Wall clock time and date at job start Wed Apr 1 2020 02:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00040 * 2 1 4 4 H 1.48504 * 109.46729 * 269.99396 * 3 2 1 5 5 H 1.48492 * 109.47542 * 29.99705 * 3 2 1 6 6 H 1.48503 * 109.47003 * 150.00171 * 3 2 1 7 7 C 1.38813 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00051 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99839 * 359.97438 * 7 2 1 10 10 C 1.46509 * 119.99955 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47206 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47457 * 305.00393 * 11 10 9 13 13 C 1.53005 * 109.47132 * 65.00111 * 11 10 9 14 14 C 1.52995 * 109.46968 * 179.97438 * 13 11 10 15 15 C 1.52992 * 109.47530 * 300.00386 * 14 13 11 16 16 C 1.52995 * 109.47240 * 60.00217 * 15 14 13 17 17 C 1.52992 * 109.47158 * 185.00370 * 11 10 9 18 18 H 1.08997 * 109.47292 * 60.00155 * 17 11 10 19 19 N 1.46496 * 109.47247 * 300.00104 * 17 11 10 20 20 C 1.34782 * 120.00246 * 155.00126 * 19 17 11 21 21 O 1.21517 * 119.99878 * 359.97438 * 20 19 17 22 22 C 1.48127 * 119.99771 * 180.02562 * 20 19 17 23 23 N 1.33465 * 125.32985 * 359.97363 * 22 20 19 24 24 C 1.32496 * 109.75564 * 179.97438 * 23 22 20 25 25 N 1.33995 * 132.33639 * 180.31035 * 24 23 22 26 26 C 1.31258 * 120.87566 * 180.20983 * 25 24 23 27 27 C 1.40176 * 120.35530 * 359.44740 * 26 25 24 28 28 C 1.35678 * 119.27360 * 0.27847 * 27 26 25 29 29 N 1.36167 * 119.03141 * 359.97438 * 28 27 26 30 30 N 1.31995 * 125.31820 * 179.97438 * 22 20 19 31 31 H 0.97004 * 119.99926 * 0.02562 * 1 2 3 32 32 H 0.96997 * 120.00424 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.46381 * 60.00508 * 10 9 7 34 34 H 1.08992 * 109.46904 * 300.00759 * 10 9 7 35 35 H 1.08996 * 109.46903 * 300.00286 * 13 11 10 36 36 H 1.09005 * 109.46364 * 60.00100 * 13 11 10 37 37 H 1.09005 * 109.47207 * 60.00971 * 14 13 11 38 38 H 1.09009 * 109.46844 * 180.02562 * 14 13 11 39 39 H 1.09004 * 109.47414 * 180.02562 * 15 14 13 40 40 H 1.08999 * 109.47176 * 299.99798 * 15 14 13 41 41 H 1.09001 * 109.47291 * 180.02562 * 16 15 14 42 42 H 1.08999 * 109.47379 * 59.99705 * 16 15 14 43 43 H 0.97000 * 120.00145 * 335.00285 * 19 17 11 44 44 H 1.08002 * 119.82427 * 179.72880 * 26 25 24 45 45 H 1.08002 * 120.36062 * 180.29984 * 27 26 25 46 46 H 1.08004 * 120.48187 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0579 -3.6569 0.0016 11 6 1.0637 -4.8197 0.0022 12 1 0.3798 -4.7126 0.8442 13 6 0.2684 -4.8115 -1.3049 14 6 -0.7254 -5.9747 -1.3044 15 6 0.0358 -7.2959 -1.1789 16 6 0.8309 -7.3041 0.1282 17 6 1.8244 -6.1411 0.1281 18 1 2.3909 -6.1470 1.0592 19 7 2.7436 -6.2851 -1.0036 20 6 3.8430 -7.0557 -0.8851 21 8 4.0720 -7.6307 0.1607 22 6 4.7725 -7.2008 -2.0292 23 7 4.6255 -6.6195 -3.2216 24 6 5.6330 -6.9587 -4.0124 25 7 5.9356 -6.6360 -5.2772 26 6 7.0126 -7.1143 -5.8552 27 6 7.8752 -7.9662 -5.1515 28 6 7.5816 -8.2954 -3.8685 29 7 6.4545 -7.7877 -3.2974 30 7 5.8759 -7.9253 -2.0288 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0016 33 1 2.6852 -3.7142 0.8912 34 1 2.6839 -3.7149 -0.8887 35 1 -0.2736 -3.8701 -1.3944 36 1 0.9523 -4.9186 -2.1468 37 1 -1.4094 -5.8680 -0.4624 38 1 -1.2917 -5.9691 -2.2359 39 1 -0.6722 -8.1247 -1.1791 40 1 0.7196 -7.4026 -2.0209 41 1 1.3736 -8.2452 0.2174 42 1 0.1471 -7.1974 0.9702 43 1 2.5609 -5.8258 -1.8382 44 1 7.2379 -6.8465 -6.8770 45 1 8.7640 -8.3560 -5.6255 46 1 8.2323 -8.9505 -3.3083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754352914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:27 Heat of formation + Delta-G solvation = 84.477897 kcal Electronic energy + Delta-G solvation = -29932.213658 eV Core-core repulsion = 25858.519911 eV Total energy + Delta-G solvation = -4073.693746 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.13210 -41.58448 -40.00537 -39.15589 -36.48873 -35.78052 -34.87299 -33.73706 -32.60952 -31.96594 -31.26280 -30.90560 -27.31444 -26.61610 -25.48653 -24.71177 -24.41935 -23.31925 -22.23956 -21.81949 -20.19312 -19.82323 -19.40900 -19.11824 -18.51179 -17.97119 -17.09401 -16.88150 -16.70535 -16.37853 -16.13509 -15.57060 -15.44644 -15.37895 -15.14263 -14.94325 -14.66432 -14.26289 -14.11379 -13.90989 -13.89579 -13.47231 -13.27649 -13.15169 -12.99839 -12.90390 -12.73459 -12.61981 -12.13256 -11.94810 -11.86424 -11.75372 -11.61722 -11.41053 -11.24454 -11.08704 -11.05028 -10.97766 -10.87464 -10.19518 -10.07008 -8.99949 -7.96091 -5.24324 -0.73413 -0.51787 0.56525 0.57537 1.45036 1.46904 1.55354 1.61404 1.90622 2.15629 2.32339 2.54431 2.86722 3.23114 3.36689 3.46739 3.55171 3.75307 3.81506 3.94733 4.07188 4.20394 4.22597 4.35623 4.38769 4.44660 4.46430 4.47807 4.55179 4.61714 4.71082 4.78532 4.88995 4.95346 4.98468 5.04633 5.13307 5.21013 5.24774 5.27786 5.29939 5.39016 5.45813 5.49766 5.56422 6.07897 6.26160 6.27996 6.55652 6.82350 7.33296 8.07724 8.34128 9.27108 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009231 B = 0.003078 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.365264 B = 9093.212637 C =11011.788948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.971 3.029 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.248 4.248 8 H 0.066 0.934 9 N -0.738 5.738 10 C 0.159 3.841 11 C -0.086 4.086 12 H 0.092 0.908 13 C -0.107 4.107 14 C -0.112 4.112 15 C -0.112 4.112 16 C -0.122 4.122 17 C 0.158 3.842 18 H 0.082 0.918 19 N -0.678 5.678 20 C 0.611 3.389 21 O -0.540 6.540 22 C 0.225 3.775 23 N -0.533 5.533 24 C 0.424 3.576 25 N -0.489 5.489 26 C 0.218 3.782 27 C -0.175 4.175 28 C 0.141 3.859 29 N -0.329 5.329 30 N -0.296 5.296 31 H 0.252 0.748 32 H 0.378 0.622 33 H 0.008 0.992 34 H 0.013 0.987 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.414 0.586 44 H 0.243 0.757 45 H 0.238 0.762 46 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.635 -23.486 -14.314 31.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.263 4.263 3 Si 0.800 3.200 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.381 5.381 10 C 0.033 3.967 11 C -0.106 4.106 12 H 0.111 0.889 13 C -0.145 4.145 14 C -0.149 4.149 15 C -0.149 4.149 16 C -0.160 4.160 17 C 0.054 3.946 18 H 0.100 0.900 19 N -0.330 5.330 20 C 0.391 3.609 21 O -0.415 6.415 22 C -0.058 4.058 23 N -0.269 5.269 24 C 0.064 3.936 25 N -0.206 5.206 26 C 0.035 3.965 27 C -0.198 4.198 28 C 0.007 3.993 29 N -0.110 5.110 30 N -0.132 5.132 31 H 0.061 0.939 32 H 0.211 0.789 33 H 0.026 0.974 34 H 0.031 0.969 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.111 0.889 43 H 0.253 0.747 44 H 0.259 0.741 45 H 0.255 0.745 46 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 14.075 -23.367 -13.160 30.287 hybrid contribution 0.608 1.046 0.070 1.212 sum 14.683 -22.321 -13.090 29.751 Atomic orbital electron populations 1.69800 1.06371 1.26114 1.59248 1.25505 0.96439 1.00829 1.03524 0.85178 0.77643 0.79681 0.77490 1.21294 1.21725 1.19928 1.19556 0.91209 0.85636 1.41605 0.91558 1.42473 1.05646 1.00708 1.89260 1.20747 0.93730 0.85336 0.96913 1.21472 0.96899 0.91944 1.00243 0.88944 1.21473 0.98016 0.99168 0.95868 1.21521 0.97346 0.93338 1.02713 1.21474 0.98795 0.97836 0.96800 1.21877 0.97514 0.96801 0.99817 1.21106 0.89773 0.95181 0.88530 0.89970 1.45883 1.22047 1.47016 1.18080 1.16416 0.80411 0.80150 0.83897 1.90798 1.74713 1.47928 1.28043 1.24000 0.94209 0.94264 0.93375 1.70697 1.24745 1.29521 1.01907 1.22861 0.88502 0.90621 0.91599 1.68247 1.22656 1.26321 1.03357 1.24792 0.84056 0.85686 1.01927 1.22796 1.04830 1.00520 0.91678 1.23282 0.84831 0.95830 0.95367 1.49098 1.19336 1.32327 1.10270 1.78728 1.11772 1.26408 0.96278 0.93869 0.78915 0.97368 0.96887 0.92874 0.92754 0.91049 0.91054 0.90073 0.92894 0.91828 0.88920 0.74749 0.74081 0.74520 0.76523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.97 13.06 21.65 0.28 -59.68 16 2 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 3 Si 0.97 47.73 29.55 68.60 2.03 49.76 16 4 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 6 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 7 C -0.25 -14.56 9.99 84.03 0.84 -13.72 16 8 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 9 N -0.74 -38.99 5.33 -343.46 -1.83 -40.82 16 10 C 0.16 6.88 5.42 86.38 0.47 7.35 16 11 C -0.09 -2.86 2.02 -10.80 -0.02 -2.89 16 12 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 13 C -0.11 -3.36 4.91 30.59 0.15 -3.21 16 14 C -0.11 -2.69 5.92 30.59 0.18 -2.51 16 15 C -0.11 -2.47 5.76 30.59 0.18 -2.29 16 16 C -0.12 -2.94 5.60 30.58 0.17 -2.77 16 17 C 0.16 4.70 2.23 44.98 0.10 4.80 16 18 H 0.08 2.65 7.58 -2.39 -0.02 2.63 16 19 N -0.68 -21.25 3.61 -445.22 -1.61 -22.86 16 20 C 0.61 21.13 7.80 86.87 0.68 21.81 16 21 O -0.54 -20.83 16.73 -3.77 -0.06 -20.90 16 22 C 0.23 7.62 7.92 137.39 1.09 8.70 16 23 N -0.53 -17.74 10.89 -192.61 -2.10 -19.84 16 24 C 0.42 11.50 8.98 261.57 2.35 13.85 16 25 N -0.49 -9.78 10.48 -197.53 -2.07 -11.85 16 26 C 0.22 1.16 11.27 85.25 0.96 2.12 16 27 C -0.17 0.00 10.06 22.15 0.22 0.22 16 28 C 0.14 1.19 11.32 83.43 0.94 2.13 16 29 N -0.33 -7.49 3.91 -197.58 -0.77 -8.26 16 30 N -0.30 -9.21 12.78 -52.60 -0.67 -9.88 16 31 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 32 H 0.38 20.71 6.85 -92.71 -0.63 20.07 16 33 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.01 0.59 7.61 -2.39 -0.02 0.57 16 35 H 0.05 1.97 7.18 -2.39 -0.02 1.95 16 36 H 0.05 1.72 6.51 -2.38 -0.02 1.70 16 37 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.05 1.26 7.60 -2.39 -0.02 1.25 16 41 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.41 13.10 6.34 -92.71 -0.59 12.52 16 44 H 0.24 -1.31 8.06 -2.91 -0.02 -1.33 16 45 H 0.24 -2.82 8.06 -2.91 -0.02 -2.84 16 46 H 0.22 0.22 8.06 -2.91 -0.02 0.20 16 Total: -1.00 -88.54 379.34 1.78 -86.76 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: -0.19 Total: 27.70 kcal Atomic # 6 Polarization: 21.09 SS G_CDS: 8.78 Total: 29.87 kcal Atomic # 7 Polarization: -164.42 SS G_CDS: -8.77 Total: -173.19 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.06 Total: -20.90 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -88.54 1.78 -86.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754352914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.238 kcal (2) G-P(sol) polarization free energy of solvation -88.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds