Wall clock time and date at job start Wed Apr 1 2020 02:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99793 * 2 1 4 4 H 1.48507 * 109.47081 * 239.99680 * 3 2 1 5 5 H 1.48493 * 109.47206 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47105 * 120.00026 * 3 2 1 7 7 C 1.38809 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00462 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00203 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00307 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47019 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46811 * 179.97438 * 11 10 9 13 13 H 1.08995 * 109.50000 * 304.93429 * 12 11 10 14 14 C 1.53037 * 109.49395 * 184.83849 * 12 11 10 15 15 C 1.53039 * 109.53578 * 178.68350 * 14 12 11 16 16 C 1.53198 * 109.31343 * 61.36637 * 15 14 12 17 17 N 1.46924 * 108.77282 * 305.36285 * 16 15 14 18 18 C 1.34779 * 120.63241 * 233.88185 * 17 16 15 19 19 O 1.21522 * 120.00052 * 172.31770 * 18 17 16 20 20 C 1.48127 * 119.99533 * 352.31643 * 18 17 16 21 21 N 1.33458 * 125.32699 * 351.97968 * 20 18 17 22 22 C 1.32508 * 109.75556 * 179.97438 * 21 20 18 23 23 N 1.33983 * 132.34426 * 180.02562 * 22 21 20 24 24 C 1.31254 * 120.88135 * 179.97438 * 23 22 21 25 25 C 1.40174 * 120.35462 * 359.97438 * 24 23 22 26 26 C 1.35673 * 119.27265 * 0.02562 * 25 24 23 27 27 N 1.36171 * 119.03234 * 359.97438 * 26 25 24 28 28 N 1.31988 * 125.31936 * 171.66693 * 20 18 17 29 29 C 1.46929 * 118.73842 * 53.61224 * 17 16 15 30 30 H 0.97000 * 120.00307 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99917 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47360 * 59.99653 * 10 9 7 33 33 H 1.09009 * 109.46623 * 300.00069 * 10 9 7 34 34 H 1.08995 * 109.47286 * 60.00262 * 11 10 9 35 35 H 1.08995 * 109.47239 * 299.99590 * 11 10 9 36 36 H 1.09006 * 109.46096 * 298.70389 * 14 12 11 37 37 H 1.08999 * 109.46253 * 58.66685 * 14 12 11 38 38 H 1.09003 * 109.49967 * 181.31306 * 15 14 12 39 39 H 1.08997 * 109.50276 * 301.37979 * 15 14 12 40 40 H 1.09000 * 109.58714 * 185.57749 * 16 15 14 41 41 H 1.08996 * 109.58866 * 65.15142 * 16 15 14 42 42 H 1.08005 * 119.82428 * 180.02562 * 24 23 22 43 43 H 1.08000 * 120.35877 * 179.97438 * 25 24 23 44 44 H 1.08000 * 120.48641 * 179.97438 * 26 25 24 45 45 H 1.08997 * 109.58715 * 66.17612 * 29 17 16 46 46 H 1.08996 * 109.58473 * 186.60360 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 6 1.8290 -6.1447 -0.0018 13 1 2.5205 -6.1652 -0.8441 14 6 0.8395 -7.3058 -0.1242 15 6 1.6060 -8.6300 -0.1579 16 6 2.3876 -8.7965 1.1491 17 7 3.2358 -7.6132 1.3468 18 6 4.5608 -7.7452 1.5553 19 8 5.2733 -6.7610 1.5782 20 6 5.1484 -9.0899 1.7566 21 7 4.4553 -10.2209 1.9032 22 6 5.2882 -11.2392 2.0624 23 7 5.0854 -12.5512 2.2433 24 6 6.0968 -13.3768 2.3783 25 6 7.4133 -12.8975 2.3349 26 6 7.6305 -11.5707 2.1522 27 7 6.5613 -10.7387 2.0152 28 7 6.4396 -9.3577 1.8132 29 6 2.6131 -6.2830 1.3070 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 0.0002 32 1 2.6849 -3.7145 0.8894 33 1 2.6848 -3.7144 -0.8906 34 1 0.4376 -4.7618 -0.8914 35 1 0.4370 -4.7622 0.8886 36 1 0.1640 -7.2989 0.7313 37 1 0.2630 -7.1964 -1.0427 38 1 0.9022 -9.4550 -0.2685 39 1 2.2991 -8.6279 -0.9991 40 1 3.0120 -9.6880 1.0904 41 1 1.6909 -8.8900 1.9821 42 1 5.9137 -14.4314 2.5229 43 1 8.2455 -13.5767 2.4464 44 1 8.6367 -11.1801 2.1160 45 1 1.9348 -6.1716 2.1529 46 1 3.3863 -5.5161 1.3524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753558909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:44 Heat of formation + Delta-G solvation = 128.889238 kcal Electronic energy + Delta-G solvation = -29233.442693 eV Core-core repulsion = 25161.674767 eV Total energy + Delta-G solvation = -4071.767926 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.52527 -40.47052 -39.16034 -37.76913 -35.45658 -35.09117 -33.50731 -32.11927 -32.01785 -31.32103 -30.54625 -27.72058 -26.69314 -25.41447 -24.67138 -23.98880 -23.29612 -22.46547 -20.87199 -20.35216 -19.58754 -19.06676 -18.50973 -17.50300 -17.27415 -16.92326 -16.53703 -16.08336 -15.43751 -15.19335 -14.86258 -14.67111 -14.31621 -13.97155 -13.75563 -13.64428 -13.53093 -13.37733 -13.24478 -13.02847 -12.89130 -12.74307 -12.58610 -12.05445 -11.39243 -11.16954 -11.06597 -10.96721 -10.78279 -10.71306 -10.62224 -10.56596 -10.37604 -10.36274 -10.19284 -10.00076 -9.82222 -9.56621 -9.42894 -8.76528 -8.72262 -6.81686 -5.67372 -2.95295 -0.30018 -0.01104 1.13463 1.32767 2.36515 2.60677 2.73418 3.02552 3.46327 3.51632 3.54962 3.56896 3.61249 3.86801 4.14271 4.40908 4.60022 4.64722 4.78194 4.90874 4.95951 5.03184 5.05890 5.22406 5.31305 5.33436 5.48240 5.52313 5.63642 5.67867 5.73185 5.81759 5.83494 5.96118 6.03422 6.07663 6.15406 6.29444 6.35799 6.41378 6.51659 6.57406 6.74257 6.97670 7.00362 7.04747 7.24289 7.79833 7.84806 8.52153 9.62855 10.21966 10.56781 11.55676 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.022011 B = 0.002002 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.800404 B =13984.383563 C =15090.167799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.149 3.851 11 C -0.118 4.118 12 C -0.095 4.095 13 H 0.075 0.925 14 C -0.117 4.117 15 C -0.133 4.133 16 C 0.077 3.923 17 N -0.582 5.582 18 C 0.604 3.396 19 O -0.502 6.502 20 C 0.250 3.750 21 N -0.495 5.495 22 C 0.439 3.561 23 N -0.450 5.450 24 C 0.211 3.789 25 C -0.219 4.219 26 C 0.174 3.826 27 N -0.328 5.328 28 N -0.265 5.265 29 C 0.114 3.886 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.021 0.979 33 H 0.017 0.983 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.134 0.866 41 H 0.071 0.929 42 H 0.194 0.806 43 H 0.178 0.822 44 H 0.187 0.813 45 H 0.077 0.923 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.663 -36.172 4.731 38.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.022 3.978 11 C -0.156 4.156 12 C -0.115 4.115 13 H 0.093 0.907 14 C -0.154 4.154 15 C -0.171 4.171 16 C -0.045 4.045 17 N -0.315 5.315 18 C 0.385 3.615 19 O -0.374 6.374 20 C -0.033 4.033 21 N -0.230 5.230 22 C 0.080 3.920 23 N -0.164 5.164 24 C 0.024 3.976 25 C -0.244 4.244 26 C 0.038 3.962 27 N -0.109 5.109 28 N -0.098 5.098 29 C -0.007 4.007 30 H 0.064 0.936 31 H 0.216 0.784 32 H 0.039 0.961 33 H 0.035 0.965 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.151 0.849 41 H 0.089 0.911 42 H 0.211 0.789 43 H 0.196 0.804 44 H 0.204 0.796 45 H 0.095 0.905 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.327 -34.877 4.650 37.283 hybrid contribution 1.064 0.823 0.028 1.345 sum 13.391 -34.054 4.678 36.890 Atomic orbital electron populations 1.69651 1.05071 1.25616 1.58140 1.24734 0.95543 0.97656 1.03288 0.86259 0.78488 0.83548 0.77872 1.21314 1.21736 1.21284 1.19225 0.91062 0.84255 1.42209 0.91240 1.42364 1.05839 1.00103 1.89477 1.20730 0.93586 0.85578 0.97905 1.21731 0.98631 0.92800 1.02467 1.21466 0.97262 0.95306 0.97460 0.90665 1.21626 0.97694 0.93588 1.02516 1.21929 0.99307 0.98251 0.97623 1.22715 0.95259 0.89116 0.97433 1.47912 1.05670 1.09301 1.68581 1.16403 0.82559 0.83760 0.78766 1.90894 1.59703 1.36801 1.49967 1.24333 0.87877 0.94716 0.96389 1.70857 1.28232 0.95817 1.28092 1.23002 0.80120 0.92480 0.96440 1.68118 1.34192 0.97552 1.16579 1.23706 0.87179 1.00420 0.86286 1.22051 1.00640 0.94233 1.07508 1.22295 0.92975 0.88922 0.92038 1.49054 1.08965 1.07952 1.44889 1.79007 1.17275 0.85658 1.27900 1.22010 0.97924 0.82588 0.98171 0.93581 0.78360 0.96138 0.96464 0.91437 0.91680 0.91555 0.91442 0.90648 0.91882 0.84947 0.91096 0.78905 0.80431 0.79591 0.90513 0.87949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.28 13.06 55.49 0.72 -28.56 16 2 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 3 Si 0.91 23.40 29.55 -169.99 -5.02 18.38 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 8 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 9 N -0.73 -19.65 5.60 -59.90 -0.34 -19.99 16 10 C 0.15 3.20 6.02 -4.04 -0.02 3.18 16 11 C -0.12 -1.96 4.80 -26.73 -0.13 -2.09 16 12 C -0.10 -1.32 2.34 -90.50 -0.21 -1.53 16 13 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 14 C -0.12 -1.31 5.17 -26.69 -0.14 -1.45 16 15 C -0.13 -1.35 6.08 -26.61 -0.16 -1.52 16 16 C 0.08 0.87 6.07 -3.71 -0.02 0.85 16 17 N -0.58 -8.02 2.97 -173.77 -0.52 -8.54 16 18 C 0.60 9.49 7.70 -12.20 -0.09 9.40 16 19 O -0.50 -9.50 16.50 5.35 0.09 -9.41 16 20 C 0.25 3.55 7.62 -156.80 -1.19 2.36 16 21 N -0.49 -6.29 7.67 -12.24 -0.09 -6.39 16 22 C 0.44 4.69 8.99 -323.04 -2.90 1.79 16 23 N -0.45 -3.53 10.48 -13.79 -0.14 -3.67 16 24 C 0.21 0.52 11.27 -17.07 -0.19 0.32 16 25 C -0.22 -0.18 10.06 -39.77 -0.40 -0.58 16 26 C 0.17 0.71 11.32 -16.54 -0.19 0.52 16 27 N -0.33 -3.17 3.91 -13.80 -0.05 -3.23 16 28 N -0.27 -3.59 12.79 32.02 0.41 -3.18 16 29 C 0.11 1.65 5.33 -3.71 -0.02 1.63 16 30 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.38 10.63 7.67 -40.82 -0.31 10.31 16 32 H 0.02 0.45 6.70 -51.93 -0.35 0.10 16 33 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.13 1.56 4.16 -60.86 -0.25 1.31 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.19 -0.38 8.06 -52.48 -0.42 -0.81 16 43 H 0.18 -0.61 8.06 -52.49 -0.42 -1.04 16 44 H 0.19 0.18 8.06 -52.49 -0.42 -0.24 16 45 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.10 1.72 5.72 -51.93 -0.30 1.42 16 LS Contribution 378.08 15.07 5.70 5.70 Total: -1.00 -39.14 378.08 -11.42 -50.56 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.25 Total: 3.18 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -5.92 Total: 5.15 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -0.01 Total: -73.56 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -5.02 Total: 18.38 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -39.14 -11.42 -50.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753558909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.451 kcal (2) G-P(sol) polarization free energy of solvation -39.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds