Wall clock time and date at job start Wed Apr 1 2020 03:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.51526 * 2 1 4 4 C 1.53242 * 109.49495 * 239.92796 * 2 1 3 5 5 N 1.47075 * 108.52207 * 186.20984 * 4 2 1 6 6 C 1.34774 * 120.87955 * 231.21022 * 5 4 2 7 7 O 1.21283 * 120.00601 * 359.97438 * 6 5 4 8 8 C 1.50705 * 120.00049 * 179.97438 * 6 5 4 9 9 C 1.52994 * 109.47355 * 179.97438 * 8 6 5 10 10 C 1.50696 * 109.47423 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99678 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00333 * 180.02562 * 10 9 8 13 13 N 1.31506 * 119.99655 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99985 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46891 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46632 * 119.99644 * 14 12 10 17 17 H 1.48495 * 109.46867 * 239.99791 * 14 12 10 18 18 C 1.47080 * 118.23893 * 51.18728 * 5 4 2 19 19 C 1.53238 * 108.52043 * 308.81495 * 18 5 4 20 20 N 1.46901 * 109.34190 * 53.82894 * 19 18 5 21 21 C 1.38505 * 111.00095 * 172.74728 * 20 19 18 22 22 N 1.31818 * 120.28039 * 236.04569 * 21 20 19 23 23 C 1.33748 * 121.29989 * 180.02562 * 22 21 20 24 24 C 1.34748 * 121.43359 * 0.02562 * 23 22 21 25 25 N 1.36980 * 119.84740 * 359.97438 * 24 23 22 26 26 C 1.34772 * 134.71446 * 179.97438 * 25 24 23 27 27 N 1.31082 * 107.59895 * 180.02562 * 26 25 24 28 28 N 1.28795 * 110.14179 * 0.02562 * 27 26 25 29 29 C 1.31884 * 109.30999 * 359.72602 * 28 27 26 30 30 H 1.09003 * 109.47184 * 299.93439 * 1 2 3 31 31 H 1.08998 * 109.47450 * 59.93941 * 1 2 3 32 32 H 1.09008 * 109.47134 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.62367 * 66.49729 * 4 2 1 34 34 H 1.08995 * 109.63084 * 305.92348 * 4 2 1 35 35 H 1.08998 * 109.47394 * 300.00351 * 8 6 5 36 36 H 1.09003 * 109.46662 * 59.99981 * 8 6 5 37 37 H 1.08998 * 109.47538 * 300.00730 * 9 8 6 38 38 H 1.09004 * 109.46777 * 60.00028 * 9 8 6 39 39 H 0.97009 * 120.00074 * 180.02562 * 13 12 10 40 40 H 1.09000 * 109.62864 * 189.10714 * 18 5 4 41 41 H 1.08997 * 109.62524 * 68.52146 * 18 5 4 42 42 H 1.09004 * 109.49528 * 293.87254 * 19 18 5 43 43 H 1.08996 * 109.49356 * 173.79168 * 19 18 5 44 44 H 1.07999 * 119.27945 * 180.02562 * 23 22 21 45 45 H 1.08000 * 120.07837 * 180.02562 * 24 23 22 46 46 H 1.08002 * 126.20492 * 0.03188 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0414 -0.7239 -1.2501 5 7 3.5042 -0.8433 -1.1553 6 6 4.2977 -0.4487 -2.1707 7 8 3.8074 0.0116 -3.1800 8 6 5.7944 -0.5795 -2.0521 9 6 6.4544 -0.0645 -3.3327 10 6 7.9509 -0.1959 -3.2144 11 1 8.3876 -0.6054 -2.3155 12 6 8.7628 0.2076 -4.2533 13 7 8.2310 0.7066 -5.3476 14 14 10.6179 0.0454 -4.1062 15 1 10.9603 -0.5415 -2.7858 16 1 11.1246 -0.8386 -5.1866 17 1 11.2433 1.3865 -4.2297 18 6 4.0782 -1.4041 0.0773 19 6 3.4866 -0.6536 1.2751 20 7 2.0202 -0.6938 1.1985 21 6 1.4486 -0.1676 2.3452 22 7 0.5981 -0.8842 3.0529 23 6 0.0338 -0.3963 4.1630 24 6 0.3102 0.8467 4.6039 25 7 1.1869 1.6372 3.9091 26 6 1.6682 2.8860 4.0679 27 7 2.4929 3.1219 3.0766 28 7 2.5597 2.0956 2.3014 29 6 1.7765 1.1435 2.7699 30 1 -0.3634 0.5128 0.8906 31 1 -0.3634 0.5148 -0.8894 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7776 -0.1505 -2.1388 34 1 1.5958 -1.7170 -1.3062 35 1 6.1441 0.0060 -1.2019 36 1 6.0569 -1.6271 -1.9045 37 1 6.1047 -0.6504 -4.1827 38 1 6.1918 0.9830 -3.4808 39 1 8.8021 0.9902 -6.0787 40 1 5.1611 -1.2805 0.0662 41 1 3.8283 -2.4627 0.1488 42 1 3.8234 0.3830 1.2573 43 1 3.8157 -1.1275 2.1999 44 1 -0.6584 -1.0120 4.7181 45 1 -0.1577 1.2184 5.5034 46 1 1.4197 3.5686 4.8670 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291817091.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:30 Heat of formation + Delta-G solvation = 116.263215 kcal Electronic energy + Delta-G solvation = -30404.640114 eV Core-core repulsion = 26332.324683 eV Total energy + Delta-G solvation = -4072.315431 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.31378 -40.58762 -39.47682 -38.20265 -35.44849 -34.15483 -33.51949 -32.94238 -31.34187 -30.90011 -30.50141 -28.12549 -27.15830 -25.30933 -24.62544 -24.46579 -23.06771 -22.85788 -21.66679 -20.68111 -19.17104 -18.58933 -18.34194 -17.30324 -17.23044 -16.64310 -16.20571 -15.98420 -15.65036 -15.46200 -15.27744 -15.16971 -14.44885 -14.36898 -14.21357 -13.71982 -13.47584 -13.20146 -12.79584 -12.41535 -12.33846 -12.30342 -12.23592 -12.00469 -11.93724 -11.52480 -11.47327 -11.24080 -11.21215 -11.00984 -10.90230 -10.64318 -10.52353 -10.36748 -9.90161 -9.56564 -9.17390 -9.11451 -8.94260 -8.85687 -8.37418 -8.25978 -5.90865 -3.94812 -0.24181 0.50709 1.61543 2.17346 2.68165 2.74635 3.22758 3.28445 3.34166 3.36669 3.43751 3.47175 3.57637 3.90004 4.10265 4.36615 4.46715 4.51732 4.61624 4.70006 4.85435 4.90405 5.08139 5.13366 5.15981 5.24221 5.29571 5.35087 5.44270 5.46314 5.53034 5.59878 5.75203 5.82881 5.88295 6.03885 6.07543 6.26293 6.28046 6.40505 6.48160 6.71767 6.95944 7.20223 7.78056 7.80701 7.90405 7.92876 8.13113 8.44145 8.78414 9.13837 9.68465 11.20203 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.017078 B = 0.002529 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.099635 B =11068.639015 C =11795.987765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.073 3.927 3 H 0.069 0.931 4 C 0.126 3.874 5 N -0.628 5.628 6 C 0.516 3.484 7 O -0.532 6.532 8 C -0.129 4.129 9 C 0.037 3.963 10 C -0.524 4.524 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.890 5.890 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.119 3.881 19 C 0.039 3.961 20 N -0.478 5.478 21 C 0.421 3.579 22 N -0.441 5.441 23 C 0.061 3.939 24 C 0.000 4.000 25 N -0.375 5.375 26 C 0.132 3.868 27 N -0.247 5.247 28 N -0.246 5.246 29 C 0.103 3.897 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.260 0.740 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.189 0.811 45 H 0.181 0.819 46 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.240 -2.283 25.827 33.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 H 0.087 0.913 4 C 0.002 3.998 5 N -0.364 5.364 6 C 0.306 3.694 7 O -0.407 6.407 8 C -0.169 4.169 9 C -0.001 4.001 10 C -0.563 4.563 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.528 5.528 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.004 4.004 19 C -0.088 4.088 20 N -0.201 5.201 21 C 0.162 3.838 22 N -0.153 5.153 23 C -0.078 4.078 24 C -0.123 4.123 25 N -0.057 5.057 26 C -0.152 4.152 27 N -0.088 5.088 28 N -0.095 5.095 29 C -0.154 4.154 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.121 0.879 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.205 0.795 45 H 0.198 0.802 46 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -20.887 -2.437 24.061 31.955 hybrid contribution 0.401 1.033 1.694 2.025 sum -20.486 -1.404 25.755 32.939 Atomic orbital electron populations 1.21834 0.93277 1.03310 1.01753 1.22255 0.95866 0.97085 0.88201 0.91286 1.21588 0.80832 1.00915 0.96428 1.48349 1.06035 1.64845 1.17166 1.21593 0.90515 0.75584 0.81665 1.90659 1.76530 1.43977 1.29514 1.21890 0.88188 1.02594 1.04188 1.18909 0.93903 0.97260 0.90009 1.21254 0.91541 1.41877 1.01614 0.92565 1.25024 0.98668 0.95321 0.95404 1.70010 1.34982 1.42217 1.05638 0.86550 0.85829 0.77685 0.77985 1.19742 1.21061 1.21052 1.21748 0.99190 0.97528 0.81983 1.22776 0.83511 1.02419 1.00115 1.58944 1.08227 1.54089 0.98792 1.19427 0.90449 0.82294 0.91663 1.68158 1.07589 1.34129 1.05472 1.22345 0.99631 0.92425 0.93426 1.22701 0.96234 0.93039 1.00373 1.43901 1.29349 1.12864 1.19545 1.26552 0.99357 0.85356 1.03899 1.74566 1.14403 1.18651 1.01139 1.75000 1.17333 0.96060 1.21114 1.24715 1.00404 1.00266 0.90005 0.93771 0.90853 0.90649 0.88111 0.90779 0.90186 0.90180 0.95817 0.95809 0.93049 0.87911 0.90442 0.90981 0.89464 0.79466 0.80160 0.75194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.93 37.16 0.33 -1.10 16 2 C 0.07 0.89 2.37 -67.59 -0.16 0.73 16 3 H 0.07 1.00 7.50 -51.93 -0.39 0.61 16 4 C 0.13 1.70 5.88 -3.60 -0.02 1.68 16 5 N -0.63 -9.65 3.01 -172.47 -0.52 -10.17 16 6 C 0.52 10.34 7.71 -10.98 -0.08 10.25 16 7 O -0.53 -12.82 15.43 5.55 0.09 -12.74 16 8 C -0.13 -2.68 4.00 -27.88 -0.11 -2.79 16 9 C 0.04 1.01 4.26 -27.89 -0.12 0.89 16 10 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 11 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -27.85 13.29 55.43 0.74 -27.11 16 14 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 18 C 0.12 1.43 6.50 -3.60 -0.02 1.41 16 19 C 0.04 0.45 5.18 -3.70 -0.02 0.43 16 20 N -0.48 -5.46 4.53 -164.84 -0.75 -6.21 16 21 C 0.42 4.54 3.99 -155.02 -0.62 3.92 16 22 N -0.44 -4.05 10.47 -12.43 -0.13 -4.18 16 23 C 0.06 0.32 11.06 -17.95 -0.20 0.12 16 24 C 0.00 0.00 11.06 -16.49 -0.18 -0.18 16 25 N -0.37 -3.04 2.95 -63.99 -0.19 -3.23 16 26 C 0.13 1.04 12.97 -90.13 -1.17 -0.13 16 27 N -0.25 -3.10 12.21 29.65 0.36 -2.73 16 28 N -0.25 -3.41 10.49 31.27 0.33 -3.08 16 29 C 0.10 1.17 6.85 -155.99 -1.07 0.10 16 30 H 0.04 0.45 7.05 -51.93 -0.37 0.08 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 33 H 0.10 1.51 7.06 -51.93 -0.37 1.14 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.54 7.66 -51.93 -0.40 1.14 16 36 H 0.08 1.51 8.00 -51.93 -0.42 1.09 16 37 H 0.02 0.71 8.10 -51.93 -0.42 0.28 16 38 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.10 1.19 6.02 -51.93 -0.31 0.88 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.97 6.65 -51.93 -0.35 0.63 16 43 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 44 H 0.19 0.27 8.06 -52.49 -0.42 -0.15 16 45 H 0.18 -0.02 8.06 -52.49 -0.42 -0.44 16 46 H 0.23 0.59 8.06 -52.49 -0.42 0.17 16 LS Contribution 375.60 15.07 5.66 5.66 Total: -1.00 -38.90 375.60 -9.64 -48.54 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -6.36 Total: -3.23 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -3.85 Total: 1.51 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -0.16 Total: -56.71 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -38.90 -9.64 -48.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291817091.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.803 kcal (2) G-P(sol) polarization free energy of solvation -38.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds