Wall clock time and date at job start Wed Apr 1 2020 03:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40176 * 120.36223 * 2 1 4 4 N 1.31258 * 120.35530 * 180.25476 * 3 2 1 5 5 C 1.33995 * 120.87566 * 359.44740 * 4 3 2 6 6 N 1.32503 * 132.33348 * 180.16885 * 5 4 3 7 7 C 1.33469 * 109.74865 * 180.34983 * 6 5 4 8 8 C 1.48133 * 125.32241 * 180.02562 * 7 6 5 9 9 O 1.21521 * 119.99587 * 179.97438 * 8 7 6 10 10 N 1.34773 * 119.99648 * 359.97210 * 8 7 6 11 11 C 1.46504 * 119.99585 * 179.97438 * 10 8 7 12 12 H 1.09002 * 110.01619 * 325.70554 * 11 10 8 13 13 C 1.53871 * 110.03089 * 87.09606 * 11 10 8 14 14 C 1.54265 * 106.60044 * 119.28511 * 13 11 10 15 15 C 1.54882 * 104.19459 * 23.60688 * 14 13 11 16 16 H 1.09003 * 110.75314 * 80.37771 * 15 14 13 17 17 C 1.53000 * 110.75573 * 203.56044 * 15 14 13 18 18 N 1.46511 * 109.47156 * 293.54626 * 17 15 14 19 19 C 1.36932 * 119.99907 * 180.02562 * 18 17 15 20 20 H 1.08007 * 120.00221 * 359.97438 * 19 18 17 21 21 C 1.38806 * 119.99975 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99815 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00075 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47139 * 59.99933 * 23 21 19 25 25 H 1.48505 * 109.46932 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47070 * 299.99413 * 23 21 19 27 27 C 1.54267 * 110.03383 * 204.31285 * 11 10 8 28 28 N 1.31995 * 109.35194 * 359.97438 * 7 6 5 29 29 N 1.36871 * 120.22853 * 0.54765 * 5 4 3 30 30 C 1.35678 * 120.36417 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.47395 * 90.00057 * 1 2 3 32 32 H 1.08998 * 109.47056 * 209.99957 * 1 2 3 33 33 H 1.09001 * 109.47311 * 330.00483 * 1 2 3 34 34 H 1.08002 * 119.81984 * 359.97337 * 3 2 1 35 35 H 0.96991 * 120.00337 * 0.02562 * 10 8 7 36 36 H 1.09001 * 110.03319 * 238.56800 * 13 11 10 37 37 H 1.09005 * 110.03070 * 359.94992 * 13 11 10 38 38 H 1.09002 * 110.48965 * 142.29226 * 14 13 11 39 39 H 1.09008 * 110.48358 * 264.79742 * 14 13 11 40 40 H 1.08994 * 109.47231 * 53.54939 * 17 15 14 41 41 H 1.09003 * 109.47100 * 173.54989 * 17 15 14 42 42 H 0.96995 * 119.99638 * 0.02562 * 18 17 15 43 43 H 0.97002 * 119.99598 * 180.02562 * 22 21 19 44 44 H 1.09007 * 110.48322 * 335.78763 * 27 11 10 45 45 H 1.08996 * 110.48654 * 98.42797 * 27 11 10 46 46 H 1.07996 * 120.48431 * 0.04747 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2155 1.2095 0.0000 4 7 3.5281 1.2093 -0.0050 5 6 4.2156 0.0592 0.0008 6 7 5.5142 -0.2041 0.0007 7 6 5.7065 -1.5248 0.0005 8 6 7.0260 -2.1982 0.0009 9 8 7.0887 -3.4118 0.0012 10 7 8.1567 -1.4648 0.0008 11 6 9.4616 -2.1308 0.0017 12 1 9.4091 -3.0537 0.5794 13 6 9.8983 -2.4366 -1.4417 14 6 11.2196 -1.6747 -1.6732 15 6 11.7981 -1.4766 -0.2502 16 1 12.2982 -2.3823 0.0929 17 6 12.7564 -0.2844 -0.2155 18 7 13.9384 -0.5841 -1.0277 19 6 14.9405 0.3416 -1.1459 20 1 14.8594 1.2928 -0.6407 21 6 16.0601 0.0579 -1.9157 22 7 16.1587 -1.1011 -2.5316 23 14 17.4275 1.3204 -2.0764 24 1 17.9831 1.6221 -0.7327 25 1 18.5025 0.7779 -2.9456 26 1 16.8843 2.5645 -2.6783 27 6 10.5325 -1.1942 0.5982 28 7 4.5372 -2.1371 0.0011 29 7 3.5541 -1.1390 0.0009 30 6 2.1928 -1.1707 0.0005 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6785 2.1465 -0.0004 35 1 8.1066 -0.4962 0.0009 36 1 10.0586 -3.5077 -1.5643 37 1 9.1389 -2.0902 -2.1428 38 1 11.9007 -2.2685 -2.2828 39 1 11.0268 -0.7117 -2.1462 40 1 12.2546 0.5967 -0.6154 41 1 13.0614 -0.0932 0.8133 42 1 14.0110 -1.4382 -1.4816 43 1 16.9414 -1.2995 -3.0693 44 1 10.2286 -0.1525 0.4947 45 1 10.7120 -1.4380 1.6453 46 1 1.6668 -2.1138 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755737607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:55 Heat of formation + Delta-G solvation = 82.406973 kcal Electronic energy + Delta-G solvation = -28339.156082 eV Core-core repulsion = 24265.372533 eV Total energy + Delta-G solvation = -4073.783548 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.19567 -41.32493 -40.05838 -39.13688 -36.53168 -35.90636 -34.96246 -34.09605 -32.92115 -32.12578 -30.17717 -29.57107 -28.18198 -26.60360 -26.11525 -24.87355 -24.01678 -23.94326 -21.96375 -21.47251 -20.72239 -19.91596 -19.20935 -19.06975 -18.41730 -18.04472 -17.51094 -16.86764 -16.64512 -16.55442 -15.96760 -15.75833 -15.23788 -15.13271 -15.05073 -14.64471 -14.54477 -14.38208 -14.21605 -13.79073 -13.63229 -13.48540 -13.23364 -13.06629 -13.01997 -12.82320 -12.71711 -12.68653 -12.21448 -12.06907 -11.88156 -11.73507 -11.62005 -11.58157 -11.50827 -11.44158 -11.14660 -10.88917 -10.88171 -10.30304 -9.92863 -8.95499 -7.92356 -5.20538 -0.81288 -0.59793 0.49170 0.50116 1.48099 1.51492 1.55831 1.57586 1.84057 2.08926 2.22426 2.58196 2.80087 3.16541 3.32906 3.40778 3.53613 3.59422 3.72063 3.88160 3.92181 4.13681 4.16034 4.38095 4.42664 4.48722 4.51441 4.56048 4.65147 4.72260 4.75787 4.80113 4.90943 4.94157 4.95578 4.96638 5.05120 5.07283 5.14997 5.22270 5.33349 5.40914 5.45585 5.51189 5.56811 6.04228 6.21931 6.29985 6.50152 6.80943 7.36329 8.14270 8.37316 9.31071 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.024038 B = 0.001676 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.556515 B =16704.947812 C =17485.667793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.148 4.148 3 C 0.225 3.775 4 N -0.477 5.477 5 C 0.420 3.580 6 N -0.525 5.525 7 C 0.225 3.775 8 C 0.612 3.388 9 O -0.540 6.540 10 N -0.680 5.680 11 C 0.147 3.853 12 H 0.095 0.905 13 C -0.126 4.126 14 C -0.107 4.107 15 C -0.089 4.089 16 H 0.075 0.925 17 C 0.159 3.841 18 N -0.744 5.744 19 C -0.247 4.247 20 H 0.075 0.925 21 C -0.076 4.076 22 N -0.970 5.970 23 Si 0.974 3.026 24 H -0.278 1.278 25 H -0.296 1.296 26 H -0.278 1.278 27 C -0.108 4.108 28 N -0.298 5.298 29 N -0.324 5.324 30 C 0.135 3.865 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.243 0.757 35 H 0.420 0.580 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.374 0.626 43 H 0.250 0.750 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -41.124 3.548 7.440 41.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.155 4.155 3 C 0.041 3.959 4 N -0.193 5.193 5 C 0.061 3.939 6 N -0.261 5.261 7 C -0.058 4.058 8 C 0.392 3.608 9 O -0.415 6.415 10 N -0.331 5.331 11 C 0.044 3.956 12 H 0.113 0.887 13 C -0.165 4.165 14 C -0.145 4.145 15 C -0.108 4.108 16 H 0.093 0.907 17 C 0.033 3.967 18 N -0.387 5.387 19 C -0.379 4.379 20 H 0.093 0.907 21 C -0.269 4.269 22 N -0.621 5.621 23 Si 0.803 3.197 24 H -0.204 1.204 25 H -0.222 1.222 26 H -0.204 1.204 27 C -0.146 4.146 28 N -0.133 5.133 29 N -0.104 5.104 30 C 0.001 3.999 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.126 0.874 34 H 0.259 0.741 35 H 0.258 0.742 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.206 0.794 43 H 0.059 0.941 44 H 0.106 0.894 45 H 0.110 0.890 46 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -39.941 2.926 7.481 40.741 hybrid contribution 0.722 -0.134 -0.580 0.936 sum -39.219 2.792 6.901 39.919 Atomic orbital electron populations 1.20874 0.83296 1.06260 1.05143 1.21247 1.01370 0.90409 1.02425 1.24695 0.86606 1.01579 0.83061 1.68248 1.11005 1.21117 1.18916 1.22870 0.89291 0.84000 0.97767 1.70691 1.12826 1.13443 1.29096 1.24011 0.94888 0.88181 0.98765 1.16425 0.81430 0.85537 0.77378 1.90829 1.86533 1.13607 1.50497 1.45905 1.04222 1.11319 1.71697 1.21788 0.80146 0.96814 0.96886 0.88707 1.22520 0.97023 1.00971 0.95958 1.22236 0.95511 0.99966 0.96750 1.22143 0.94868 0.98221 0.95574 0.90707 1.20796 0.86780 0.95509 0.93590 1.42550 1.19132 1.18302 1.58704 1.19637 0.97386 0.97097 1.23740 0.90681 1.25564 1.01248 0.99251 1.00798 1.69818 1.30579 1.24092 1.37566 0.85206 0.78708 0.78342 0.77473 1.20368 1.22178 1.20441 1.22561 0.92085 0.99990 0.99967 1.78767 0.95666 1.08697 1.30207 1.49016 1.08286 1.07640 1.45470 1.22928 0.77452 1.04294 0.95231 0.88362 0.89235 0.87425 0.74136 0.74223 0.90897 0.91627 0.92950 0.92124 0.96006 0.96032 0.79399 0.94091 0.89407 0.88964 0.77088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.72 10.03 71.24 0.71 1.43 16 2 C -0.15 -0.21 5.87 -19.99 -0.12 -0.33 16 3 C 0.22 0.95 10.96 85.25 0.93 1.89 16 4 N -0.48 -8.02 10.48 -197.53 -2.07 -10.09 16 5 C 0.42 9.86 8.98 261.56 2.35 12.21 16 6 N -0.52 -14.75 10.89 -192.60 -2.10 -16.84 16 7 C 0.23 6.60 7.92 137.40 1.09 7.69 16 8 C 0.61 18.26 7.83 86.87 0.68 18.95 16 9 O -0.54 -19.04 16.74 -3.78 -0.06 -19.10 16 10 N -0.68 -17.09 4.99 -441.69 -2.20 -19.30 16 11 C 0.15 3.73 3.23 45.71 0.15 3.88 16 12 H 0.09 2.49 7.59 -2.39 -0.02 2.47 16 13 C -0.13 -3.50 6.59 31.32 0.21 -3.29 16 14 C -0.11 -3.44 5.97 31.67 0.19 -3.25 16 15 C -0.09 -2.84 2.95 -9.48 -0.03 -2.87 16 16 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 17 C 0.16 6.41 5.71 86.38 0.49 6.91 16 18 N -0.74 -38.70 5.45 -343.43 -1.87 -40.57 16 19 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16 20 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 21 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 22 N -0.97 -60.65 13.06 21.65 0.28 -60.37 16 23 Si 0.97 47.09 29.55 68.60 2.03 49.11 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 26 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 27 C -0.11 -2.62 5.99 31.69 0.19 -2.43 16 28 N -0.30 -8.34 12.78 -52.59 -0.67 -9.01 16 29 N -0.32 -6.62 3.91 -197.58 -0.77 -7.39 16 30 C 0.13 1.12 10.97 83.43 0.92 2.03 16 31 H 0.10 -0.84 8.14 -2.38 -0.02 -0.86 16 32 H 0.09 -0.74 8.09 -2.39 -0.02 -0.76 16 33 H 0.11 -1.16 8.10 -2.39 -0.02 -1.18 16 34 H 0.24 -1.55 8.06 -2.91 -0.02 -1.57 16 35 H 0.42 9.52 8.02 -92.72 -0.74 8.77 16 36 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.06 1.83 7.92 -2.38 -0.02 1.81 16 38 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.06 2.03 8.02 -2.38 -0.02 2.01 16 40 H 0.02 0.88 8.10 -2.39 -0.02 0.86 16 41 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.37 20.68 7.53 -92.71 -0.70 19.98 16 43 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 44 H 0.09 1.98 7.64 -2.38 -0.02 1.96 16 45 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.21 0.36 8.06 -2.91 -0.02 0.34 16 Total: -1.00 -85.88 389.76 1.22 -84.66 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -0.41 Total: 23.40 kcal Atomic # 6 Polarization: 16.43 SS G_CDS: 9.07 Total: 25.50 kcal Atomic # 7 Polarization: -154.17 SS G_CDS: -9.40 Total: -163.57 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.06 Total: -19.10 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.11 kcal Total: -85.88 1.22 -84.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755737607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.071 kcal (2) G-P(sol) polarization free energy of solvation -85.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds