Wall clock time and date at job start Wed Apr 1 2020 02:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00040 * 2 1 4 4 H 1.48504 * 109.46729 * 269.99396 * 3 2 1 5 5 H 1.48492 * 109.47542 * 29.99705 * 3 2 1 6 6 H 1.48503 * 109.47003 * 150.00171 * 3 2 1 7 7 C 1.38813 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00051 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99839 * 359.97438 * 7 2 1 10 10 C 1.46509 * 119.99955 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47206 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47457 * 305.00393 * 11 10 9 13 13 C 1.53005 * 109.47132 * 65.00111 * 11 10 9 14 14 C 1.52995 * 109.46968 * 179.97438 * 13 11 10 15 15 C 1.52992 * 109.47530 * 300.00386 * 14 13 11 16 16 C 1.52995 * 109.47240 * 60.00217 * 15 14 13 17 17 C 1.52992 * 109.47158 * 185.00370 * 11 10 9 18 18 H 1.08997 * 109.47292 * 60.00155 * 17 11 10 19 19 N 1.46496 * 109.47247 * 300.00104 * 17 11 10 20 20 C 1.34782 * 120.00246 * 155.00126 * 19 17 11 21 21 O 1.21517 * 119.99878 * 359.97438 * 20 19 17 22 22 C 1.48127 * 119.99771 * 180.02562 * 20 19 17 23 23 N 1.33465 * 125.32985 * 359.97363 * 22 20 19 24 24 C 1.32496 * 109.75564 * 179.97438 * 23 22 20 25 25 N 1.33995 * 132.33639 * 180.31035 * 24 23 22 26 26 C 1.31258 * 120.87566 * 180.20983 * 25 24 23 27 27 C 1.40176 * 120.35530 * 359.44740 * 26 25 24 28 28 C 1.35678 * 119.27360 * 0.27847 * 27 26 25 29 29 N 1.36167 * 119.03141 * 359.97438 * 28 27 26 30 30 N 1.31995 * 125.31820 * 179.97438 * 22 20 19 31 31 H 0.97004 * 119.99926 * 0.02562 * 1 2 3 32 32 H 0.96997 * 120.00424 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.46381 * 60.00508 * 10 9 7 34 34 H 1.08992 * 109.46904 * 300.00759 * 10 9 7 35 35 H 1.08996 * 109.46903 * 300.00286 * 13 11 10 36 36 H 1.09005 * 109.46364 * 60.00100 * 13 11 10 37 37 H 1.09005 * 109.47207 * 60.00971 * 14 13 11 38 38 H 1.09009 * 109.46844 * 180.02562 * 14 13 11 39 39 H 1.09004 * 109.47414 * 180.02562 * 15 14 13 40 40 H 1.08999 * 109.47176 * 299.99798 * 15 14 13 41 41 H 1.09001 * 109.47291 * 180.02562 * 16 15 14 42 42 H 1.08999 * 109.47379 * 59.99705 * 16 15 14 43 43 H 0.97000 * 120.00145 * 335.00285 * 19 17 11 44 44 H 1.08002 * 119.82427 * 179.72880 * 26 25 24 45 45 H 1.08002 * 120.36062 * 180.29984 * 27 26 25 46 46 H 1.08004 * 120.48187 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0579 -3.6569 0.0016 11 6 1.0637 -4.8197 0.0022 12 1 0.3798 -4.7126 0.8442 13 6 0.2684 -4.8115 -1.3049 14 6 -0.7254 -5.9747 -1.3044 15 6 0.0358 -7.2959 -1.1789 16 6 0.8309 -7.3041 0.1282 17 6 1.8244 -6.1411 0.1281 18 1 2.3909 -6.1470 1.0592 19 7 2.7436 -6.2851 -1.0036 20 6 3.8430 -7.0557 -0.8851 21 8 4.0720 -7.6307 0.1607 22 6 4.7725 -7.2008 -2.0292 23 7 4.6255 -6.6195 -3.2216 24 6 5.6330 -6.9587 -4.0124 25 7 5.9356 -6.6360 -5.2772 26 6 7.0126 -7.1143 -5.8552 27 6 7.8752 -7.9662 -5.1515 28 6 7.5816 -8.2954 -3.8685 29 7 6.4545 -7.7877 -3.2974 30 7 5.8759 -7.9253 -2.0288 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0016 33 1 2.6852 -3.7142 0.8912 34 1 2.6839 -3.7149 -0.8887 35 1 -0.2736 -3.8701 -1.3944 36 1 0.9523 -4.9186 -2.1468 37 1 -1.4094 -5.8680 -0.4624 38 1 -1.2917 -5.9691 -2.2359 39 1 -0.6722 -8.1247 -1.1791 40 1 0.7196 -7.4026 -2.0209 41 1 1.3736 -8.2452 0.2174 42 1 0.1471 -7.1974 0.9702 43 1 2.5609 -5.8258 -1.8382 44 1 7.2379 -6.8465 -6.8770 45 1 8.7640 -8.3560 -5.6255 46 1 8.2323 -8.9505 -3.3083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754352914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:28 Heat of formation + Delta-G solvation = 109.388619 kcal Electronic energy + Delta-G solvation = -29931.133448 eV Core-core repulsion = 25858.519911 eV Total energy + Delta-G solvation = -4072.613536 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.32384 -40.39931 -39.18348 -37.97964 -35.05869 -34.60736 -33.71718 -31.95777 -31.82435 -31.12222 -29.90534 -29.42135 -26.19347 -25.19400 -24.70188 -23.62249 -22.93167 -22.12658 -21.06576 -20.45350 -19.13032 -18.90592 -18.50473 -17.79176 -17.10526 -17.00708 -16.44811 -15.70242 -15.37214 -15.04174 -14.83453 -14.61287 -14.27806 -14.02640 -13.79954 -13.59627 -13.26018 -13.16378 -13.12553 -13.00319 -12.69463 -12.49337 -12.07233 -11.94621 -11.63070 -11.37157 -10.84898 -10.83730 -10.72777 -10.67266 -10.52921 -10.39040 -10.23645 -10.21305 -10.15798 -9.93817 -9.82063 -9.57835 -9.32710 -8.97716 -8.80140 -6.85555 -5.71396 -2.99115 -0.13807 0.14422 1.29035 1.49517 2.58820 2.77327 2.95517 3.20805 3.47683 3.52745 3.54436 3.67740 3.75216 4.14255 4.33191 4.59379 4.62622 4.75088 4.86993 4.93018 4.97624 5.21930 5.29197 5.38383 5.50391 5.55458 5.61836 5.65021 5.66869 5.69248 5.72816 5.80213 5.86625 6.07513 6.17363 6.20985 6.30148 6.32240 6.40695 6.51052 6.58149 6.75185 6.86304 6.89215 6.94019 7.22239 7.54055 7.76171 8.03274 8.47927 9.59250 10.17050 10.52290 11.51596 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009231 B = 0.003078 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.365264 B = 9093.212637 C =11011.788948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.157 3.843 11 C -0.101 4.101 12 H 0.089 0.911 13 C -0.113 4.113 14 C -0.120 4.120 15 C -0.118 4.118 16 C -0.129 4.129 17 C 0.154 3.846 18 H 0.093 0.907 19 N -0.684 5.684 20 C 0.609 3.391 21 O -0.511 6.511 22 C 0.245 3.755 23 N -0.494 5.494 24 C 0.442 3.558 25 N -0.446 5.446 26 C 0.208 3.792 27 C -0.219 4.219 28 C 0.172 3.828 29 N -0.329 5.329 30 N -0.269 5.269 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.018 0.982 34 H 0.020 0.980 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.415 0.585 44 H 0.194 0.806 45 H 0.177 0.823 46 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.513 -22.021 -12.088 28.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.086 0.914 9 N -0.374 5.374 10 C 0.030 3.970 11 C -0.120 4.120 12 H 0.108 0.892 13 C -0.151 4.151 14 C -0.157 4.157 15 C -0.156 4.156 16 C -0.167 4.167 17 C 0.050 3.950 18 H 0.111 0.889 19 N -0.337 5.337 20 C 0.389 3.611 21 O -0.383 6.383 22 C -0.039 4.039 23 N -0.228 5.228 24 C 0.082 3.918 25 N -0.160 5.160 26 C 0.021 3.979 27 C -0.244 4.244 28 C 0.035 3.965 29 N -0.110 5.110 30 N -0.103 5.103 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.253 0.747 44 H 0.210 0.790 45 H 0.195 0.805 46 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 11.889 -21.865 -10.883 27.164 hybrid contribution 1.003 0.658 -0.371 1.256 sum 12.892 -21.207 -11.254 27.251 Atomic orbital electron populations 1.69655 1.05040 1.25540 1.58077 1.24708 0.95512 0.97579 1.03203 0.86205 0.78662 0.83958 0.77490 1.21763 1.21813 1.20846 1.19223 0.91008 0.84221 1.42260 0.91350 1.42342 1.05804 0.99846 1.89426 1.20674 0.93026 0.85356 0.97975 1.21637 0.97830 0.93012 0.99522 0.89231 1.21560 0.97778 0.99078 0.96645 1.21578 0.98028 0.94402 1.01727 1.21514 0.98731 0.97673 0.97636 1.21916 0.97912 0.98280 0.98623 1.21145 0.89580 0.95214 0.89063 0.88858 1.45910 1.22221 1.47438 1.18168 1.16296 0.80326 0.80602 0.83905 1.90840 1.73944 1.46638 1.26911 1.24321 0.93554 0.92788 0.93228 1.70875 1.22529 1.27906 1.01453 1.22709 0.88404 0.90063 0.90658 1.68123 1.19559 1.23927 1.04392 1.23697 0.86177 0.87691 1.00310 1.22035 1.04678 1.04016 0.93690 1.22244 0.85779 0.94731 0.93715 1.49060 1.18159 1.32207 1.11568 1.78947 1.11635 1.25794 0.93895 0.93593 0.78182 0.96382 0.96217 0.90088 0.92408 0.91846 0.92178 0.92353 0.92219 0.91626 0.90545 0.74718 0.78957 0.80524 0.79717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.51 13.06 55.49 0.72 -27.78 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.95 29.55 -169.99 -5.02 17.92 16 4 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.62 5.33 -59.91 -0.32 -18.93 16 10 C 0.16 3.24 5.42 -4.04 -0.02 3.22 16 11 C -0.10 -1.62 2.02 -90.62 -0.18 -1.80 16 12 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 13 C -0.11 -1.72 4.91 -26.73 -0.13 -1.85 16 14 C -0.12 -1.50 5.92 -26.74 -0.16 -1.66 16 15 C -0.12 -1.38 5.76 -26.74 -0.15 -1.53 16 16 C -0.13 -1.59 5.60 -26.75 -0.15 -1.74 16 17 C 0.15 2.22 2.23 -67.96 -0.15 2.07 16 18 H 0.09 1.44 7.58 -51.93 -0.39 1.04 16 19 N -0.68 -10.12 3.61 -54.69 -0.20 -10.32 16 20 C 0.61 9.87 7.80 -12.20 -0.10 9.78 16 21 O -0.51 -9.32 16.73 5.35 0.09 -9.23 16 22 C 0.24 3.87 7.92 -156.78 -1.24 2.63 16 23 N -0.49 -7.72 10.89 -12.23 -0.13 -7.85 16 24 C 0.44 5.88 8.98 -323.04 -2.90 2.98 16 25 N -0.45 -4.71 10.48 -13.79 -0.14 -4.86 16 26 C 0.21 0.97 11.27 -17.07 -0.19 0.78 16 27 C -0.22 -0.56 10.06 -39.77 -0.40 -0.97 16 28 C 0.17 0.97 11.32 -16.54 -0.19 0.78 16 29 N -0.33 -3.77 3.91 -13.80 -0.05 -3.83 16 30 N -0.27 -3.99 12.78 32.02 0.41 -3.58 16 31 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.38 10.14 6.85 -40.82 -0.28 9.86 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.02 0.42 7.61 -51.93 -0.40 0.03 16 35 H 0.08 1.44 7.18 -51.93 -0.37 1.07 16 36 H 0.06 0.88 6.51 -51.93 -0.34 0.54 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.73 7.60 -51.93 -0.39 0.33 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.41 6.12 6.34 -40.82 -0.26 5.87 16 44 H 0.19 0.04 8.06 -52.49 -0.42 -0.38 16 45 H 0.18 -0.34 8.06 -52.49 -0.42 -0.76 16 46 H 0.19 0.41 8.06 -52.48 -0.42 -0.02 16 LS Contribution 379.34 15.07 5.72 5.72 Total: -1.00 -37.70 379.34 -11.35 -49.05 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.21 Total: 8.43 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -6.22 Total: 5.26 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: 0.29 Total: -77.16 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.70 -11.35 -49.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754352914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.439 kcal (2) G-P(sol) polarization free energy of solvation -37.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds