Wall clock time and date at job start Wed Apr 1 2020 02:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00128 * 2 1 4 4 H 1.48500 * 109.46851 * 270.00313 * 3 2 1 5 5 H 1.48504 * 109.46991 * 30.00380 * 3 2 1 6 6 H 1.48500 * 109.47273 * 150.00129 * 3 2 1 7 7 C 1.38814 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00217 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.46492 * 119.99974 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.47063 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.01906 * 306.39124 * 11 10 9 13 13 C 1.53873 * 110.02978 * 67.83329 * 11 10 9 14 14 C 1.54472 * 106.68477 * 119.44182 * 13 11 10 15 15 C 1.54883 * 104.10072 * 23.34360 * 14 13 11 16 16 H 1.08997 * 110.75825 * 80.70436 * 15 14 13 17 17 N 1.46497 * 110.75610 * 203.89529 * 15 14 13 18 18 C 1.34777 * 119.99525 * 271.05963 * 17 15 14 19 19 O 1.21283 * 120.00463 * 0.02562 * 18 17 15 20 20 C 1.50700 * 119.99675 * 179.72583 * 18 17 15 21 21 C 1.50703 * 109.47148 * 180.28037 * 20 18 17 22 22 N 1.32612 * 125.18336 * 269.69443 * 21 20 18 23 23 C 1.32825 * 109.75732 * 179.85817 * 22 21 20 24 24 N 1.33824 * 132.50109 * 180.09102 * 23 22 21 25 25 C 1.31353 * 120.86045 * 180.33402 * 24 23 22 26 26 C 1.40037 * 120.31186 * 359.97438 * 25 24 23 27 27 C 1.35777 * 119.24463 * 0.03805 * 26 25 24 28 28 N 1.35973 * 119.01922 * 359.96508 * 27 26 25 29 29 N 1.31182 * 125.18903 * 89.99709 * 21 20 18 30 30 C 1.54264 * 110.03271 * 184.99746 * 11 10 9 31 31 H 0.97002 * 119.99808 * 359.97438 * 1 2 3 32 32 H 0.97005 * 119.99618 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.47229 * 60.00118 * 10 9 7 34 34 H 1.08997 * 109.47378 * 299.99440 * 10 9 7 35 35 H 1.09001 * 110.03466 * 238.56964 * 13 11 10 36 36 H 1.09008 * 110.03453 * 359.95411 * 13 11 10 37 37 H 1.08997 * 110.40015 * 264.75842 * 14 13 11 38 38 H 1.09004 * 110.65839 * 142.05260 * 14 13 11 39 39 H 0.97000 * 120.00580 * 91.06709 * 17 15 14 40 40 H 1.09009 * 109.47352 * 300.27556 * 20 18 17 41 41 H 1.08998 * 109.47585 * 60.27844 * 20 18 17 42 42 H 1.07997 * 119.83704 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.37709 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.49157 * 179.97438 * 27 26 25 45 45 H 1.08999 * 110.48494 * 98.42912 * 30 11 10 46 46 H 1.09003 * 110.48619 * 335.78969 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0638 -4.8197 -0.0031 12 1 0.3598 -4.7091 0.8216 13 6 0.3062 -4.8650 -1.3417 14 6 0.6222 -6.2338 -1.9841 15 6 1.0214 -7.1299 -0.7856 16 1 0.1363 -7.5023 -0.2699 17 7 1.8683 -8.2407 -1.2273 18 6 1.3065 -9.3997 -1.6243 19 8 0.1000 -9.5230 -1.6163 20 6 2.1774 -10.5403 -2.0846 21 6 1.3096 -11.7081 -2.4773 22 7 0.9197 -12.6786 -1.6620 23 6 0.1636 -13.5459 -2.3255 24 7 -0.4588 -14.6712 -1.9553 25 6 -1.1569 -15.3710 -2.8203 26 6 -1.2618 -14.9479 -4.1511 27 6 -0.6335 -13.8075 -4.5361 28 7 0.0814 -13.1057 -3.6167 29 7 0.8294 -11.9227 -3.6790 30 6 1.8178 -6.1597 0.1219 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 -0.0016 33 1 2.6847 -3.7153 0.8872 34 1 2.6846 -3.7138 -0.8928 35 1 -0.7661 -4.7766 -1.1670 36 1 0.6463 -4.0579 -1.9907 37 1 1.4519 -6.1421 -2.6849 38 1 -0.2586 -6.6362 -2.4846 39 1 2.8332 -8.1421 -1.2340 40 1 2.7689 -10.2223 -2.9433 41 1 2.8435 -10.8386 -1.2750 42 1 -1.6522 -16.2770 -2.5037 43 1 -1.8358 -15.5223 -4.8632 44 1 -0.7006 -13.4628 -5.5574 45 1 1.8076 -6.5082 1.1546 46 1 2.8420 -6.0560 -0.2365 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755749708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:45 Heat of formation + Delta-G solvation = 105.956523 kcal Electronic energy + Delta-G solvation = -28248.370149 eV Core-core repulsion = 24175.607786 eV Total energy + Delta-G solvation = -4072.762363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.34624 -40.17195 -39.21810 -38.00176 -35.05924 -34.82686 -33.49964 -32.80602 -31.18365 -31.07484 -29.91197 -28.72735 -27.45995 -25.22380 -24.47158 -24.15522 -22.22639 -22.18428 -20.65498 -20.61796 -19.12595 -18.89305 -18.57696 -17.60606 -17.04917 -16.83807 -16.71475 -16.21881 -15.61271 -15.36328 -14.99196 -14.58384 -14.33997 -13.99106 -13.84400 -13.43647 -13.38212 -13.19030 -13.10699 -13.07173 -12.77004 -12.55793 -12.44107 -11.99245 -11.80769 -11.43115 -11.07592 -10.84930 -10.75547 -10.58823 -10.50219 -10.49063 -10.35131 -10.29103 -10.09184 -9.90086 -9.85236 -9.63838 -9.27129 -9.10191 -8.83723 -6.87930 -5.73357 -3.01675 -0.09626 0.22308 1.40380 1.99759 2.43204 2.71074 2.91624 3.12173 3.43668 3.45259 3.50179 3.52089 3.74328 3.97288 4.26945 4.45346 4.51140 4.60889 4.72462 4.77475 4.86955 4.89518 4.92849 5.07363 5.28107 5.54180 5.58334 5.63130 5.63704 5.65721 5.72100 5.74472 5.77907 5.87198 5.95407 6.15511 6.18993 6.31125 6.36199 6.46521 6.58939 6.70886 6.86301 6.92949 6.97709 7.32575 7.48603 7.72438 8.03789 8.45796 9.56793 10.16167 10.50712 11.49550 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.038016 B = 0.001518 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.361488 B =18438.449532 C =18632.814181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.161 3.839 11 C -0.096 4.096 12 H 0.074 0.926 13 C -0.115 4.115 14 C -0.131 4.131 15 C 0.139 3.861 16 H 0.095 0.905 17 N -0.718 5.718 18 C 0.522 3.478 19 O -0.530 6.530 20 C -0.054 4.054 21 C 0.300 3.700 22 N -0.511 5.511 23 C 0.442 3.558 24 N -0.454 5.454 25 C 0.205 3.795 26 C -0.226 4.226 27 C 0.174 3.826 28 N -0.326 5.326 29 N -0.320 5.320 30 C -0.120 4.120 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.017 0.983 34 H 0.019 0.981 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.402 0.598 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.191 0.809 43 H 0.175 0.825 44 H 0.183 0.817 45 H 0.070 0.930 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.045 -34.836 -10.292 36.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.377 5.377 10 C 0.033 3.967 11 C -0.115 4.115 12 H 0.093 0.907 13 C -0.153 4.153 14 C -0.170 4.170 15 C 0.035 3.965 16 H 0.113 0.887 17 N -0.369 5.369 18 C 0.306 3.694 19 O -0.406 6.406 20 C -0.097 4.097 21 C 0.018 3.982 22 N -0.243 5.243 23 C 0.082 3.918 24 N -0.168 5.168 25 C 0.019 3.981 26 C -0.251 4.251 27 C 0.036 3.964 28 N -0.105 5.105 29 N -0.152 5.152 30 C -0.158 4.158 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.035 0.965 34 H 0.037 0.963 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.236 0.764 40 H 0.144 0.856 41 H 0.148 0.852 42 H 0.208 0.792 43 H 0.193 0.807 44 H 0.200 0.800 45 H 0.089 0.911 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.837 -34.316 -9.514 35.620 hybrid contribution 0.278 1.035 -0.958 1.438 sum 1.115 -33.281 -10.472 34.907 Atomic orbital electron populations 1.69665 1.05092 1.25574 1.57871 1.24739 0.95514 0.97657 1.03152 0.86196 0.78640 0.83925 0.77472 1.21783 1.21794 1.20802 1.19240 0.91012 0.84267 1.42514 0.91257 1.42374 1.05921 0.99964 1.89393 1.20736 0.93025 0.85354 0.97553 1.21872 0.97814 0.93820 0.98001 0.90711 1.22163 1.00229 0.96325 0.96582 1.22764 1.01334 0.95574 0.97334 1.22103 0.94007 0.85042 0.95361 0.88736 1.45934 1.10578 1.13310 1.67043 1.20008 0.88695 0.83094 0.77579 1.90762 1.14736 1.81972 1.53100 1.20062 0.96249 0.88412 1.04942 1.23482 0.94245 0.94089 0.86365 1.70676 1.18604 1.04724 1.30304 1.22720 0.95686 0.93284 0.80107 1.68023 1.10310 1.03142 1.35313 1.23612 0.89166 0.96771 0.88540 1.21974 1.05574 0.98056 0.99466 1.22195 0.88323 0.89998 0.95856 1.48761 1.32775 1.17968 1.10956 1.78541 1.16675 0.98279 1.21664 1.22605 0.99372 0.94577 0.99271 0.93561 0.78216 0.96548 0.96346 0.91989 0.90300 0.91526 0.91732 0.76354 0.85642 0.85206 0.79189 0.80715 0.79957 0.91128 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.56 13.06 55.49 0.72 -27.83 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.67 5.39 -59.91 -0.32 -19.00 16 10 C 0.16 3.20 5.27 -4.04 -0.02 3.18 16 11 C -0.10 -1.53 2.96 -89.50 -0.27 -1.80 16 12 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 13 C -0.11 -1.83 6.19 -25.50 -0.16 -1.99 16 14 C -0.13 -1.79 6.53 -24.97 -0.16 -1.95 16 15 C 0.14 1.73 3.21 -65.94 -0.21 1.51 16 16 H 0.09 1.35 7.62 -51.93 -0.40 0.96 16 17 N -0.72 -7.17 5.19 -51.88 -0.27 -7.44 16 18 C 0.52 6.27 7.82 -10.98 -0.09 6.19 16 19 O -0.53 -8.98 15.72 5.55 0.09 -8.90 16 20 C -0.05 -0.48 6.33 -29.03 -0.18 -0.66 16 21 C 0.30 3.82 6.59 -157.01 -1.03 2.79 16 22 N -0.51 -7.38 11.25 -11.80 -0.13 -7.51 16 23 C 0.44 5.61 8.99 -323.14 -2.91 2.70 16 24 N -0.45 -4.57 10.48 -13.82 -0.14 -4.72 16 25 C 0.21 0.89 11.27 -17.08 -0.19 0.70 16 26 C -0.23 -0.55 10.06 -39.79 -0.40 -0.95 16 27 C 0.17 0.94 11.32 -16.60 -0.19 0.75 16 28 N -0.33 -3.52 3.91 -13.84 -0.05 -3.57 16 29 N -0.32 -4.07 12.78 32.39 0.41 -3.66 16 30 C -0.12 -1.47 5.98 -25.07 -0.15 -1.62 16 31 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.38 10.32 7.55 -40.82 -0.31 10.02 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.43 7.61 -51.92 -0.40 1.03 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.40 2.66 8.55 -40.82 -0.35 2.31 16 40 H 0.13 0.73 8.14 -51.92 -0.42 0.30 16 41 H 0.13 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.19 -0.04 8.06 -52.49 -0.42 -0.46 16 43 H 0.18 -0.34 8.06 -52.48 -0.42 -0.77 16 44 H 0.18 0.38 8.06 -52.49 -0.42 -0.05 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 0.81 7.73 -51.93 -0.40 0.41 16 LS Contribution 389.31 15.07 5.87 5.87 Total: -1.00 -40.93 389.31 -11.53 -52.46 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.47 Total: 5.28 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -6.21 Total: 1.41 kcal Atomic # 7 Polarization: -73.93 SS G_CDS: 0.21 Total: -73.72 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -40.93 -11.53 -52.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755749708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.418 kcal (2) G-P(sol) polarization free energy of solvation -40.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds