Wall clock time and date at job start Wed Apr 1 2020 03:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46352 * 2 1 4 4 N 1.46506 * 109.46702 * 60.03180 * 3 2 1 5 5 C 1.34776 * 119.99760 * 180.02562 * 4 3 2 6 6 O 1.21617 * 120.00146 * 359.97438 * 5 4 3 7 7 C 1.47311 * 119.99723 * 179.97438 * 5 4 3 8 8 C 1.39008 * 120.90866 * 359.97312 * 7 5 4 9 9 C 1.39715 * 119.29564 * 180.02562 * 8 7 5 10 10 C 1.35258 * 121.07803 * 359.97438 * 9 8 7 11 11 N 1.35719 * 121.57409 * 0.02562 * 10 9 8 12 12 N 1.40202 * 134.09187 * 180.02562 * 11 10 9 13 13 N 1.29015 * 106.96480 * 179.97438 * 12 11 10 14 14 N 1.28588 * 110.78595 * 359.76737 * 13 12 11 15 15 C 1.32051 * 110.21505 * 0.38294 * 14 13 12 16 16 C 1.53036 * 109.44816 * 119.97341 * 2 1 3 17 17 C 1.53186 * 109.31474 * 58.64489 * 16 2 1 18 18 N 1.46928 * 108.77574 * 54.63745 * 17 16 2 19 19 C 1.36934 * 120.62943 * 126.41411 * 18 17 16 20 20 H 1.08008 * 119.99843 * 207.65839 * 19 18 17 21 21 C 1.38816 * 120.00610 * 27.66210 * 19 18 17 22 22 N 1.31618 * 119.99627 * 17.36467 * 21 19 18 23 23 Si 1.86797 * 120.00155 * 197.36705 * 21 19 18 24 24 H 1.48497 * 109.47366 * 59.99949 * 23 21 19 25 25 H 1.48496 * 109.46746 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46989 * 299.99474 * 23 21 19 27 27 C 1.46928 * 118.73649 * 306.38754 * 18 17 16 28 28 C 1.53048 * 109.45754 * 240.03023 * 2 1 3 29 29 H 1.09001 * 109.47188 * 59.99372 * 1 2 3 30 30 H 1.08998 * 109.47433 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46862 * 300.00031 * 1 2 3 32 32 H 1.08996 * 109.47001 * 300.02939 * 3 2 1 33 33 H 1.09000 * 109.47187 * 180.02562 * 3 2 1 34 34 H 0.96998 * 119.99674 * 359.97438 * 4 3 2 35 35 H 1.08004 * 120.34805 * 0.04861 * 8 7 5 36 36 H 1.08001 * 119.46138 * 179.97438 * 9 8 7 37 37 H 1.07998 * 119.21669 * 179.97438 * 10 9 8 38 38 H 1.09005 * 109.49557 * 178.59771 * 16 2 1 39 39 H 1.08997 * 109.49454 * 298.68829 * 16 2 1 40 40 H 1.08993 * 109.58915 * 294.84500 * 17 16 2 41 41 H 1.09002 * 109.58780 * 174.42092 * 17 16 2 42 42 H 0.96996 * 120.00139 * 180.02562 * 22 21 19 43 43 H 1.09001 * 109.58587 * 293.82222 * 27 18 17 44 44 H 1.08999 * 109.69784 * 173.47050 * 27 18 17 45 45 H 1.09000 * 109.49736 * 61.30809 * 28 2 1 46 46 H 1.08995 * 109.49576 * 181.40677 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 7 1.5519 2.1328 1.1966 5 6 1.8770 3.4233 1.4098 6 8 2.5757 4.0147 0.6090 7 6 1.3860 4.1175 2.6127 8 6 0.5859 3.4600 3.5399 9 6 0.1384 4.1511 4.6688 10 6 0.4717 5.4461 4.8722 11 7 1.2504 6.1261 3.9929 12 7 1.7467 7.4363 3.9398 13 7 2.4430 7.5315 2.8579 14 7 2.4464 6.4163 2.2178 15 6 1.7267 5.5172 2.8637 16 6 2.0395 -0.7209 1.2500 17 6 1.4989 -2.1542 1.2641 18 7 1.8619 -2.8089 -0.0001 19 6 2.5252 -4.0069 0.0000 20 1 3.1669 -4.2690 -0.8284 21 6 2.3728 -4.8847 1.0645 22 7 1.3596 -4.7449 1.8929 23 14 3.6059 -6.2642 1.3215 24 1 4.9592 -5.6873 1.5231 25 1 3.2219 -7.0546 2.5185 26 1 3.6168 -7.1470 0.1275 27 6 1.4991 -2.1541 -1.2644 28 6 2.0398 -0.7209 -1.2501 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6760 1.9565 -0.8897 33 1 3.1298 1.4427 -0.0005 34 1 0.9944 1.6613 1.8351 35 1 0.3133 2.4258 3.3895 36 1 -0.4837 3.6430 5.3907 37 1 0.1088 5.9514 5.7550 38 1 3.1293 -0.7432 1.2384 39 1 1.6956 -0.1935 2.1397 40 1 0.4141 -2.1345 1.3672 41 1 1.9374 -2.7019 2.0983 42 1 1.2533 -5.3579 2.6370 43 1 0.4142 -2.1345 -1.3676 44 1 1.9358 -2.7011 -2.1000 45 1 1.6959 -0.1935 -2.1399 46 1 3.1295 -0.7431 -1.2382 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754716696.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:37 Heat of formation + Delta-G solvation = 140.085998 kcal Electronic energy + Delta-G solvation = -29992.929247 eV Core-core repulsion = 25921.646849 eV Total energy + Delta-G solvation = -4071.282398 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -43.71510 -40.27346 -39.00509 -38.35574 -35.20875 -34.43444 -33.24451 -32.41126 -31.30745 -30.65898 -30.00350 -27.25659 -27.03143 -25.65112 -24.73573 -24.20186 -23.34695 -22.40581 -21.13317 -20.74336 -19.18812 -18.21876 -18.00105 -17.83934 -17.24546 -16.52677 -16.23068 -15.77644 -15.37113 -14.93143 -14.59220 -14.20066 -14.11545 -14.05922 -13.61423 -13.54014 -13.42584 -13.35131 -12.88550 -12.84817 -12.79101 -12.65810 -12.18217 -11.72856 -11.54601 -11.38362 -11.30573 -11.24608 -10.83065 -10.75033 -10.70251 -10.61654 -10.30015 -10.27112 -10.16688 -9.86568 -9.60058 -9.49553 -9.23203 -9.00430 -8.49504 -6.71143 -5.84582 -3.25502 -0.50731 0.04064 1.19775 1.76899 2.11737 2.77721 3.05318 3.12038 3.34923 3.40531 3.42589 3.52992 3.83468 3.99762 4.31174 4.45662 4.57784 4.81673 4.90792 4.98703 5.05653 5.08393 5.12747 5.13805 5.34364 5.36887 5.45401 5.67995 5.77048 5.81714 5.87374 5.98415 6.01870 6.06684 6.23101 6.29090 6.39603 6.45411 6.52508 6.62378 6.70905 6.80066 6.94068 7.26857 7.31166 7.58941 7.75085 7.98955 8.02380 8.40048 9.16833 9.80277 10.36413 11.23958 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.019291 B = 0.002345 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.115670 B =11935.433149 C =12556.174772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C 0.130 3.870 4 N -0.713 5.713 5 C 0.556 3.444 6 O -0.503 6.503 7 C -0.095 4.095 8 C -0.019 4.019 9 C -0.141 4.141 10 C 0.127 3.873 11 N -0.309 5.309 12 N -0.108 5.108 13 N -0.009 5.009 14 N -0.289 5.289 15 C 0.273 3.727 16 C -0.130 4.130 17 C 0.171 3.829 18 N -0.591 5.591 19 C -0.251 4.251 20 H 0.064 0.936 21 C 0.002 3.998 22 N -0.904 5.904 23 Si 0.901 3.099 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.146 3.854 28 C -0.120 4.120 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.399 0.601 35 H 0.165 0.835 36 H 0.177 0.823 37 H 0.185 0.815 38 H 0.057 0.943 39 H 0.043 0.957 40 H 0.021 0.979 41 H 0.086 0.914 42 H 0.254 0.746 43 H 0.021 0.979 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.999 15.996 7.239 18.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.065 4.065 3 C 0.008 3.992 4 N -0.366 5.366 5 C 0.340 3.660 6 O -0.378 6.378 7 C -0.105 4.105 8 C -0.045 4.045 9 C -0.165 4.165 10 C 0.000 4.000 11 N -0.090 5.090 12 N -0.091 5.091 13 N -0.002 5.002 14 N -0.146 5.146 15 C 0.014 3.986 16 C -0.169 4.169 17 C 0.045 3.955 18 N -0.314 5.314 19 C -0.381 4.381 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.549 5.549 23 Si 0.731 3.269 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.209 1.209 27 C 0.019 3.981 28 C -0.160 4.160 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.236 0.764 35 H 0.182 0.818 36 H 0.194 0.806 37 H 0.202 0.798 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.039 0.961 41 H 0.104 0.896 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.821 17.820 6.513 19.845 hybrid contribution -0.177 -1.666 1.012 1.957 sum -5.998 16.153 7.525 18.802 Atomic orbital electron populations 1.21951 0.94660 1.03123 1.00219 1.20719 0.95787 0.91874 0.98130 1.21641 0.99383 0.92189 0.86022 1.45936 1.53417 1.10797 1.26451 1.17399 0.81576 0.82188 0.84843 1.90924 1.36044 1.65586 1.45232 1.20386 1.02814 0.88308 0.98943 1.22090 0.90621 1.00916 0.90880 1.21058 1.02984 0.92574 0.99867 1.21815 0.91322 0.92684 0.94215 1.49022 1.32488 1.10734 1.16733 1.82816 1.16846 0.91477 1.17913 1.78063 1.08376 1.15579 0.98182 1.75313 1.20272 0.95249 1.23775 1.23616 0.94295 0.95338 0.85355 1.22266 1.00848 0.99604 0.94224 1.20793 0.96464 0.87758 0.90458 1.44017 1.66812 1.21082 0.99456 1.19152 1.19285 0.93483 1.06140 0.91778 1.25001 0.97119 0.97526 0.99972 1.70011 1.27919 1.38952 1.17999 0.86390 0.81324 0.81847 0.77347 1.21070 1.21677 1.20892 1.20913 0.96410 0.90605 0.90142 1.22000 1.00884 0.98150 0.94963 0.93253 0.90597 0.93864 0.91398 0.91179 0.76411 0.81761 0.80558 0.79792 0.92388 0.93858 0.96100 0.89617 0.93652 0.96138 0.92871 0.92813 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 7.54 37.16 0.28 -1.52 16 2 C -0.06 -0.89 0.53 -154.46 -0.08 -0.97 16 3 C 0.13 1.65 4.56 -4.04 -0.02 1.63 16 4 N -0.71 -7.66 4.90 -61.42 -0.30 -7.96 16 5 C 0.56 7.06 7.77 -12.57 -0.10 6.96 16 6 O -0.50 -8.64 16.28 5.26 0.09 -8.55 16 7 C -0.10 -0.95 6.06 -102.72 -0.62 -1.58 16 8 C -0.02 -0.10 9.63 -38.74 -0.37 -0.47 16 9 C -0.14 -0.39 9.92 -40.09 -0.40 -0.79 16 10 C 0.13 0.59 11.15 -16.89 -0.19 0.41 16 11 N -0.31 -3.11 3.94 -10.99 -0.04 -3.15 16 12 N -0.11 -1.36 13.99 60.35 0.84 -0.52 16 13 N -0.01 -0.14 13.36 60.35 0.81 0.67 16 14 N -0.29 -4.59 11.75 32.20 0.38 -4.22 16 15 C 0.27 3.44 7.85 -154.51 -1.21 2.22 16 16 C -0.13 -2.07 4.75 -26.62 -0.13 -2.20 16 17 C 0.17 3.59 4.84 -3.71 -0.02 3.57 16 18 N -0.59 -13.59 2.99 -172.32 -0.52 -14.11 16 19 C -0.25 -6.54 9.59 -15.06 -0.14 -6.69 16 20 H 0.06 1.66 7.89 -52.48 -0.41 1.25 16 21 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 22 N -0.90 -24.80 11.19 55.49 0.62 -24.17 16 23 Si 0.90 20.94 29.59 -169.99 -5.03 15.91 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.15 2.77 6.04 -3.71 -0.02 2.75 16 28 C -0.12 -1.86 4.91 -26.61 -0.13 -1.99 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.16 4.98 -51.93 -0.26 0.90 16 31 H 0.04 0.44 6.86 -51.93 -0.36 0.09 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.40 3.27 4.26 -40.82 -0.17 3.09 16 35 H 0.16 0.38 6.49 -52.48 -0.34 0.04 16 36 H 0.18 -0.22 8.06 -52.49 -0.42 -0.64 16 37 H 0.19 0.18 8.06 -52.49 -0.42 -0.24 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.04 0.56 6.82 -51.93 -0.35 0.21 16 40 H 0.02 0.45 6.69 -51.93 -0.35 0.11 16 41 H 0.09 2.09 6.04 -51.93 -0.31 1.78 16 42 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 43 H 0.02 0.39 6.69 -51.93 -0.35 0.04 16 44 H 0.05 1.02 7.94 -51.93 -0.41 0.61 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 367.29 15.07 5.53 5.53 Total: -1.00 -34.97 367.29 -6.69 -41.66 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -5.84 Total: -2.42 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -3.24 Total: 1.33 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 1.79 Total: -53.46 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.97 -6.69 -41.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754716696.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.750 kcal (2) G-P(sol) polarization free energy of solvation -34.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds