849 12 H 0.088 0.912 13 C -0.125 4.125 14 C -0.110 4.110 15 C -0.109 4.109 16 C -0.092 4.092 17 H 0.084 0.916 18 C 0.162 3.838 19 N -0.739 5.739 20 C -0.247 4.247 21 H 0.069 0.931 22 C -0.073 4.073 23 N -0.966 5.966 24 Si 0.972 3.028 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.272 1.272 28 N -0.295 5.295 29 N -0.324 5.324 30 C 0.135 3.865 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.243 0.757 35 H 0.417 0.583 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.019 0.981 43 H 0.009 0.991 44 H 0.377 0.623 45 H 0.252 0.748 46 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.514 -3.562 13.682 33.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.155 4.155 3 C 0.040 3.960 4 N -0.195 5.195 5 C 0.061 3.939 6 N -0.264 5.264 7 C -0.058 4.058 8 C 0.393 3.607 9 O -0.413 6.413 10 N -0.332 5.332 11 C 0.047 3.953 12 H 0.106 0.894 13 C -0.164 4.164 14 C -0.148 4.148 15 C -0.147 4.147 16 C -0.112 4.112 17 H 0.102 0.898 18 C 0.035 3.965 19 N -0.381 5.381 20 C -0.379 4.379 21 H 0.087 0.913 22 C -0.265 4.265 23 N -0.616 5.616 24 Si 0.801 3.199 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.197 1.197 28 N -0.130 5.130 29 N -0.104 5.104 30 C 0.001 3.999 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.126 0.874 34 H 0.259 0.741 35 H 0.255 0.745 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.037 0.963 43 H 0.026 0.974 44 H 0.209 0.791 45 H 0.061 0.939 46 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -29.426 -4.413 13.498 32.673 hybrid contribution 0.156 0.293 -1.023 1.076 sum -29.270 -4.119 12.474 32.083 Atomic orbital electron populations 1.20869 0.83153 1.06302 1.05130 1.21261 1.01426 0.90354 1.02425 1.24703 0.86541 1.01664 0.83118 1.68239 1.11111 1.21199 1.18921 1.22837 0.89218 0.84068 0.97816 1.70704 1.13039 1.13647 1.29014 1.23986 0.94928 0.88129 0.98803 1.16395 0.81345 0.85556 0.77373 1.90807 1.86522 1.13351 1.50613 1.45800 1.04470 1.11276 1.71616 1.22014 0.79437 0.95706 0.98176 0.89411 1.22478 0.96857 1.02463 0.94586 1.22057 0.94115 1.02325 0.96318 1.22251 0.95839 1.00337 0.96238 1.22425 0.95237 0.99265 0.94248 0.89785 1.20738 0.91481 0.91661 0.92581 1.42453 1.48796 1.42774 1.04120 1.19583 1.18266 1.14961 0.85118 0.91290 1.25538 0.99938 0.99153 1.01904 1.69804 1.31435 1.26248 1.34134 0.85159 0.76696 0.77854 0.80161 1.21448 1.21763 1.19730 1.78744 0.95536 1.08563 1.30193 1.49036 1.08328 1.07580 1.45450 1.22959 0.77367 1.04349 0.95195 0.88405 0.89102 0.87416 0.74140 0.74531 0.90711 0.90730 0.90439 0.90082 0.91809 0.91747 0.96297 0.97354 0.79069 0.93901 0.76878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.51 10.03 71.24 0.71 1.23 16 2 C -0.15 -0.59 5.87 -19.99 -0.12 -0.71 16 3 C 0.22 1.64 10.96 85.25 0.93 2.58 16 4 N -0.48 -9.88 10.48 -197.54 -2.07 -11.95 16 5 C 0.42 11.52 8.99 261.57 2.35 13.87 16 6 N -0.53 -17.39 10.89 -192.62 -2.10 -19.49 16 7 C 0.23 7.54 7.92 137.39 1.09 8.63 16 8 C 0.61 20.96 7.83 86.87 0.68 21.64 16 9 O -0.54 -20.70 16.78 -3.79 -0.06 -20.76 16 10 N -0.68 -20.99 5.11 -440.04 -2.25 -23.24 16 11 C 0.15 4.53 2.60 46.07 0.12 4.65 16 12 H 0.09 2.87 7.58 -2.39 -0.02 2.85 16 13 C -0.13 -3.11 6.53 31.32 0.20 -2.91 16 14 C -0.11 -2.57 6.80 31.32 0.21 -2.36 16 15 C -0.11 -3.29 6.20 31.68 0.20 -3.10 16 16 C -0.09 -3.09 2.50 -9.49 -0.02 -3.11 16 17 H 0.08 2.84 8.02 -2.38 -0.02 2.82 16 18 C 0.16 6.95 5.70 86.38 0.49 7.44 16 19 N -0.74 -39.00 5.52 -343.46 -1.90 -40.90 16 20 C -0.25 -14.45 9.99 84.03 0.84 -13.61 16 21 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 22 C -0.07 -4.31 5.50 84.86 0.47 -3.85 16 23 N -0.97 -60.13 13.06 21.65 0.28 -59.85 16 24 Si 0.97 47.64 29.55 68.60 2.03 49.66 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 27 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 28 N -0.29 -9.21 12.78 -52.60 -0.67 -9.88 16 29 N -0.32 -7.65 3.91 -197.58 -0.77 -8.42 16 30 C 0.14 1.47 10.97 83.43 0.92 2.38 16 31 H 0.10 -0.63 8.14 -2.39 -0.02 -0.65 16 32 H 0.09 -0.60 8.09 -2.39 -0.02 -0.62 16 33 H 0.11 -0.95 8.10 -2.39 -0.02 -0.97 16 34 H 0.24 -0.83 8.06 -2.91 -0.02 -0.86 16 35 H 0.42 12.50 8.20 -92.71 -0.76 11.74 16 36 H 0.07 1.77 8.04 -2.39 -0.02 1.75 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.06 2.03 7.94 -2.39 -0.02 2.01 16 42 H 0.02 0.83 7.99 -2.39 -0.02 0.81 16 43 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.38 20.74 7.67 -92.71 -0.71 20.03 16 45 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 46 H 0.21 0.81 8.06 -2.91 -0.02 0.79 16 Total: -1.00 -86.30 390.52 1.12 -85.18 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: -0.44 Total: 26.86 kcal Atomic # 6 Polarization: 23.71 SS G_CDS: 9.07 Total: 32.78 kcal Atomic # 7 Polarization: -164.25 SS G_CDS: -9.48 Total: -173.73 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.06 Total: -20.76 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.66 kcal Total: -86.30 1.12 -85.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732617948.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.047 kcal (2) G-P(sol) polarization free energy of solvation -86.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds