Wall clock time and date at job start Wed Apr 1 2020 03:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40176 * 120.36223 * 2 1 4 4 N 1.31258 * 120.35530 * 180.25476 * 3 2 1 5 5 C 1.33995 * 120.87566 * 359.44740 * 4 3 2 6 6 N 1.32503 * 132.33348 * 180.16885 * 5 4 3 7 7 C 1.33469 * 109.74865 * 180.34983 * 6 5 4 8 8 C 1.48133 * 125.32241 * 180.02562 * 7 6 5 9 9 O 1.21521 * 119.99587 * 179.97438 * 8 7 6 10 10 N 1.34773 * 119.99648 * 359.97210 * 8 7 6 11 11 C 1.46504 * 119.99585 * 179.97438 * 10 8 7 12 12 H 1.09002 * 110.01619 * 325.70554 * 11 10 8 13 13 C 1.53871 * 110.03089 * 87.09606 * 11 10 8 14 14 C 1.54265 * 106.60044 * 119.28511 * 13 11 10 15 15 C 1.54882 * 104.19459 * 23.60688 * 14 13 11 16 16 H 1.09003 * 110.75314 * 80.37771 * 15 14 13 17 17 C 1.53000 * 110.75573 * 203.56044 * 15 14 13 18 18 N 1.46511 * 109.47156 * 293.54626 * 17 15 14 19 19 C 1.36932 * 119.99907 * 180.02562 * 18 17 15 20 20 H 1.08007 * 120.00221 * 359.97438 * 19 18 17 21 21 C 1.38806 * 119.99975 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99815 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00075 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47139 * 59.99933 * 23 21 19 25 25 H 1.48505 * 109.46932 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47070 * 299.99413 * 23 21 19 27 27 C 1.54267 * 110.03383 * 204.31285 * 11 10 8 28 28 N 1.31995 * 109.35194 * 359.97438 * 7 6 5 29 29 N 1.36871 * 120.22853 * 0.54765 * 5 4 3 30 30 C 1.35678 * 120.36417 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.47395 * 90.00057 * 1 2 3 32 32 H 1.08998 * 109.47056 * 209.99957 * 1 2 3 33 33 H 1.09001 * 109.47311 * 330.00483 * 1 2 3 34 34 H 1.08002 * 119.81984 * 359.97337 * 3 2 1 35 35 H 0.96991 * 120.00337 * 0.02562 * 10 8 7 36 36 H 1.09001 * 110.03319 * 238.56800 * 13 11 10 37 37 H 1.09005 * 110.03070 * 359.94992 * 13 11 10 38 38 H 1.09002 * 110.48965 * 142.29226 * 14 13 11 39 39 H 1.09008 * 110.48358 * 264.79742 * 14 13 11 40 40 H 1.08994 * 109.47231 * 53.54939 * 17 15 14 41 41 H 1.09003 * 109.47100 * 173.54989 * 17 15 14 42 42 H 0.96995 * 119.99638 * 0.02562 * 18 17 15 43 43 H 0.97002 * 119.99598 * 180.02562 * 22 21 19 44 44 H 1.09007 * 110.48322 * 335.78763 * 27 11 10 45 45 H 1.08996 * 110.48654 * 98.42797 * 27 11 10 46 46 H 1.07996 * 120.48431 * 0.04747 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2155 1.2095 0.0000 4 7 3.5281 1.2093 -0.0050 5 6 4.2156 0.0592 0.0008 6 7 5.5142 -0.2041 0.0007 7 6 5.7065 -1.5248 0.0005 8 6 7.0260 -2.1982 0.0009 9 8 7.0887 -3.4118 0.0012 10 7 8.1567 -1.4648 0.0008 11 6 9.4616 -2.1308 0.0017 12 1 9.4091 -3.0537 0.5794 13 6 9.8983 -2.4366 -1.4417 14 6 11.2196 -1.6747 -1.6732 15 6 11.7981 -1.4766 -0.2502 16 1 12.2982 -2.3823 0.0929 17 6 12.7564 -0.2844 -0.2155 18 7 13.9384 -0.5841 -1.0277 19 6 14.9405 0.3416 -1.1459 20 1 14.8594 1.2928 -0.6407 21 6 16.0601 0.0579 -1.9157 22 7 16.1587 -1.1011 -2.5316 23 14 17.4275 1.3204 -2.0764 24 1 17.9831 1.6221 -0.7327 25 1 18.5025 0.7779 -2.9456 26 1 16.8843 2.5645 -2.6783 27 6 10.5325 -1.1942 0.5982 28 7 4.5372 -2.1371 0.0011 29 7 3.5541 -1.1390 0.0009 30 6 2.1928 -1.1707 0.0005 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6785 2.1465 -0.0004 35 1 8.1066 -0.4962 0.0009 36 1 10.0586 -3.5077 -1.5643 37 1 9.1389 -2.0902 -2.1428 38 1 11.9007 -2.2685 -2.2828 39 1 11.0268 -0.7117 -2.1462 40 1 12.2546 0.5967 -0.6154 41 1 13.0614 -0.0932 0.8133 42 1 14.0110 -1.4382 -1.4816 43 1 16.9414 -1.2995 -3.0693 44 1 10.2286 -0.1525 0.4947 45 1 10.7120 -1.4380 1.6453 46 1 1.6668 -2.1138 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755737607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:56 Heat of formation + Delta-G solvation = 107.351783 kcal Electronic energy + Delta-G solvation = -28338.074393 eV Core-core repulsion = 24265.372533 eV Total energy + Delta-G solvation = -4072.701860 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.49653 -40.33634 -39.33398 -37.92120 -35.34461 -34.86693 -33.81884 -33.27504 -31.36745 -31.05843 -28.74376 -28.59106 -27.45917 -25.92204 -24.69019 -23.87086 -23.45356 -22.17250 -20.95057 -20.32760 -19.49794 -19.15030 -18.58553 -17.57458 -17.29696 -16.99729 -16.49919 -16.19422 -15.49896 -14.98499 -14.87515 -14.67177 -14.37973 -14.23496 -13.96178 -13.64433 -13.28218 -13.20588 -13.16825 -13.11472 -13.07993 -12.73432 -12.41114 -12.03247 -11.68558 -11.63471 -11.02166 -10.90626 -10.79299 -10.73455 -10.65956 -10.49393 -10.41484 -10.26058 -10.21493 -10.15104 -9.92591 -9.61183 -9.36974 -9.20234 -8.80342 -6.84686 -5.70415 -2.98400 -0.29759 -0.02102 1.13261 1.31083 2.41382 2.58335 2.78465 3.02531 3.46490 3.48398 3.52452 3.53659 3.57842 3.89573 4.00262 4.23918 4.49813 4.62501 4.73173 4.76705 4.81477 4.91392 5.04825 5.09626 5.19742 5.36595 5.41891 5.48964 5.50606 5.59831 5.65109 5.71233 5.73235 5.88779 5.95160 6.07631 6.18138 6.31801 6.36642 6.46397 6.62783 6.67189 6.73169 6.86707 7.00476 7.04405 7.34947 7.75193 7.84590 8.48901 9.59881 10.19240 10.54029 11.52508 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.024038 B = 0.001676 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.556515 B =16704.947812 C =17485.667793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.183 4.183 3 C 0.213 3.787 4 N -0.444 5.444 5 C 0.438 3.562 6 N -0.496 5.496 7 C 0.242 3.758 8 C 0.609 3.391 9 O -0.506 6.506 10 N -0.692 5.692 11 C 0.141 3.859 12 H 0.095 0.905 13 C -0.135 4.135 14 C -0.111 4.111 15 C -0.095 4.095 16 H 0.079 0.921 17 C 0.161 3.839 18 N -0.731 5.731 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.907 3.093 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.287 1.287 27 C -0.121 4.121 28 N -0.267 5.267 29 N -0.324 5.324 30 C 0.166 3.834 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.194 0.806 35 H 0.413 0.587 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.019 0.981 41 H 0.018 0.982 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.709 1.619 6.549 38.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.190 4.190 3 C 0.026 3.974 4 N -0.157 5.157 5 C 0.078 3.922 6 N -0.230 5.230 7 C -0.042 4.042 8 C 0.388 3.612 9 O -0.378 6.378 10 N -0.344 5.344 11 C 0.037 3.963 12 H 0.113 0.887 13 C -0.173 4.173 14 C -0.149 4.149 15 C -0.114 4.114 16 H 0.097 0.903 17 C 0.034 3.966 18 N -0.375 5.375 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.583 5.583 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.160 4.160 28 N -0.101 5.101 29 N -0.104 5.104 30 C 0.029 3.971 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.211 0.789 35 H 0.250 0.750 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -36.440 0.938 6.560 37.037 hybrid contribution 0.006 0.331 -0.320 0.460 sum -36.434 1.269 6.240 36.986 Atomic orbital electron populations 1.20664 0.86809 1.04466 1.03776 1.20703 0.99521 0.91977 1.06828 1.23683 0.88036 0.99058 0.86610 1.68120 1.08762 1.22233 1.16549 1.22679 0.89323 0.82892 0.97301 1.70843 1.10974 1.13649 1.27577 1.24301 0.95079 0.87739 0.97097 1.16321 0.80827 0.85907 0.78110 1.90865 1.85930 1.12308 1.48719 1.46019 1.04757 1.11100 1.72512 1.21909 0.79985 0.96710 0.97667 0.88693 1.22614 0.98285 1.01230 0.95208 1.22338 0.94894 1.00482 0.97202 1.22272 0.94385 1.00122 0.94654 0.90264 1.20631 0.87744 0.93735 0.94536 1.42330 1.17982 1.19123 1.58109 1.19201 0.96760 0.96529 1.24499 0.91302 1.24726 0.98649 0.97219 1.00453 1.69652 1.30052 1.22135 1.36447 0.86272 0.81895 0.80647 0.77403 1.21332 1.21734 1.21335 1.22658 0.94225 0.99341 0.99749 1.78961 0.95129 1.06986 1.29058 1.48997 1.07111 1.08778 1.45529 1.22067 0.79217 1.01753 0.94059 0.89855 0.90411 0.89757 0.78932 0.75019 0.91029 0.91642 0.90917 0.91347 0.96286 0.96425 0.78230 0.93543 0.90545 0.90729 0.79751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.11 10.03 36.00 0.36 0.48 16 2 C -0.18 -0.45 5.87 -104.81 -0.61 -1.07 16 3 C 0.21 0.81 10.96 -17.07 -0.19 0.62 16 4 N -0.44 -4.01 10.48 -13.79 -0.14 -4.15 16 5 C 0.44 5.11 8.98 -323.03 -2.90 2.21 16 6 N -0.50 -6.71 10.89 -12.23 -0.13 -6.85 16 7 C 0.24 3.38 7.92 -156.78 -1.24 2.13 16 8 C 0.61 8.75 7.83 -12.20 -0.10 8.65 16 9 O -0.51 -8.59 16.74 5.35 0.09 -8.50 16 10 N -0.69 -8.62 4.99 -53.57 -0.27 -8.88 16 11 C 0.14 1.80 3.23 -66.81 -0.22 1.59 16 12 H 0.10 1.26 7.59 -51.93 -0.39 0.87 16 13 C -0.13 -1.85 6.59 -25.62 -0.17 -2.02 16 14 C -0.11 -1.76 5.97 -25.08 -0.15 -1.91 16 15 C -0.10 -1.53 2.95 -88.59 -0.26 -1.79 16 16 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 17 C 0.16 3.25 5.71 -4.04 -0.02 3.23 16 18 N -0.73 -18.75 5.45 -59.90 -0.33 -19.08 16 19 C -0.24 -6.80 9.99 -15.06 -0.15 -6.96 16 20 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 21 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 22 N -0.93 -28.66 13.06 55.49 0.72 -27.93 16 23 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 C -0.12 -1.55 5.99 -25.03 -0.15 -1.70 16 28 N -0.27 -3.59 12.78 32.02 0.41 -3.19 16 29 N -0.32 -3.32 3.91 -13.80 -0.05 -3.37 16 30 C 0.17 0.84 10.97 -16.54 -0.18 0.66 16 31 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 32 H 0.08 -0.13 8.09 -51.93 -0.42 -0.55 16 33 H 0.08 -0.20 8.10 -51.93 -0.42 -0.62 16 34 H 0.19 -0.11 8.06 -52.49 -0.42 -0.54 16 35 H 0.41 4.67 8.02 -40.82 -0.33 4.34 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.90 7.92 -51.93 -0.41 0.49 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.07 1.12 8.02 -51.92 -0.42 0.71 16 40 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.38 10.31 7.53 -40.82 -0.31 10.00 16 43 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.08 0.92 7.64 -51.93 -0.40 0.53 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.19 0.36 8.06 -52.49 -0.42 -0.07 16 LS Contribution 389.76 15.07 5.87 5.87 Total: -1.00 -37.69 389.76 -11.37 -49.06 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.44 Total: 5.65 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -6.08 Total: 3.61 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: 0.21 Total: -73.45 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.69 -11.37 -49.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755737607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.409 kcal (2) G-P(sol) polarization free energy of solvation -37.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds