Wall clock time and date at job start Wed Apr 1 2020 03:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.58272 * 2 1 4 4 C 1.53192 * 109.58805 * 120.28463 * 2 1 3 5 5 H 1.08997 * 109.52499 * 54.59281 * 4 2 1 6 6 N 1.46506 * 109.49362 * 294.51571 * 4 2 1 7 7 C 1.34783 * 119.99518 * 155.16568 * 6 4 2 8 8 O 1.21544 * 120.00089 * 359.97438 * 7 6 4 9 9 C 1.47877 * 119.99547 * 179.97438 * 7 6 4 10 10 C 1.39455 * 121.11696 * 359.97438 * 9 7 6 11 11 C 1.38611 * 119.37400 * 180.02562 * 10 9 7 12 12 N 1.31583 * 121.63807 * 0.02562 * 11 10 9 13 13 C 1.32210 * 121.86698 * 359.97438 * 12 11 10 14 14 C 1.40864 * 121.11244 * 179.71640 * 9 7 6 15 15 N 1.34397 * 135.14242 * 0.76035 * 14 9 7 16 16 N 1.28693 * 109.15037 * 179.46046 * 15 14 9 17 17 N 1.28788 * 111.75847 * 359.73294 * 16 15 14 18 18 C 1.46502 * 125.86802 * 180.02562 * 17 16 15 19 19 C 1.53036 * 109.31190 * 174.56426 * 4 2 1 20 20 C 1.53038 * 109.52822 * 298.63992 * 19 4 2 21 21 C 1.53166 * 109.32787 * 61.37169 * 20 19 4 22 22 N 1.46922 * 108.76751 * 305.35837 * 21 20 19 23 23 C 1.36938 * 120.63186 * 233.63238 * 22 21 20 24 24 H 1.08001 * 120.00334 * 150.17204 * 23 22 21 25 25 C 1.38814 * 119.99750 * 330.16628 * 23 22 21 26 26 N 1.31627 * 119.99987 * 344.48217 * 25 23 22 27 27 Si 1.86799 * 119.99883 * 164.47608 * 25 23 22 28 28 H 1.48489 * 109.47406 * 0.02562 * 27 25 23 29 29 H 1.48509 * 109.46874 * 120.00550 * 27 25 23 30 30 H 1.48499 * 109.47144 * 240.00045 * 27 25 23 31 31 H 1.09001 * 109.46667 * 299.71712 * 1 2 3 32 32 H 1.08997 * 109.47239 * 59.71802 * 1 2 3 33 33 H 1.09004 * 109.47090 * 179.72024 * 1 2 3 34 34 H 0.96992 * 120.00015 * 335.16173 * 6 4 2 35 35 H 1.08001 * 120.30946 * 359.97438 * 10 9 7 36 36 H 1.07998 * 119.18115 * 180.02562 * 11 10 9 37 37 H 1.09002 * 109.46456 * 269.97297 * 18 17 16 38 38 H 1.08999 * 109.47171 * 29.96724 * 18 17 16 39 39 H 1.08993 * 109.47008 * 149.97108 * 18 17 16 40 40 H 1.08998 * 109.46231 * 58.65099 * 19 4 2 41 41 H 1.09000 * 109.45997 * 178.62592 * 19 4 2 42 42 H 1.08999 * 109.49855 * 181.31095 * 20 19 4 43 43 H 1.09009 * 109.49761 * 301.40916 * 20 19 4 44 44 H 1.08991 * 109.59171 * 185.57204 * 21 20 19 45 45 H 1.08998 * 109.70913 * 65.21192 * 21 20 19 46 46 H 0.96996 * 119.99377 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 1.2463 5 1 1.6050 -1.7246 1.2927 6 7 1.6676 0.0281 2.4436 7 6 1.5474 -0.6027 3.6286 8 8 1.7505 -1.7987 3.7038 9 6 1.1685 0.1603 4.8373 10 6 0.9306 1.5332 4.7777 11 6 0.5780 2.2129 5.9331 12 7 0.4617 1.5951 7.0891 13 6 0.6739 0.2958 7.2106 14 6 1.0304 -0.4761 6.0864 15 7 1.1769 -1.7341 6.5359 16 7 0.9318 -1.7623 7.7990 17 7 0.6293 -0.5956 8.2528 18 6 0.2961 -0.2751 9.6429 19 6 3.5679 -0.8434 1.1728 20 6 3.9601 -1.6607 -0.0601 21 6 3.4685 -0.9436 -1.3211 22 7 2.0254 -0.6991 -1.1936 23 6 1.1584 -1.1152 -2.1685 24 1 0.1446 -1.3841 -1.9107 25 6 1.5825 -1.1913 -3.4880 26 7 2.6922 -0.5882 -3.8585 27 14 0.5783 -2.1498 -4.7380 28 1 -0.6165 -2.7293 -4.0735 29 1 0.1450 -1.2389 -5.8280 30 1 1.4079 -3.2424 -5.3064 31 1 -0.3633 0.5094 0.8925 32 1 -0.3633 0.5182 -0.8874 33 1 -0.3633 -1.0277 -0.0050 34 1 1.5053 0.9824 2.3835 35 1 1.0212 2.0619 3.8403 36 1 0.3941 3.2759 5.8833 37 1 -0.7790 -0.3762 9.7913 38 1 0.8208 -0.9596 10.3094 39 1 0.5985 0.7489 9.8622 40 1 4.0046 0.1528 1.1020 41 1 3.9381 -1.3393 2.0701 42 1 5.0446 -1.7624 -0.0993 43 1 3.5034 -2.6488 -0.0020 44 1 3.6575 -1.5683 -2.1940 45 1 3.9917 0.0062 -1.4314 46 1 2.9887 -0.6417 -4.7805 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993706613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:16 Heat of formation + Delta-G solvation = 126.704928 kcal Electronic energy + Delta-G solvation = -30184.487519 eV Core-core repulsion = 26112.624874 eV Total energy + Delta-G solvation = -4071.862645 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.63756 -40.17008 -39.00086 -37.60168 -35.31587 -34.42793 -33.01288 -32.34287 -31.57057 -31.10347 -29.22135 -28.31064 -26.47488 -25.65937 -24.98034 -23.99697 -23.09571 -21.63069 -20.73292 -20.33513 -19.49879 -19.03208 -17.97507 -17.63557 -17.28928 -16.40866 -15.76005 -15.55815 -15.10154 -14.96909 -14.79536 -14.14245 -14.07929 -13.76513 -13.75275 -13.51518 -13.43068 -13.32593 -13.02701 -12.80899 -12.55725 -12.51257 -11.79215 -11.73425 -11.55555 -11.37554 -11.12472 -10.93732 -10.76821 -10.57745 -10.39753 -10.28807 -10.11184 -10.03376 -9.84078 -9.61201 -9.56040 -9.37616 -9.25820 -8.71920 -8.46839 -6.68378 -5.80917 -3.25609 -0.22242 0.54862 1.57498 1.95120 2.72168 3.01259 3.33490 3.36741 3.45335 3.46605 3.47397 3.90324 4.02631 4.24784 4.26188 4.48981 4.56447 4.59196 4.85317 4.92671 5.17369 5.23672 5.28530 5.36067 5.45169 5.50881 5.59753 5.77033 5.80405 5.95390 6.01604 6.05540 6.19237 6.31478 6.38315 6.51806 6.58929 6.68424 6.74625 6.83725 6.96174 7.04546 7.13316 7.39159 7.60990 7.66212 7.81395 7.95547 8.28178 8.43846 9.18836 9.81317 10.37627 11.27775 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.023730 B = 0.002402 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.677955 B =11652.344421 C =11806.163078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.168 3.832 3 H 0.028 0.972 4 C 0.131 3.869 5 H 0.089 0.911 6 N -0.708 5.708 7 C 0.547 3.453 8 O -0.501 6.501 9 C -0.003 4.003 10 C -0.144 4.144 11 C 0.159 3.841 12 N -0.460 5.460 13 C 0.209 3.791 14 C 0.002 3.998 15 N -0.212 5.212 16 N -0.007 5.007 17 N -0.312 5.312 18 C 0.092 3.908 19 C -0.117 4.117 20 C -0.140 4.140 21 C 0.169 3.831 22 N -0.581 5.581 23 C -0.252 4.252 24 H 0.071 0.929 25 C 0.004 3.996 26 N -0.901 5.901 27 Si 0.901 3.099 28 H -0.277 1.277 29 H -0.291 1.291 30 H -0.289 1.289 31 H 0.038 0.962 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.395 0.605 35 H 0.159 0.841 36 H 0.182 0.818 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.087 0.913 45 H 0.020 0.980 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.516 8.696 23.456 25.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.061 3.939 3 H 0.046 0.954 4 C 0.026 3.974 5 H 0.107 0.893 6 N -0.360 5.360 7 C 0.330 3.670 8 O -0.374 6.374 9 C -0.020 4.020 10 C -0.168 4.168 11 C -0.013 4.013 12 N -0.174 5.174 13 C -0.033 4.033 14 C -0.127 4.127 15 N -0.086 5.086 16 N 0.011 4.989 17 N -0.114 5.114 18 C -0.049 4.049 19 C -0.156 4.156 20 C -0.180 4.180 21 C 0.044 3.956 22 N -0.305 5.305 23 C -0.381 4.381 24 H 0.088 0.912 25 C -0.194 4.194 26 N -0.545 5.545 27 Si 0.731 3.269 28 H -0.202 1.202 29 H -0.218 1.218 30 H -0.215 1.215 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.230 0.770 35 H 0.177 0.823 36 H 0.199 0.801 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.105 0.895 45 H 0.038 0.962 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.349 6.689 24.550 25.665 hybrid contribution -0.445 0.731 -1.430 1.666 sum -3.795 7.420 23.121 24.577 Atomic orbital electron populations 1.21830 0.95621 1.01842 1.00216 1.20554 0.93239 0.93567 0.86586 0.95406 1.21893 0.95281 0.96983 0.83282 0.89282 1.46051 1.69630 1.12247 1.08080 1.17871 0.79080 0.87323 0.82684 1.90879 1.47901 1.13761 1.84903 1.19839 0.97087 0.93242 0.91824 1.22431 1.00000 0.92975 1.01412 1.22816 0.92782 1.00326 0.85408 1.66268 1.15858 1.06424 1.28823 1.19794 1.04668 0.91062 0.87824 1.20142 1.05915 0.92125 0.94532 1.75592 1.16146 1.17189 0.99653 1.78290 1.10623 1.03217 1.06778 1.47040 1.50184 1.04490 1.09653 1.22277 1.03352 1.04172 0.75089 1.21768 0.95164 1.00156 0.98518 1.22179 0.99296 0.99765 0.96748 1.20828 0.83065 0.97242 0.94464 1.44032 1.03130 1.65088 1.18208 1.19196 0.95276 1.37658 0.85976 0.91167 1.25089 0.97904 0.99450 0.96986 1.70038 1.24113 1.43667 1.16724 0.86245 0.79651 0.79610 0.81402 1.20208 1.21762 1.21550 0.94316 0.91683 0.92593 0.77030 0.82342 0.80106 0.89093 0.87780 0.87965 0.92667 0.93060 0.92940 0.92420 0.89470 0.96200 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.85 37.16 0.29 -2.15 16 2 C 0.17 3.24 3.03 -67.60 -0.20 3.03 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 4 C 0.13 2.30 2.00 -67.81 -0.14 2.16 16 5 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 6 N -0.71 -9.84 4.53 -54.62 -0.25 -10.08 16 7 C 0.55 8.53 7.76 -12.31 -0.10 8.44 16 8 O -0.50 -10.06 15.93 5.33 0.08 -9.98 16 9 C 0.00 -0.04 5.92 -104.51 -0.62 -0.66 16 10 C -0.14 -1.15 9.61 -38.99 -0.37 -1.53 16 11 C 0.16 1.11 11.14 -17.52 -0.20 0.91 16 12 N -0.46 -4.46 10.35 -12.39 -0.13 -4.59 16 13 C 0.21 2.49 8.08 -156.21 -1.26 1.23 16 14 C 0.00 0.04 6.97 -84.72 -0.59 -0.55 16 15 N -0.21 -3.50 11.92 32.23 0.38 -3.12 16 16 N -0.01 -0.10 13.07 60.35 0.79 0.69 16 17 N -0.31 -3.35 3.80 -67.23 -0.26 -3.60 16 18 C 0.09 0.45 11.41 59.85 0.68 1.14 16 19 C -0.12 -2.07 5.46 -26.69 -0.15 -2.22 16 20 C -0.14 -2.73 6.08 -26.63 -0.16 -2.90 16 21 C 0.17 3.93 5.28 -3.73 -0.02 3.91 16 22 N -0.58 -13.82 2.99 -164.79 -0.49 -14.31 16 23 C -0.25 -6.57 8.59 -15.06 -0.13 -6.70 16 24 H 0.07 1.81 6.24 -52.49 -0.33 1.48 16 25 C 0.00 0.12 4.94 -17.43 -0.09 0.04 16 26 N -0.90 -25.42 11.23 55.49 0.62 -24.79 16 27 Si 0.90 21.36 29.58 -169.99 -5.03 16.33 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 31 H 0.04 0.55 7.78 -51.93 -0.40 0.14 16 32 H 0.06 1.23 7.67 -51.93 -0.40 0.83 16 33 H 0.05 1.07 7.41 -51.93 -0.38 0.68 16 34 H 0.39 4.09 6.75 -40.82 -0.28 3.81 16 35 H 0.16 0.73 6.53 -52.49 -0.34 0.39 16 36 H 0.18 0.47 8.06 -52.49 -0.42 0.04 16 37 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 44 H 0.09 2.28 6.14 -51.93 -0.32 1.96 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.25 6.92 8.31 -40.82 -0.34 6.59 16 LS Contribution 374.58 15.07 5.64 5.64 Total: -1.00 -35.39 374.58 -7.88 -43.26 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -6.21 Total: 0.40 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -3.05 Total: 4.14 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: 0.67 Total: -59.80 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.39 -7.88 -43.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993706613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.969 kcal (2) G-P(sol) polarization free energy of solvation -35.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds