Wall clock time and date at job start Wed Apr 1 2020 03:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46352 * 2 1 4 4 N 1.46506 * 109.46702 * 60.03180 * 3 2 1 5 5 C 1.34776 * 119.99760 * 180.02562 * 4 3 2 6 6 O 1.21617 * 120.00146 * 359.97438 * 5 4 3 7 7 C 1.47311 * 119.99723 * 179.97438 * 5 4 3 8 8 C 1.39008 * 120.90866 * 359.97312 * 7 5 4 9 9 C 1.39715 * 119.29564 * 180.02562 * 8 7 5 10 10 C 1.35258 * 121.07803 * 359.97438 * 9 8 7 11 11 N 1.35719 * 121.57409 * 0.02562 * 10 9 8 12 12 N 1.40202 * 134.09187 * 180.02562 * 11 10 9 13 13 N 1.29015 * 106.96480 * 179.97438 * 12 11 10 14 14 N 1.28588 * 110.78595 * 359.76737 * 13 12 11 15 15 C 1.32051 * 110.21505 * 0.38294 * 14 13 12 16 16 C 1.53036 * 109.44816 * 119.97341 * 2 1 3 17 17 C 1.53186 * 109.31474 * 58.64489 * 16 2 1 18 18 N 1.46928 * 108.77574 * 54.63745 * 17 16 2 19 19 C 1.36934 * 120.62943 * 126.41411 * 18 17 16 20 20 H 1.08008 * 119.99843 * 207.65839 * 19 18 17 21 21 C 1.38816 * 120.00610 * 27.66210 * 19 18 17 22 22 N 1.31618 * 119.99627 * 17.36467 * 21 19 18 23 23 Si 1.86797 * 120.00155 * 197.36705 * 21 19 18 24 24 H 1.48497 * 109.47366 * 59.99949 * 23 21 19 25 25 H 1.48496 * 109.46746 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46989 * 299.99474 * 23 21 19 27 27 C 1.46928 * 118.73649 * 306.38754 * 18 17 16 28 28 C 1.53048 * 109.45754 * 240.03023 * 2 1 3 29 29 H 1.09001 * 109.47188 * 59.99372 * 1 2 3 30 30 H 1.08998 * 109.47433 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46862 * 300.00031 * 1 2 3 32 32 H 1.08996 * 109.47001 * 300.02939 * 3 2 1 33 33 H 1.09000 * 109.47187 * 180.02562 * 3 2 1 34 34 H 0.96998 * 119.99674 * 359.97438 * 4 3 2 35 35 H 1.08004 * 120.34805 * 0.04861 * 8 7 5 36 36 H 1.08001 * 119.46138 * 179.97438 * 9 8 7 37 37 H 1.07998 * 119.21669 * 179.97438 * 10 9 8 38 38 H 1.09005 * 109.49557 * 178.59771 * 16 2 1 39 39 H 1.08997 * 109.49454 * 298.68829 * 16 2 1 40 40 H 1.08993 * 109.58915 * 294.84500 * 17 16 2 41 41 H 1.09002 * 109.58780 * 174.42092 * 17 16 2 42 42 H 0.96996 * 120.00139 * 180.02562 * 22 21 19 43 43 H 1.09001 * 109.58587 * 293.82222 * 27 18 17 44 44 H 1.08999 * 109.69784 * 173.47050 * 27 18 17 45 45 H 1.09000 * 109.49736 * 61.30809 * 28 2 1 46 46 H 1.08995 * 109.49576 * 181.40677 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 7 1.5519 2.1328 1.1966 5 6 1.8770 3.4233 1.4098 6 8 2.5757 4.0147 0.6090 7 6 1.3860 4.1175 2.6127 8 6 0.5859 3.4600 3.5399 9 6 0.1384 4.1511 4.6688 10 6 0.4717 5.4461 4.8722 11 7 1.2504 6.1261 3.9929 12 7 1.7467 7.4363 3.9398 13 7 2.4430 7.5315 2.8579 14 7 2.4464 6.4163 2.2178 15 6 1.7267 5.5172 2.8637 16 6 2.0395 -0.7209 1.2500 17 6 1.4989 -2.1542 1.2641 18 7 1.8619 -2.8089 -0.0001 19 6 2.5252 -4.0069 0.0000 20 1 3.1669 -4.2690 -0.8284 21 6 2.3728 -4.8847 1.0645 22 7 1.3596 -4.7449 1.8929 23 14 3.6059 -6.2642 1.3215 24 1 4.9592 -5.6873 1.5231 25 1 3.2219 -7.0546 2.5185 26 1 3.6168 -7.1470 0.1275 27 6 1.4991 -2.1541 -1.2644 28 6 2.0398 -0.7209 -1.2501 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6760 1.9565 -0.8897 33 1 3.1298 1.4427 -0.0005 34 1 0.9944 1.6613 1.8351 35 1 0.3133 2.4258 3.3895 36 1 -0.4837 3.6430 5.3907 37 1 0.1088 5.9514 5.7550 38 1 3.1293 -0.7432 1.2384 39 1 1.6956 -0.1935 2.1397 40 1 0.4141 -2.1345 1.3672 41 1 1.9374 -2.7019 2.0983 42 1 1.2533 -5.3579 2.6370 43 1 0.4142 -2.1345 -1.3676 44 1 1.9358 -2.7011 -2.1000 45 1 1.6959 -0.1935 -2.1399 46 1 3.1295 -0.7431 -1.2382 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754716696.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:36 Heat of formation + Delta-G solvation = 115.152326 kcal Electronic energy + Delta-G solvation = -29994.010452 eV Core-core repulsion = 25921.646849 eV Total energy + Delta-G solvation = -4072.363603 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.50302 -41.24882 -39.99917 -39.30209 -36.60427 -35.25393 -34.57733 -33.13960 -32.71195 -31.61584 -31.50898 -28.68900 -28.02093 -26.53643 -25.65022 -25.37078 -24.36033 -23.80766 -22.43407 -21.81478 -19.97911 -19.58150 -18.81740 -18.61212 -18.07113 -18.04762 -16.85822 -16.77466 -16.55535 -16.39728 -15.80092 -15.44411 -15.34542 -14.98165 -14.95264 -14.84151 -14.39662 -14.19560 -14.11774 -13.85008 -13.68136 -13.44826 -13.27132 -13.13098 -12.91479 -12.60890 -12.56012 -12.51046 -12.33658 -12.19368 -12.16076 -11.86411 -11.73944 -11.41576 -11.31790 -11.25245 -11.01024 -10.97479 -10.43613 -10.17664 -9.71488 -8.57486 -7.82769 -5.24836 -1.07634 -0.60355 0.57216 0.94897 1.45763 1.48636 1.50576 1.56609 1.94053 2.27813 2.47488 2.54669 2.84259 3.30912 3.37812 3.57371 3.71777 3.77967 3.85615 3.92797 3.99667 4.01357 4.19491 4.34484 4.47359 4.56409 4.57866 4.68292 4.74105 4.77491 4.83441 4.90758 4.92908 4.97470 5.02777 5.13996 5.19510 5.30087 5.35474 5.38080 5.41121 5.47177 5.58233 5.61723 5.72986 5.94143 6.44568 6.46215 7.12744 7.15836 7.22922 7.95918 8.44804 9.22466 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.019291 B = 0.002345 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.115670 B =11935.433149 C =12556.174772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.053 4.053 3 C 0.142 3.858 4 N -0.698 5.698 5 C 0.558 3.442 6 O -0.561 6.561 7 C -0.136 4.136 8 C 0.021 3.979 9 C -0.114 4.114 10 C 0.121 3.879 11 N -0.306 5.306 12 N -0.121 5.121 13 N -0.039 5.039 14 N -0.345 5.345 15 C 0.254 3.746 16 C -0.118 4.118 17 C 0.177 3.823 18 N -0.610 5.610 19 C -0.261 4.261 20 H 0.058 0.942 21 C -0.045 4.045 22 N -0.928 5.928 23 Si 0.957 3.043 24 H -0.283 1.283 25 H -0.292 1.292 26 H -0.280 1.280 27 C 0.143 3.857 28 C -0.114 4.114 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.414 0.586 35 H 0.203 0.797 36 H 0.236 0.764 37 H 0.227 0.773 38 H 0.039 0.961 39 H 0.080 0.920 40 H 0.014 0.986 41 H 0.048 0.952 42 H 0.250 0.750 43 H 0.025 0.975 44 H 0.043 0.957 45 H 0.079 0.921 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.340 15.844 9.526 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.054 4.054 3 C 0.018 3.982 4 N -0.352 5.352 5 C 0.345 3.655 6 O -0.439 6.439 7 C -0.146 4.146 8 C -0.004 4.004 9 C -0.136 4.136 10 C -0.005 4.005 11 N -0.086 5.086 12 N -0.105 5.105 13 N -0.032 5.032 14 N -0.204 5.204 15 C -0.003 4.003 16 C -0.157 4.157 17 C 0.052 3.948 18 N -0.334 5.334 19 C -0.392 4.392 20 H 0.075 0.925 21 C -0.241 4.241 22 N -0.574 5.574 23 Si 0.786 3.214 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.018 3.982 28 C -0.154 4.154 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.254 0.746 35 H 0.220 0.780 36 H 0.253 0.747 37 H 0.243 0.757 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.032 0.968 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.043 0.957 44 H 0.062 0.938 45 H 0.098 0.902 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.189 17.661 8.813 21.370 hybrid contribution 0.390 -1.747 0.414 1.838 sum -7.800 15.914 9.227 19.981 Atomic orbital electron populations 1.21898 0.93063 1.01999 1.02556 1.20569 0.96857 0.91930 0.96030 1.21351 0.98456 0.91261 0.87113 1.45700 1.53175 1.10271 1.26067 1.17771 0.80481 0.82199 0.85071 1.90899 1.38745 1.66840 1.47459 1.20173 1.06736 0.87593 1.00058 1.22717 0.86394 1.02084 0.89230 1.21823 1.01266 0.91305 0.99254 1.22977 0.89593 0.93637 0.94298 1.49141 1.32707 1.09815 1.16953 1.82608 1.17199 0.93167 1.17487 1.77978 1.09817 1.16258 0.99155 1.75134 1.22927 0.96362 1.25966 1.23818 0.94438 0.96054 0.85990 1.22081 0.99555 0.96975 0.97065 1.20644 0.95784 0.89923 0.88429 1.44292 1.66935 1.20757 1.01423 1.19412 1.19198 0.94677 1.05902 0.92459 1.25612 0.98638 0.99703 1.00162 1.70131 1.29189 1.39747 1.18362 0.85499 0.79361 0.79520 0.76996 1.20964 1.21832 1.20596 1.21027 0.96661 0.92302 0.88240 1.21894 1.00046 0.96183 0.97236 0.91844 0.93302 0.90781 0.91144 0.92806 0.74631 0.78047 0.74725 0.75695 0.94215 0.90196 0.96810 0.93372 0.94121 0.95716 0.93848 0.90208 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 7.54 71.98 0.54 -2.48 16 2 C -0.05 -1.35 0.53 -52.15 -0.03 -1.38 16 3 C 0.14 3.31 4.56 86.38 0.39 3.71 16 4 N -0.70 -12.99 4.90 -466.47 -2.29 -15.27 16 5 C 0.56 13.53 7.77 86.63 0.67 14.20 16 6 O -0.56 -19.84 16.28 -4.08 -0.07 -19.91 16 7 C -0.14 -2.42 6.06 -18.63 -0.11 -2.53 16 8 C 0.02 0.09 9.63 22.81 0.22 0.31 16 9 C -0.11 0.17 9.92 21.94 0.22 0.38 16 10 C 0.12 0.55 11.15 83.40 0.93 1.48 16 11 N -0.31 -5.66 3.94 -188.68 -0.74 -6.40 16 12 N -0.12 -3.10 13.99 37.02 0.52 -2.59 16 13 N -0.04 -1.26 13.36 37.02 0.49 -0.76 16 14 N -0.35 -11.65 11.75 -52.05 -0.61 -12.27 16 15 C 0.25 6.34 7.85 135.75 1.07 7.41 16 16 C -0.12 -3.54 4.75 30.67 0.15 -3.39 16 17 C 0.18 7.40 4.84 86.36 0.42 7.81 16 18 N -0.61 -28.30 2.99 -699.10 -2.09 -30.40 16 19 C -0.26 -13.84 9.59 84.03 0.81 -13.04 16 20 H 0.06 3.03 7.89 -2.91 -0.02 3.01 16 21 C -0.05 -2.43 4.91 84.86 0.42 -2.01 16 22 N -0.93 -51.54 11.19 21.65 0.24 -51.30 16 23 Si 0.96 43.51 29.59 68.60 2.03 45.54 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 27 C 0.14 5.41 6.04 86.36 0.52 5.93 16 28 C -0.11 -3.38 4.91 30.67 0.15 -3.23 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.05 1.38 4.98 -2.39 -0.01 1.36 16 31 H 0.07 1.15 6.86 -2.39 -0.02 1.13 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.41 4.75 4.26 -92.71 -0.39 4.36 16 35 H 0.20 -0.61 6.49 -2.91 -0.02 -0.63 16 36 H 0.24 -2.89 8.06 -2.91 -0.02 -2.91 16 37 H 0.23 -0.92 8.06 -2.91 -0.02 -0.94 16 38 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.08 1.79 6.82 -2.39 -0.02 1.77 16 40 H 0.01 0.59 6.69 -2.39 -0.02 0.58 16 41 H 0.05 2.37 6.04 -2.39 -0.01 2.36 16 42 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 43 H 0.02 0.93 6.69 -2.39 -0.02 0.91 16 44 H 0.04 1.68 7.94 -2.39 -0.02 1.66 16 45 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -86.42 367.29 4.48 -81.93 By element: Atomic # 1 Polarization: -2.39 SS G_CDS: 0.64 Total: -1.75 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 6.36 Total: 13.18 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -4.48 Total: -118.99 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.07 Total: -19.91 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -86.42 4.48 -81.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754716696.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.085 kcal (2) G-P(sol) polarization free energy of solvation -86.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds