Wall clock time and date at job start Wed Apr 1 2020 03:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46395 * 2 1 4 4 C 1.53038 * 109.46068 * 119.97612 * 2 1 3 5 5 C 1.53192 * 109.31637 * 181.36952 * 4 2 1 6 6 N 1.46925 * 108.77403 * 305.36289 * 5 4 2 7 7 C 1.36934 * 120.62852 * 233.63175 * 6 5 4 8 8 H 1.08008 * 120.00032 * 151.81304 * 7 6 5 9 9 C 1.38813 * 120.00112 * 331.80624 * 7 6 5 10 10 N 1.31618 * 120.00004 * 343.09132 * 9 7 6 11 11 Si 1.86806 * 119.99953 * 163.09021 * 9 7 6 12 12 H 1.48494 * 109.47083 * 60.00061 * 11 9 7 13 13 H 1.48500 * 109.46851 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47024 * 300.00112 * 11 9 7 15 15 C 1.46931 * 118.73767 * 53.60584 * 6 5 4 16 16 C 1.53191 * 108.89519 * 306.31855 * 15 6 5 17 17 H 1.08996 * 109.49374 * 174.65514 * 16 15 6 18 18 N 1.46494 * 109.49954 * 294.75778 * 16 15 6 19 19 C 1.34775 * 120.00176 * 274.99901 * 18 16 15 20 20 O 1.21285 * 119.99511 * 359.97438 * 19 18 16 21 21 C 1.50690 * 120.00454 * 180.02562 * 19 18 16 22 22 C 1.50705 * 109.47622 * 180.02562 * 21 19 18 23 23 N 1.32610 * 125.18068 * 269.69874 * 22 21 19 24 24 C 1.32831 * 109.75684 * 179.87948 * 23 22 21 25 25 N 1.33812 * 132.50383 * 180.10407 * 24 23 22 26 26 C 1.31357 * 120.86371 * 180.28538 * 25 24 23 27 27 C 1.40037 * 120.31266 * 0.02562 * 26 25 24 28 28 C 1.35779 * 119.24068 * 359.97438 * 27 26 25 29 29 N 1.35986 * 119.02107 * 0.02562 * 28 27 26 30 30 N 1.31176 * 125.18934 * 89.99256 * 22 21 19 31 31 H 1.08999 * 109.46919 * 300.02875 * 1 2 3 32 32 H 1.09007 * 109.46847 * 60.02237 * 1 2 3 33 33 H 1.08995 * 109.47589 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.49984 * 61.41088 * 4 2 1 35 35 H 1.09009 * 109.52151 * 301.33906 * 4 2 1 36 36 H 1.09000 * 109.58292 * 185.57446 * 5 4 2 37 37 H 1.09000 * 109.70209 * 65.22130 * 5 4 2 38 38 H 0.96996 * 119.99787 * 179.97438 * 10 9 7 39 39 H 1.08993 * 109.58327 * 66.18334 * 15 6 5 40 40 H 1.09004 * 109.58177 * 186.46065 * 15 6 5 41 41 H 0.97003 * 120.00261 * 95.00035 * 18 16 15 42 42 H 1.09004 * 109.46870 * 299.99929 * 21 19 18 43 43 H 1.08997 * 109.47295 * 59.99948 * 21 19 18 44 44 H 1.08000 * 119.84014 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.38557 * 179.97438 * 27 26 25 46 46 H 1.08001 * 120.49330 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 3.5714 -0.6892 1.2640 6 7 4.0676 -1.2495 -0.0004 7 6 4.9751 -2.2749 -0.0005 8 1 5.0023 -2.9720 -0.8250 9 6 5.8604 -2.4184 1.0591 10 7 6.0658 -1.4148 1.8856 11 14 6.7601 -4.0358 1.3120 12 1 7.5834 -4.3369 0.1134 13 1 7.6397 -3.9318 2.5039 14 1 5.7720 -5.1246 1.5201 15 6 3.5710 -0.6890 -1.2646 16 6 2.0395 -0.7213 -1.2538 17 1 1.6590 -0.2218 -2.1448 18 7 1.5797 -2.1121 -1.2380 19 6 1.4569 -2.7945 -2.3937 20 8 1.7266 -2.2568 -3.4469 21 6 0.9834 -4.2250 -2.3775 22 6 0.9344 -4.7540 -3.7878 23 7 -0.1179 -4.6889 -4.5921 24 6 0.1762 -5.2447 -5.7621 25 7 -0.5334 -5.4217 -6.8828 26 6 -0.0059 -6.0191 -7.9270 27 6 1.3145 -6.4834 -7.8835 28 6 2.0422 -6.3083 -6.7507 29 7 1.4673 -5.6860 -5.6869 30 7 1.9243 -5.3540 -4.4049 31 1 -0.3633 0.5143 0.8897 32 1 -0.3633 0.5135 -0.8903 33 1 -0.3634 -1.0276 0.0005 34 1 1.6975 -1.7557 1.2382 35 1 1.6574 -0.2214 2.1401 36 1 3.9415 -1.2852 2.0981 37 1 3.9166 0.3394 1.3683 38 1 6.6841 -1.5152 2.6261 39 1 3.9142 0.3403 -1.3676 40 1 3.9432 -1.2836 -2.0989 41 1 1.3637 -2.5419 -0.3957 42 1 1.6724 -4.8290 -1.7870 43 1 -0.0120 -4.2733 -1.9362 44 1 -0.5938 -6.1536 -8.8230 45 1 1.7492 -6.9752 -8.7412 46 1 3.0625 -6.6581 -6.6951 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968647771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:26 Heat of formation + Delta-G solvation = 125.120226 kcal Electronic energy + Delta-G solvation = -30276.231716 eV Core-core repulsion = 26204.300353 eV Total energy + Delta-G solvation = -4071.931363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.06848 -39.82921 -38.97827 -37.53627 -34.78948 -34.20216 -32.83037 -32.41709 -31.07661 -30.87925 -29.95591 -28.75328 -27.17294 -24.97331 -24.17391 -23.91885 -22.45340 -21.62097 -21.08475 -20.22176 -18.70346 -18.61765 -18.30405 -17.32473 -16.67611 -16.56580 -16.30333 -15.46385 -15.01552 -14.78181 -14.72308 -14.03423 -13.89019 -13.72280 -13.62385 -13.40442 -13.35434 -13.01511 -12.85969 -12.78940 -12.51112 -12.17024 -12.05344 -11.96289 -11.58451 -11.38569 -11.13181 -10.81743 -10.73944 -10.36140 -10.31196 -10.25386 -10.23413 -9.96554 -9.92349 -9.63502 -9.45800 -9.41942 -9.00611 -8.63283 -8.36073 -6.63251 -5.78058 -3.20032 0.14418 0.48591 1.68745 2.31853 2.95844 3.03546 3.18861 3.38107 3.43745 3.45028 3.58451 3.81276 3.97340 4.28718 4.50049 4.50458 4.74101 4.96992 5.07379 5.21773 5.25733 5.31954 5.33795 5.37147 5.43796 5.53675 5.57928 5.92000 5.92653 5.96555 6.04139 6.05423 6.07774 6.21851 6.26995 6.42976 6.44731 6.60211 6.67025 6.82222 6.86742 7.09098 7.17408 7.33431 7.64687 7.77546 7.81300 7.94546 8.46171 8.61657 9.22899 9.85610 10.42648 11.30227 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012109 B = 0.003119 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.738395 B = 8975.129695 C =10720.900058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.077 0.923 4 C -0.136 4.136 5 C 0.168 3.832 6 N -0.586 5.586 7 C -0.247 4.247 8 H 0.063 0.937 9 C 0.002 3.998 10 N -0.903 5.903 11 Si 0.900 3.100 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.284 1.284 15 C 0.135 3.865 16 C 0.137 3.863 17 H 0.078 0.922 18 N -0.695 5.695 19 C 0.524 3.476 20 O -0.543 6.543 21 C -0.056 4.056 22 C 0.306 3.694 23 N -0.512 5.512 24 C 0.439 3.561 25 N -0.455 5.455 26 C 0.203 3.797 27 C -0.230 4.230 28 C 0.177 3.823 29 N -0.326 5.326 30 N -0.315 5.315 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.018 0.982 38 H 0.253 0.747 39 H 0.025 0.975 40 H 0.058 0.942 41 H 0.400 0.600 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.189 0.811 45 H 0.174 0.826 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.711 -8.931 -14.046 20.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.095 0.905 4 C -0.176 4.176 5 C 0.042 3.958 6 N -0.309 5.309 7 C -0.376 4.376 8 H 0.080 0.920 9 C -0.196 4.196 10 N -0.548 5.548 11 Si 0.730 3.270 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.211 1.211 15 C 0.007 3.993 16 C 0.031 3.969 17 H 0.096 0.904 18 N -0.346 5.346 19 C 0.308 3.692 20 O -0.421 6.421 21 C -0.099 4.099 22 C 0.025 3.975 23 N -0.244 5.244 24 C 0.079 3.921 25 N -0.169 5.169 26 C 0.016 3.984 27 C -0.255 4.255 28 C 0.039 3.961 29 N -0.106 5.106 30 N -0.146 5.146 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.036 0.964 38 H 0.063 0.937 39 H 0.043 0.957 40 H 0.077 0.923 41 H 0.236 0.764 42 H 0.144 0.856 43 H 0.143 0.857 44 H 0.206 0.794 45 H 0.191 0.809 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -12.878 -8.044 -13.854 20.554 hybrid contribution 1.365 -1.395 0.268 1.969 sum -11.513 -9.439 -13.586 20.155 Atomic orbital electron populations 1.21851 0.95932 1.01420 1.00962 1.21371 0.94620 0.99840 0.95408 0.90461 1.22258 1.00878 0.98946 0.95495 1.20808 0.87202 0.97381 0.90381 1.43983 1.48237 1.39532 0.99129 1.19106 1.09580 1.02641 1.06308 0.91969 1.25020 0.97158 0.97314 1.00098 1.70019 1.37591 1.28950 1.18239 0.86404 0.79393 0.83909 0.77276 1.20989 1.21703 1.21080 1.21286 0.90426 0.96955 0.90629 1.21616 0.97154 0.80586 0.97549 0.90436 1.45767 1.66680 1.14009 1.08178 1.19800 0.78061 0.86913 0.84432 1.90709 1.50574 1.69901 1.30918 1.20089 1.06057 0.95455 0.88293 1.23554 0.85590 0.91912 0.96463 1.70674 1.28286 1.26021 0.99375 1.22720 0.80616 0.94629 0.94162 1.67991 1.33965 1.17458 0.97473 1.23554 0.92499 0.86898 0.95428 1.21919 0.96584 1.07938 0.99085 1.22195 1.00335 0.90054 0.83564 1.48810 1.13082 1.37134 1.11533 1.78644 1.20661 1.26963 0.88319 0.93014 0.93249 0.92972 0.92958 0.92874 0.89432 0.96372 0.93658 0.95712 0.92350 0.76380 0.85595 0.85695 0.79396 0.80907 0.80032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.05 37.16 0.34 -1.53 16 2 C -0.09 -1.46 2.48 -90.41 -0.22 -1.68 16 3 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 4 C -0.14 -2.34 5.20 -26.61 -0.14 -2.48 16 5 C 0.17 3.79 5.30 -3.71 -0.02 3.77 16 6 N -0.59 -14.16 2.91 -172.32 -0.50 -14.66 16 7 C -0.25 -6.66 9.58 -15.06 -0.14 -6.80 16 8 H 0.06 1.71 7.89 -52.48 -0.41 1.30 16 9 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 10 N -0.90 -25.83 11.20 55.49 0.62 -25.21 16 11 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 C 0.13 2.91 6.10 -3.71 -0.02 2.89 16 16 C 0.14 2.42 2.26 -67.65 -0.15 2.27 16 17 H 0.08 1.41 7.58 -51.93 -0.39 1.02 16 18 N -0.70 -11.42 4.26 -53.54 -0.23 -11.65 16 19 C 0.52 9.18 7.79 -10.99 -0.09 9.10 16 20 O -0.54 -11.70 15.70 5.55 0.09 -11.61 16 21 C -0.06 -0.81 6.33 -29.04 -0.18 -0.99 16 22 C 0.31 5.17 6.59 -157.01 -1.03 4.13 16 23 N -0.51 -9.01 11.25 -11.80 -0.13 -9.14 16 24 C 0.44 6.82 8.99 -323.15 -2.91 3.92 16 25 N -0.45 -5.64 10.48 -13.82 -0.14 -5.79 16 26 C 0.20 1.34 11.27 -17.08 -0.19 1.14 16 27 C -0.23 -1.14 10.06 -39.79 -0.40 -1.54 16 28 C 0.18 1.48 11.32 -16.59 -0.19 1.29 16 29 N -0.33 -4.60 3.91 -13.84 -0.05 -4.65 16 30 N -0.32 -5.33 12.78 32.39 0.41 -4.92 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.65 7.54 -51.93 -0.39 0.25 16 34 H 0.05 0.87 6.41 -51.93 -0.33 0.53 16 35 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 36 H 0.09 2.23 6.06 -51.93 -0.31 1.91 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 1.38 7.93 -51.93 -0.41 0.97 16 41 H 0.40 5.93 6.64 -40.82 -0.27 5.66 16 42 H 0.13 1.59 8.14 -51.93 -0.42 1.17 16 43 H 0.13 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.19 0.34 8.06 -52.49 -0.42 -0.08 16 45 H 0.17 0.07 8.06 -52.49 -0.42 -0.35 16 46 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 378.31 15.07 5.70 5.70 Total: -1.00 -37.90 378.31 -11.03 -48.93 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.32 Total: 2.95 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: -5.44 Total: 13.47 kcal Atomic # 7 Polarization: -75.99 SS G_CDS: -0.03 Total: -76.01 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.90 -11.03 -48.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968647771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.046 kcal (2) G-P(sol) polarization free energy of solvation -37.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds