Wall clock time and date at job start Wed Apr 1 2020 02:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.52299 * 2 1 4 4 N 1.46498 * 109.47104 * 60.08452 * 3 2 1 5 5 C 1.34781 * 120.00038 * 180.02562 * 4 3 2 6 6 O 1.21524 * 119.99851 * 359.97438 * 5 4 3 7 7 C 1.48119 * 119.99974 * 179.97438 * 5 4 3 8 8 C 1.39812 * 119.37484 * 179.73304 * 7 5 4 9 9 C 1.36969 * 119.60762 * 179.70357 * 8 7 5 10 10 C 1.39808 * 118.25398 * 0.57280 * 9 8 7 11 11 N 1.34657 * 135.01012 * 179.72172 * 10 9 8 12 12 N 1.28663 * 109.16279 * 179.97438 * 11 10 9 13 13 N 1.28768 * 111.84832 * 0.02562 * 12 11 10 14 14 H 0.96998 * 125.86421 * 180.02562 * 13 12 11 15 15 C 1.37258 * 108.28196 * 359.97438 * 13 12 11 16 16 N 1.31952 * 134.70971 * 180.02562 * 15 13 12 17 17 C 1.53044 * 109.49934 * 239.92098 * 2 1 3 18 18 C 1.53039 * 109.53659 * 301.41211 * 17 2 1 19 19 C 1.53192 * 109.31438 * 298.63429 * 18 17 2 20 20 N 1.46931 * 108.77505 * 54.63149 * 19 18 17 21 21 C 1.36938 * 120.62748 * 126.41565 * 20 19 18 22 22 H 1.08000 * 119.99621 * 331.80608 * 21 20 19 23 23 C 1.38813 * 119.99858 * 151.80624 * 21 20 19 24 24 N 1.31615 * 119.99942 * 343.08535 * 23 21 20 25 25 Si 1.86799 * 119.99873 * 163.08793 * 23 21 20 26 26 H 1.48497 * 109.47297 * 59.99890 * 25 23 21 27 27 H 1.48501 * 109.47142 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46963 * 299.99753 * 25 23 21 29 29 C 1.46924 * 118.74067 * 306.39543 * 20 19 18 30 30 H 1.09008 * 109.47309 * 299.91594 * 1 2 3 31 31 H 1.09004 * 109.47501 * 59.91965 * 1 2 3 32 32 H 1.09008 * 109.47117 * 179.91717 * 1 2 3 33 33 H 1.09002 * 109.47224 * 180.08419 * 3 2 1 34 34 H 1.09004 * 109.47373 * 300.08043 * 3 2 1 35 35 H 0.96998 * 120.00164 * 359.97438 * 4 3 2 36 36 H 1.08004 * 120.19403 * 359.97438 * 8 7 5 37 37 H 1.08000 * 120.87564 * 180.23076 * 9 8 7 38 38 H 1.08998 * 109.45924 * 181.39108 * 17 2 1 39 39 H 1.09004 * 109.45908 * 61.43352 * 17 2 1 40 40 H 1.08997 * 109.49655 * 178.68251 * 18 17 2 41 41 H 1.09001 * 109.52411 * 58.60190 * 18 17 2 42 42 H 1.09006 * 109.58260 * 294.84975 * 19 18 17 43 43 H 1.08997 * 109.59025 * 174.42115 * 19 18 17 44 44 H 0.96999 * 119.99981 * 179.97438 * 24 23 21 45 45 H 1.09000 * 109.58504 * 173.39178 * 29 20 19 46 46 H 1.09000 * 109.58464 * 293.82154 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0412 1.4420 0.0000 4 7 1.5552 2.1325 1.1972 5 6 1.8818 3.4226 1.4104 6 8 2.5799 4.0130 0.6098 7 6 1.3899 4.1209 2.6205 8 6 1.7413 5.4575 2.8315 9 6 1.2841 6.1096 3.9459 10 6 0.4836 5.4001 4.8461 11 7 -0.1258 5.6897 6.0114 12 7 -0.7515 4.6469 6.4314 13 7 -0.6136 3.6496 5.6286 14 1 -0.9986 2.7672 5.7470 15 6 0.1710 4.0496 4.5758 16 7 0.6300 3.4652 3.4854 17 6 2.0408 -0.7231 -1.2484 18 6 1.5030 -2.1557 -1.2660 19 6 2.0140 -2.9040 -0.0308 20 7 1.6516 -2.1381 1.1696 21 6 0.9640 -2.7314 2.1944 22 1 0.3020 -3.5604 1.9919 23 6 1.1179 -2.2674 3.4936 24 7 2.1440 -1.5032 3.8022 25 14 -0.1313 -2.7278 4.8039 26 1 -0.1711 -4.2048 4.9528 27 1 0.2578 -2.1107 6.0974 28 1 -1.4734 -2.2344 4.4034 29 6 2.0413 -0.7238 1.2496 30 1 -0.3634 0.5126 0.8908 31 1 -0.3634 0.5151 -0.8893 32 1 -0.3634 -1.0277 -0.0015 33 1 3.1312 1.4411 -0.0015 34 1 1.6772 1.9567 -0.8893 35 1 0.9977 1.6614 1.8360 36 1 2.3660 5.9741 2.1178 37 1 1.5399 7.1431 4.1273 38 1 3.1305 -0.7443 -1.2353 39 1 1.6987 -0.1957 -2.1390 40 1 1.8481 -2.6627 -2.1671 41 1 0.4132 -2.1360 -1.2544 42 1 3.0980 -3.0042 -0.0869 43 1 1.5554 -3.8918 0.0137 44 1 2.2514 -1.1787 4.7100 45 1 1.6007 -0.2731 2.1389 46 1 3.1275 -0.6463 1.2979 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754727878.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:30 Heat of formation + Delta-G solvation = 90.840319 kcal Electronic energy + Delta-G solvation = -30778.399968 eV Core-core repulsion = 26704.982117 eV Total energy + Delta-G solvation = -4073.417851 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.58065 -41.46436 -40.24110 -39.27316 -36.39155 -35.49763 -34.90343 -33.29290 -32.79855 -32.10536 -31.55622 -28.12465 -27.69775 -27.14362 -26.20896 -24.97051 -23.97203 -23.84197 -22.41191 -21.72060 -20.22762 -19.80816 -19.49039 -18.89304 -18.47916 -17.82325 -17.12322 -16.79752 -16.50568 -16.42325 -15.85887 -15.44615 -15.38677 -15.19322 -14.78400 -14.61878 -14.47589 -14.34006 -14.19287 -13.77199 -13.68891 -13.60981 -13.10079 -13.03079 -13.02209 -12.86161 -12.71975 -12.57622 -12.29114 -12.18419 -11.86085 -11.72355 -11.62911 -11.38865 -11.15245 -10.95966 -10.74393 -10.50733 -10.48410 -10.32292 -10.04680 -8.61086 -7.83924 -5.28425 -1.11149 -0.20258 0.83604 0.96188 1.44581 1.45966 1.52345 1.57856 1.99673 2.50991 2.51331 2.53087 2.99726 3.16181 3.28835 3.52281 3.62224 3.67908 3.96362 4.05463 4.06418 4.18844 4.23015 4.38975 4.52233 4.56580 4.67113 4.71383 4.76350 4.76863 4.82859 5.01468 5.05803 5.12968 5.14971 5.19556 5.26626 5.32896 5.40522 5.44372 5.48498 5.52231 5.63215 5.73654 5.80399 6.10347 6.41483 6.44932 6.86778 6.99361 7.18494 7.90562 8.42565 9.20385 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010071 B = 0.004142 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.677041 B = 6757.648040 C = 9033.017067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.092 4.092 3 C 0.137 3.863 4 N -0.696 5.696 5 C 0.568 3.432 6 O -0.550 6.550 7 C 0.139 3.861 8 C -0.114 4.114 9 C 0.014 3.986 10 C -0.033 4.033 11 N -0.254 5.254 12 N 0.007 4.993 13 N -0.392 5.392 14 H 0.469 0.531 15 C 0.201 3.799 16 N -0.460 5.460 17 C -0.094 4.094 18 C -0.124 4.124 19 C 0.136 3.864 20 N -0.604 5.604 21 C -0.256 4.256 22 H 0.062 0.938 23 C -0.042 4.042 24 N -0.927 5.927 25 Si 0.954 3.046 26 H -0.282 1.282 27 H -0.297 1.297 28 H -0.275 1.275 29 C 0.197 3.803 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.412 0.588 36 H 0.189 0.811 37 H 0.200 0.800 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.008 0.992 43 H 0.049 0.951 44 H 0.246 0.754 45 H 0.062 0.938 46 H -0.018 1.018 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.726 12.914 -5.210 14.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.094 4.094 3 C 0.014 3.986 4 N -0.346 5.346 5 C 0.352 3.648 6 O -0.428 6.428 7 C -0.015 4.015 8 C -0.137 4.137 9 C -0.016 4.016 10 C -0.161 4.161 11 N -0.130 5.130 12 N 0.023 4.977 13 N -0.125 5.125 14 H 0.320 0.680 15 C -0.044 4.044 16 N -0.177 5.177 17 C -0.132 4.132 18 C -0.162 4.162 19 C 0.010 3.990 20 N -0.327 5.327 21 C -0.387 4.387 22 H 0.080 0.920 23 C -0.237 4.237 24 N -0.573 5.573 25 Si 0.783 3.217 26 H -0.208 1.208 27 H -0.223 1.223 28 H -0.201 1.201 29 C 0.071 3.929 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.249 0.751 36 H 0.206 0.794 37 H 0.218 0.782 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.026 0.974 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.081 0.919 46 H 0.000 1.000 Dipole moment (debyes) X Y Z Total from point charges -4.052 12.983 -4.429 14.304 hybrid contribution -0.228 -1.224 0.965 1.575 sum -4.280 11.759 -3.464 12.984 Atomic orbital electron populations 1.21638 0.93745 1.01785 1.00410 1.21359 0.96904 0.92903 0.98264 1.21475 0.98690 0.91555 0.86928 1.46060 1.51587 1.11236 1.25694 1.17879 0.80334 0.82096 0.84454 1.90767 1.38932 1.66864 1.46232 1.21270 0.94296 0.93205 0.92773 1.21947 1.00128 0.92764 0.98890 1.20945 0.90034 1.02004 0.88628 1.21077 1.04019 0.94070 0.96894 1.75371 1.10385 1.17591 1.09678 1.78051 1.14649 0.90804 1.14175 1.44789 1.38053 1.15204 1.14466 0.67988 1.19974 0.99280 0.92518 0.92620 1.66199 1.11061 1.38925 1.01486 1.21373 0.99876 0.95727 0.96192 1.21921 1.00933 0.95772 0.97619 1.21114 0.95971 0.94586 0.87310 1.44216 1.65284 1.06486 1.16692 1.19388 1.17518 1.15187 0.86590 0.91995 1.25617 0.98393 1.01155 0.98581 1.70181 1.28774 1.39898 1.18493 0.85551 0.79737 0.77832 0.78610 1.20799 1.22296 1.20112 1.20552 0.93801 0.83680 0.94864 0.94678 0.91581 0.92662 0.92222 0.89661 0.75099 0.79398 0.78249 0.92761 0.89948 0.90159 0.91827 0.97449 0.93202 0.94487 0.91944 0.99997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.75 7.81 71.98 0.56 -3.19 16 2 C -0.09 -3.05 0.53 -52.11 -0.03 -3.08 16 3 C 0.14 4.18 4.57 86.38 0.39 4.57 16 4 N -0.70 -22.19 4.98 -465.69 -2.32 -24.51 16 5 C 0.57 17.36 7.81 86.87 0.68 18.04 16 6 O -0.55 -18.03 16.29 -3.79 -0.06 -18.09 16 7 C 0.14 3.73 6.74 42.05 0.28 4.01 16 8 C -0.11 -2.22 9.55 22.35 0.21 -2.00 16 9 C 0.01 0.25 10.16 22.35 0.23 0.47 16 10 C -0.03 -0.79 7.38 39.83 0.29 -0.49 16 11 N -0.25 -6.50 12.43 -52.29 -0.65 -7.15 16 12 N 0.01 0.16 13.28 37.02 0.49 0.66 16 13 N -0.39 -9.25 7.06 -55.41 -0.39 -9.64 16 14 H 0.47 8.78 8.96 -219.84 -1.97 6.81 16 15 C 0.20 5.40 8.56 134.30 1.15 6.55 16 16 N -0.46 -13.41 9.54 -182.09 -1.74 -15.14 16 17 C -0.09 -2.68 4.71 30.62 0.14 -2.54 16 18 C -0.12 -3.70 5.74 30.67 0.18 -3.53 16 19 C 0.14 5.33 6.52 86.36 0.56 5.90 16 20 N -0.60 -28.48 2.43 -699.08 -1.70 -30.18 16 21 C -0.26 -13.42 9.58 84.03 0.81 -12.61 16 22 H 0.06 3.20 7.89 -2.91 -0.02 3.18 16 23 C -0.04 -2.22 4.92 84.86 0.42 -1.80 16 24 N -0.93 -52.45 11.20 21.65 0.24 -52.21 16 25 Si 0.95 42.92 29.59 68.60 2.03 44.95 16 26 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 27 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 28 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 29 C 0.20 8.76 3.72 86.36 0.32 9.08 16 30 H 0.03 1.16 6.87 -2.38 -0.02 1.15 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.95 5.97 -2.38 -0.01 1.94 16 33 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.09 2.27 8.14 -2.38 -0.02 2.26 16 35 H 0.41 14.23 5.53 -92.71 -0.51 13.71 16 36 H 0.19 2.83 7.61 -2.91 -0.02 2.80 16 37 H 0.20 1.72 8.06 -2.91 -0.02 1.70 16 38 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 40 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.06 1.92 6.33 -2.39 -0.02 1.91 16 42 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 43 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 44 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 45 H 0.06 3.11 4.96 -2.39 -0.01 3.09 16 46 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 Total: -1.00 -66.65 369.97 0.67 -65.98 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: -1.43 Total: 25.96 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: 6.20 Total: 19.38 kcal Atomic # 7 Polarization: -132.12 SS G_CDS: -6.07 Total: -138.19 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.06 Total: -18.09 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -66.65 0.67 -65.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754727878.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.820 kcal (2) G-P(sol) polarization free energy of solvation -66.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds