Wall clock time and date at job start Wed Apr 1 2020 03:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47409 * 2 1 4 4 N 1.46504 * 109.47009 * 240.00164 * 2 1 3 5 5 C 1.34777 * 119.99854 * 84.99752 * 4 2 1 6 6 O 1.21593 * 119.99953 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00097 * 180.27545 * 5 4 2 8 8 C 1.46500 * 120.00431 * 179.72742 * 7 5 4 9 9 C 1.52999 * 109.47528 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47306 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47245 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00090 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00007 * 179.97438 * 11 10 9 14 14 N 1.31522 * 120.00198 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00191 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47109 * 60.00141 * 15 13 11 17 17 H 1.48496 * 109.47265 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47190 * 300.00363 * 15 13 11 19 19 C 1.50700 * 109.47460 * 120.00542 * 2 1 3 20 20 C 1.38319 * 119.88138 * 79.72034 * 19 2 1 21 21 C 1.38027 * 120.11413 * 179.76995 * 20 19 2 22 22 C 1.39297 * 119.88412 * 0.48717 * 21 20 19 23 23 C 1.48463 * 120.12165 * 179.78799 * 22 21 20 24 24 N 1.34045 * 126.68053 * 179.97438 * 23 22 21 25 25 N 1.28978 * 107.27522 * 179.97438 * 24 23 22 26 26 N 1.28737 * 108.93760 * 0.02562 * 25 24 23 27 27 H 0.97006 * 125.33647 * 179.97438 * 26 25 24 28 28 N 1.28864 * 109.31986 * 359.75237 * 26 25 24 29 29 C 1.39305 * 119.76604 * 359.76603 * 22 21 20 30 30 C 1.38030 * 119.87634 * 0.02562 * 29 22 21 31 31 H 1.09007 * 109.46569 * 299.99572 * 1 2 3 32 32 H 1.09001 * 109.47135 * 59.99282 * 1 2 3 33 33 H 1.08999 * 109.47409 * 179.97438 * 1 2 3 34 34 H 0.97000 * 120.00410 * 265.00478 * 4 2 1 35 35 H 0.97000 * 120.00112 * 359.73180 * 7 5 4 36 36 H 1.09009 * 109.46712 * 300.00517 * 8 7 5 37 37 H 1.08998 * 109.47207 * 59.99494 * 8 7 5 38 38 H 1.09003 * 109.46366 * 299.99640 * 9 8 7 39 39 H 1.08993 * 109.47533 * 59.99613 * 9 8 7 40 40 H 1.09000 * 109.46924 * 300.00089 * 10 9 8 41 41 H 1.09007 * 109.47220 * 59.99210 * 10 9 8 42 42 H 0.96995 * 120.00094 * 179.97438 * 14 13 11 43 43 H 1.08001 * 119.93889 * 0.02562 * 20 19 2 44 44 H 1.07998 * 120.05616 * 180.24741 * 21 20 19 45 45 H 1.07996 * 120.06151 * 179.97438 * 29 22 21 46 46 H 1.08005 * 119.93466 * 179.97438 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1469 -0.0182 -2.3572 6 8 1.8581 1.1617 -2.4116 7 7 2.5909 -0.6548 -3.4590 8 6 2.7250 0.0746 -4.7224 9 6 3.2435 -0.8731 -5.8059 10 6 3.3843 -0.1111 -7.1252 11 6 3.8956 -1.0444 -8.1923 12 1 4.0993 -2.0778 -7.9535 13 6 4.1022 -0.5793 -9.4736 14 7 3.8536 0.6790 -9.7646 15 14 4.7353 -1.7363 -10.7965 16 1 3.7785 -2.8583 -10.9721 17 1 4.8720 -0.9967 -12.0769 18 1 6.0593 -2.2736 -10.3920 19 6 2.0324 -0.7105 1.2304 20 6 2.0603 -2.0930 1.2646 21 6 2.5240 -2.7486 2.3873 22 6 2.9547 -2.0157 3.4908 23 6 3.4500 -2.7156 4.7028 24 7 3.8938 -2.1451 5.8317 25 7 4.2288 -3.0965 6.6356 26 7 4.0139 -4.2267 6.0578 27 1 4.1832 -5.0980 6.4492 28 7 3.5344 -4.0191 4.8799 29 6 2.9195 -0.6236 3.4529 30 6 2.4580 0.0220 2.3236 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2489 -1.6318 -1.1528 35 1 2.8215 -1.5960 -3.4156 36 1 1.7530 0.4686 -5.0195 37 1 3.4269 0.8985 -4.5936 38 1 4.2154 -1.2672 -5.5090 39 1 2.5414 -1.6967 -5.9347 40 1 2.4126 0.2835 -7.4223 41 1 4.0867 0.7123 -6.9961 42 1 3.9993 1.0062 -10.6660 43 1 1.7226 -2.6603 0.4099 44 1 2.5492 -3.8281 2.4115 45 1 3.2519 -0.0507 4.3059 46 1 2.4299 1.1013 2.2934 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736119862.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:09 Heat of formation + Delta-G solvation = 102.604301 kcal Electronic energy + Delta-G solvation = -27614.035497 eV Core-core repulsion = 23541.127771 eV Total energy + Delta-G solvation = -4072.907726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.92134 -40.44569 -39.40356 -36.34479 -35.18551 -34.71944 -33.81407 -33.31111 -31.87144 -31.46412 -30.72479 -29.41955 -26.60041 -25.39488 -25.14641 -23.44220 -23.13865 -22.52067 -21.19013 -20.70165 -20.27083 -19.64609 -18.36715 -17.60594 -17.34354 -16.62455 -16.17628 -15.70397 -15.46398 -15.19845 -14.75056 -14.44921 -14.34463 -14.24192 -14.05735 -13.83599 -13.73729 -13.58943 -13.08376 -12.82456 -12.56013 -12.26639 -12.11496 -11.83871 -11.80902 -11.73727 -11.66800 -11.45201 -11.30013 -11.19096 -10.87705 -10.70776 -10.61294 -10.10500 -9.84347 -9.43718 -9.42596 -9.28559 -9.12760 -8.99330 -8.61208 -8.35809 -6.00615 -4.03814 0.21097 0.71446 0.93414 1.76409 1.86321 2.78966 3.19853 3.31979 3.32543 3.37441 3.39163 3.39875 3.71430 4.19801 4.35721 4.45591 4.46634 4.51913 4.76694 4.91088 4.95955 5.03575 5.08988 5.16404 5.34312 5.34994 5.49811 5.55108 5.65395 5.73790 5.82378 5.83053 5.90966 5.96318 6.00859 6.08789 6.20249 6.39956 6.46453 6.54242 6.63871 6.81223 7.03583 7.07120 7.64801 7.66872 7.78040 7.98199 8.14447 8.39102 8.75318 9.02658 9.60226 11.10571 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.017922 B = 0.001504 C = 0.001420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.960858 B =18608.481827 C =19714.318486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.199 3.801 3 H 0.100 0.900 4 N -0.747 5.747 5 C 0.702 3.298 6 O -0.591 6.591 7 N -0.741 5.741 8 C 0.135 3.865 9 C -0.120 4.120 10 C 0.024 3.976 11 C -0.523 4.523 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.893 5.893 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.065 4.065 20 C -0.116 4.116 21 C -0.074 4.074 22 C -0.023 4.023 23 C 0.221 3.779 24 N -0.268 5.268 25 N -0.049 5.049 26 N -0.227 5.227 27 H 0.476 0.524 28 N -0.294 5.294 29 C -0.070 4.070 30 C -0.108 4.108 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.393 0.607 35 H 0.393 0.607 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.262 0.738 43 H 0.130 0.870 44 H 0.134 0.866 45 H 0.138 0.862 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.839 -9.938 33.776 35.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.094 3.906 3 H 0.118 0.882 4 N -0.404 5.404 5 C 0.402 3.598 6 O -0.469 6.469 7 N -0.395 5.395 8 C 0.012 3.988 9 C -0.159 4.159 10 C -0.014 4.014 11 C -0.562 4.562 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.532 5.532 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.067 4.067 20 C -0.134 4.134 21 C -0.094 4.094 22 C -0.027 4.027 23 C -0.059 4.059 24 N -0.141 5.141 25 N -0.044 5.044 26 N -0.073 5.073 27 H 0.330 0.670 28 N -0.145 5.145 29 C -0.091 4.091 30 C -0.127 4.127 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.228 0.772 35 H 0.226 0.774 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.156 0.844 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.850 -8.717 34.166 35.470 hybrid contribution 0.565 -2.175 -0.881 2.413 sum -3.285 -10.892 33.285 35.176 Atomic orbital electron populations 1.22200 0.94096 1.02450 1.03031 1.19633 0.94112 0.96653 0.80250 0.88175 1.45269 1.72706 1.13550 1.08879 1.15988 0.78431 0.85159 0.80254 1.90921 1.57077 1.14335 1.84608 1.45389 1.70674 1.13845 1.09625 1.21512 1.01312 0.95241 0.80737 1.21890 0.99674 0.98198 0.96092 1.19024 0.97517 0.95490 0.89333 1.21169 1.44229 0.96340 0.94435 0.92722 1.25023 0.95616 0.95099 0.98672 1.69957 1.48690 1.14184 1.20392 0.86646 0.79383 0.80851 0.81019 1.20273 1.21270 1.20283 1.20212 0.96992 0.93957 0.95491 1.20867 1.00571 0.93750 0.98261 1.21122 0.96265 1.00362 0.91673 1.17235 1.03577 0.92567 0.89294 1.23736 1.00476 0.86068 0.95599 1.76091 1.14927 1.22589 1.00506 1.78934 1.15749 0.88313 1.21394 1.47747 1.39872 1.11334 1.08384 0.66957 1.74932 1.18609 1.18850 1.02139 1.21173 0.96840 0.92494 0.98552 1.20985 0.98748 1.00590 0.92350 0.91486 0.91137 0.92331 0.77185 0.77351 0.91936 0.91938 0.92788 0.92781 0.96236 0.96234 0.92881 0.85181 0.84796 0.84401 0.84619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.46 37.16 0.35 -1.01 16 2 C 0.20 1.81 2.77 -69.08 -0.19 1.62 16 3 H 0.10 1.07 7.43 -51.93 -0.39 0.69 16 4 N -0.75 -7.55 5.03 -59.81 -0.30 -7.85 16 5 C 0.70 10.25 8.53 -86.92 -0.74 9.51 16 6 O -0.59 -11.12 16.01 5.28 0.08 -11.03 16 7 N -0.74 -10.44 5.56 -65.22 -0.36 -10.80 16 8 C 0.14 2.38 5.67 -4.04 -0.02 2.35 16 9 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 10 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 11 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 12 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 15 Si 0.89 21.43 29.54 -169.99 -5.02 16.40 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 C -0.06 -0.49 4.96 -104.57 -0.52 -1.00 16 20 C -0.12 -0.76 9.03 -39.63 -0.36 -1.12 16 21 C -0.07 -0.51 9.70 -39.27 -0.38 -0.89 16 22 C -0.02 -0.19 5.88 -104.89 -0.62 -0.80 16 23 C 0.22 1.91 7.94 -156.30 -1.24 0.67 16 24 N -0.27 -2.52 12.23 32.16 0.39 -2.13 16 25 N -0.05 -0.38 13.47 60.35 0.81 0.44 16 26 N -0.23 -1.13 7.90 60.35 0.48 -0.66 16 27 H 0.48 0.09 8.96 -340.37 -3.05 -2.96 16 28 N -0.29 -2.14 12.08 32.17 0.39 -1.75 16 29 C -0.07 -0.52 9.70 -39.26 -0.38 -0.90 16 30 C -0.11 -0.76 9.65 -39.63 -0.38 -1.14 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.39 2.93 6.89 -40.82 -0.28 2.65 16 35 H 0.39 4.36 8.49 -40.82 -0.35 4.02 16 36 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.13 0.64 6.92 -52.49 -0.36 0.27 16 44 H 0.13 0.78 7.88 -52.49 -0.41 0.36 16 45 H 0.14 0.91 7.89 -52.49 -0.41 0.50 16 46 H 0.14 0.76 8.03 -52.48 -0.42 0.34 16 LS Contribution 396.35 15.07 5.97 5.97 Total: -1.00 -35.89 396.35 -11.01 -46.90 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -9.02 Total: -1.41 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -5.17 Total: -8.07 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 2.14 Total: -48.77 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.89 -11.01 -46.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736119862.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.505 kcal (2) G-P(sol) polarization free energy of solvation -35.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds