Wall clock time and date at job start Wed Apr 1 2020 02:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34775 * 125.87896 * 2 1 4 4 C 1.36502 * 107.60273 * 180.10923 * 3 2 1 5 5 C 1.48362 * 126.23068 * 179.87298 * 4 3 2 6 6 C 1.39883 * 120.10744 * 184.69196 * 5 4 3 7 7 C 1.38347 * 117.95303 * 179.77097 * 6 5 4 8 8 C 1.39520 * 118.00460 * 0.48508 * 7 6 5 9 9 N 1.39484 * 120.03640 * 179.78533 * 8 7 6 10 10 C 1.34778 * 119.99856 * 185.32648 * 9 8 7 11 11 O 1.21577 * 119.99983 * 354.69092 * 10 9 8 12 12 N 1.34779 * 119.99899 * 174.41361 * 10 9 8 13 13 C 1.46501 * 120.00152 * 180.27512 * 12 10 9 14 14 C 1.53003 * 109.46954 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47160 * 299.99912 * 14 13 12 16 16 C 1.52995 * 109.47090 * 60.00381 * 14 13 12 17 17 C 1.50697 * 109.46767 * 180.02562 * 14 13 12 18 18 H 1.08001 * 120.00214 * 3.66573 * 17 14 13 19 19 C 1.37872 * 120.00099 * 183.66471 * 17 14 13 20 20 N 1.31517 * 119.99868 * 354.07749 * 19 17 14 21 21 Si 1.86804 * 120.00298 * 174.08415 * 19 17 14 22 22 H 1.48493 * 109.47411 * 94.99449 * 21 19 17 23 23 H 1.48500 * 109.46957 * 214.99486 * 21 19 17 24 24 H 1.48497 * 109.46848 * 334.99191 * 21 19 17 25 25 N 1.32393 * 119.92426 * 359.50447 * 8 7 6 26 26 N 1.28338 * 122.21158 * 0.25321 * 25 8 7 27 27 C 1.40889 * 107.53037 * 359.61103 * 4 3 2 28 28 N 1.30645 * 108.09044 * 0.23873 * 27 4 3 29 29 H 1.08994 * 109.47120 * 270.30500 * 1 2 3 30 30 H 1.09005 * 109.47051 * 30.30660 * 1 2 3 31 31 H 1.09003 * 109.46872 * 150.30476 * 1 2 3 32 32 H 1.08001 * 126.20267 * 359.97438 * 3 2 1 33 33 H 1.07997 * 121.02097 * 0.02562 * 6 5 4 34 34 H 1.08004 * 120.99804 * 180.26790 * 7 6 5 35 35 H 0.97003 * 120.00306 * 5.32325 * 9 8 7 36 36 H 0.97008 * 119.99466 * 0.27936 * 12 10 9 37 37 H 1.08997 * 109.46952 * 300.00584 * 13 12 10 38 38 H 1.08997 * 109.46485 * 60.00330 * 13 12 10 39 39 H 1.08999 * 109.47063 * 64.87243 * 15 14 13 40 40 H 1.08995 * 109.47044 * 184.87499 * 15 14 13 41 41 H 1.09002 * 109.47329 * 304.87361 * 15 14 13 42 42 H 1.08991 * 109.47582 * 59.99402 * 16 14 13 43 43 H 1.09003 * 109.47090 * 179.97438 * 16 14 13 44 44 H 1.09007 * 109.47144 * 299.99757 * 16 14 13 45 45 H 0.97008 * 120.00220 * 179.97438 * 20 19 17 46 46 H 1.08006 * 125.95606 * 180.27538 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2550 1.0920 0.0000 4 6 3.5511 0.6640 -0.0025 5 6 4.7590 1.5254 -0.0060 6 6 6.0304 0.9507 -0.1073 7 6 7.1256 1.7959 -0.1112 8 6 6.8949 3.1677 -0.0036 9 7 7.9687 4.0580 0.0014 10 6 7.7539 5.3716 0.2130 11 8 6.6178 5.7950 0.3032 12 7 8.7986 6.2150 0.3300 13 6 8.5653 7.6419 0.5660 14 6 9.9079 8.3698 0.6580 15 6 10.7249 7.7887 1.8137 16 6 10.6771 8.1887 -0.6521 17 6 9.6679 9.8375 0.9013 18 1 8.6617 10.2043 1.0413 19 6 10.7327 10.7122 0.9454 20 7 11.9638 10.2527 0.8918 21 14 10.4269 12.5500 1.0813 22 1 10.4898 12.9582 2.5076 23 1 11.4635 13.2826 0.3106 24 1 9.0843 12.8702 0.5335 25 7 5.6554 3.6237 0.0883 26 7 4.6372 2.8425 0.0872 27 6 3.5328 -0.7448 0.0051 28 7 2.2858 -1.1343 0.0066 29 1 -0.3633 0.0055 1.0276 30 1 -0.3633 0.8873 -0.5186 31 1 -0.3633 -0.8927 -0.5091 32 1 1.9227 2.1197 -0.0004 33 1 6.1529 -0.1195 -0.1843 34 1 8.1294 1.4053 -0.1916 35 1 8.8700 3.7317 -0.1473 36 1 9.7051 5.8771 0.2580 37 1 7.9835 8.0560 -0.2575 38 1 8.0169 7.7709 1.4991 39 1 10.9724 6.7495 1.5973 40 1 11.6432 8.3633 1.9344 41 1 10.1412 7.8393 2.7329 42 1 10.0951 8.6026 -1.4754 43 1 11.6334 8.7076 -0.5867 44 1 10.8507 7.1270 -0.8277 45 1 12.7131 10.8681 0.9224 46 1 4.3988 -1.3903 0.0096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459529683.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:37 Heat of formation + Delta-G solvation = 122.439855 kcal Electronic energy + Delta-G solvation = -28507.593053 eV Core-core repulsion = 24435.545461 eV Total energy + Delta-G solvation = -4072.047592 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.68919 -40.98248 -39.49638 -36.65322 -35.15397 -34.12866 -33.32680 -32.95578 -31.87681 -30.76419 -29.38294 -27.23110 -25.78777 -25.73796 -25.19218 -24.57635 -23.79349 -21.46570 -21.10976 -20.64449 -18.88119 -18.59289 -17.87142 -17.71467 -16.68508 -15.92244 -15.80058 -15.75539 -15.59306 -14.91143 -14.70279 -14.56919 -14.51655 -14.01169 -13.64625 -13.38280 -13.28515 -13.23182 -12.94122 -12.89178 -12.85759 -12.20001 -11.59683 -11.58639 -11.28003 -11.18321 -11.07356 -10.84882 -10.68756 -10.44041 -10.40076 -10.19814 -9.89685 -9.85490 -9.64727 -9.42417 -9.35209 -9.26092 -8.83251 -8.46493 -8.33056 -8.02112 -6.02934 -4.11945 0.67786 0.78929 1.58939 2.08039 2.47101 2.56589 3.28616 3.36255 3.41477 3.45508 3.86712 3.92008 4.04939 4.27159 4.41286 4.45954 4.51226 4.60692 4.71343 4.74205 4.76576 4.91892 4.97814 5.23963 5.24468 5.34773 5.51903 5.83967 5.89014 6.15359 6.16855 6.34645 6.47060 6.48529 6.55289 6.74096 6.80750 6.85003 7.01435 7.01730 7.08749 7.25848 7.35786 7.53851 7.69763 8.00589 8.09995 8.24206 8.39285 8.80173 8.88381 8.97188 9.53557 10.98465 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.028712 B = 0.001740 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.954856 B =16089.065811 C =16855.899347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.374 5.374 3 C 0.105 3.895 4 C -0.196 4.196 5 C 0.116 3.884 6 C -0.087 4.087 7 C -0.151 4.151 8 C 0.315 3.685 9 N -0.666 5.666 10 C 0.684 3.316 11 O -0.533 6.533 12 N -0.727 5.727 13 C 0.150 3.850 14 C 0.055 3.945 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.504 4.504 18 H 0.059 0.941 19 C 0.066 3.934 20 N -0.885 5.885 21 Si 0.892 3.108 22 H -0.282 1.282 23 H -0.286 1.286 24 H -0.273 1.273 25 N -0.218 5.218 26 N -0.217 5.217 27 C 0.071 3.929 28 N -0.298 5.298 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.187 0.813 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.412 0.588 36 H 0.394 0.606 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.005 0.995 40 H 0.086 0.914 41 H 0.025 0.975 42 H 0.027 0.973 43 H 0.085 0.915 44 H 0.006 0.994 45 H 0.260 0.740 46 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.457 -24.172 -3.053 27.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.154 5.154 3 C -0.045 4.045 4 C -0.210 4.210 5 C -0.031 4.031 6 C -0.116 4.116 7 C -0.183 4.183 8 C 0.076 3.924 9 N -0.316 5.316 10 C 0.383 3.617 11 O -0.404 6.404 12 N -0.382 5.382 13 C 0.027 3.973 14 C 0.054 3.946 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.543 4.543 18 H 0.077 0.923 19 C -0.135 4.135 20 N -0.524 5.524 21 Si 0.720 3.280 22 H -0.208 1.208 23 H -0.212 1.212 24 H -0.198 1.198 25 N -0.066 5.066 26 N -0.061 5.061 27 C -0.117 4.117 28 N -0.118 5.118 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.204 0.796 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.249 0.751 36 H 0.229 0.771 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.024 0.976 40 H 0.105 0.895 41 H 0.044 0.956 42 H 0.046 0.954 43 H 0.104 0.896 44 H 0.025 0.975 45 H 0.070 0.930 46 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -15.212 -23.190 -2.799 27.875 hybrid contribution 2.424 0.121 -0.155 2.432 sum -12.787 -23.070 -2.954 26.542 Atomic orbital electron populations 1.21949 0.73621 1.04844 1.03766 1.48444 1.07025 1.03767 1.56143 1.22772 0.90391 0.93745 0.97558 1.18268 0.91024 0.92096 1.19571 1.20457 0.91791 0.92067 0.98793 1.21995 0.91272 1.01408 0.96972 1.21757 1.01318 0.91532 1.03686 1.19969 0.89733 0.87800 0.94944 1.42761 1.08320 1.06652 1.73867 1.16176 0.86175 0.79979 0.79358 1.91053 1.20428 1.74857 1.54097 1.45559 1.07113 1.09622 1.75887 1.21682 1.00230 0.75331 1.00027 1.18386 0.88845 0.94412 0.92930 1.21843 1.02928 0.96245 0.97757 1.21812 1.03449 0.96348 0.97212 1.20974 0.93371 0.90892 1.49064 0.92318 1.24873 0.95069 0.98742 0.94830 1.69813 0.97891 1.34178 1.50509 0.86568 0.78093 0.85327 0.77977 1.20826 1.21229 1.19796 1.73703 0.94256 1.26682 1.11977 1.73288 1.22543 1.01862 1.08407 1.23924 0.95355 0.93600 0.98810 1.77262 1.01540 1.08305 1.24673 0.90392 0.89029 0.89074 0.79583 0.83251 0.83127 0.75121 0.77125 0.92587 0.92645 0.97589 0.89512 0.95567 0.95357 0.89599 0.97534 0.93033 0.79529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.41 11.46 59.85 0.69 1.10 16 2 N -0.37 -3.15 4.00 -67.88 -0.27 -3.42 16 3 C 0.10 0.97 11.22 -16.89 -0.19 0.78 16 4 C -0.20 -1.98 6.06 -105.35 -0.64 -2.62 16 5 C 0.12 1.35 6.84 -82.75 -0.57 0.78 16 6 C -0.09 -0.76 9.70 -38.93 -0.38 -1.13 16 7 C -0.15 -1.38 10.05 -39.06 -0.39 -1.77 16 8 C 0.31 4.35 7.51 -154.41 -1.16 3.19 16 9 N -0.67 -8.81 5.40 -15.66 -0.08 -8.90 16 10 C 0.68 12.25 8.52 -86.91 -0.74 11.51 16 11 O -0.53 -11.95 14.63 5.30 0.08 -11.87 16 12 N -0.73 -12.67 4.99 -65.23 -0.33 -12.99 16 13 C 0.15 3.17 4.50 -4.04 -0.02 3.15 16 14 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 15 C -0.13 -2.87 8.09 37.16 0.30 -2.57 16 16 C -0.13 -2.87 8.04 37.16 0.30 -2.57 16 17 C -0.50 -13.10 8.01 -34.44 -0.28 -13.38 16 18 H 0.06 1.55 7.75 -52.49 -0.41 1.14 16 19 C 0.07 1.72 5.12 -17.82 -0.09 1.63 16 20 N -0.89 -23.31 9.36 55.43 0.52 -22.79 16 21 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 N -0.22 -3.80 9.06 31.31 0.28 -3.51 16 26 N -0.22 -3.34 11.23 33.38 0.37 -2.96 16 27 C 0.07 0.61 11.43 -17.05 -0.19 0.42 16 28 N -0.30 -2.94 12.54 30.81 0.39 -2.56 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.19 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.15 0.69 7.16 -52.49 -0.38 0.32 16 34 H 0.15 0.77 8.06 -52.48 -0.42 0.35 16 35 H 0.41 3.62 8.73 -40.82 -0.36 3.27 16 36 H 0.39 5.93 6.22 -40.82 -0.25 5.67 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.01 0.10 7.00 -51.93 -0.36 -0.26 16 40 H 0.09 2.14 6.04 -51.93 -0.31 1.82 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 2.10 6.02 -51.93 -0.31 1.79 16 44 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 45 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 46 H 0.19 0.92 7.41 -52.48 -0.39 0.53 16 LS Contribution 383.76 15.07 5.78 5.78 Total: -1.00 -35.25 383.76 -7.78 -43.04 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -6.07 Total: 4.89 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -3.44 Total: -0.32 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: 0.88 Total: -57.14 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.87 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.25 -7.78 -43.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459529683.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.477 kcal (2) G-P(sol) polarization free energy of solvation -35.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds