Wall clock time and date at job start Wed Apr 1 2020 03:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.58523 * 2 1 4 4 C 1.53190 * 109.58856 * 120.28277 * 2 1 3 5 5 H 1.08999 * 109.49803 * 294.37282 * 4 2 1 6 6 N 1.46501 * 109.52393 * 54.45534 * 4 2 1 7 7 C 1.34765 * 120.00098 * 204.85247 * 6 4 2 8 8 O 1.21283 * 120.00423 * 359.97438 * 7 6 4 9 9 C 1.50706 * 120.00189 * 180.02562 * 7 6 4 10 10 C 1.50697 * 109.46949 * 180.02562 * 9 7 6 11 11 N 1.32611 * 125.18945 * 90.02509 * 10 9 7 12 12 C 1.32822 * 109.75925 * 179.97438 * 11 10 9 13 13 N 1.33823 * 132.50472 * 180.02562 * 12 11 10 14 14 C 1.31356 * 120.86106 * 179.97438 * 13 12 11 15 15 C 1.40041 * 120.31643 * 359.96512 * 14 13 12 16 16 C 1.35781 * 119.23929 * 0.02562 * 15 14 13 17 17 N 1.35979 * 119.01816 * 359.97438 * 16 15 14 18 18 N 1.31181 * 125.18044 * 269.71330 * 10 9 7 19 19 C 1.53044 * 109.31150 * 174.42306 * 4 2 1 20 20 C 1.53046 * 109.53659 * 298.63727 * 19 4 2 21 21 C 1.53190 * 109.31379 * 61.36628 * 20 19 4 22 22 N 1.46925 * 108.77445 * 305.36383 * 21 20 19 23 23 C 1.36938 * 120.63208 * 233.58808 * 22 21 20 24 24 H 1.08004 * 120.00148 * 150.19334 * 23 22 21 25 25 C 1.38814 * 119.99642 * 330.19072 * 23 22 21 26 26 N 1.31612 * 120.00059 * 344.48010 * 25 23 22 27 27 Si 1.86805 * 119.99699 * 164.48132 * 25 23 22 28 28 H 1.48497 * 109.47058 * 90.00035 * 27 25 23 29 29 H 1.48498 * 109.46909 * 209.99890 * 27 25 23 30 30 H 1.48503 * 109.46985 * 329.99850 * 27 25 23 31 31 H 1.09007 * 109.46976 * 299.71461 * 1 2 3 32 32 H 1.09000 * 109.47296 * 59.70958 * 1 2 3 33 33 H 1.08998 * 109.47110 * 179.72217 * 1 2 3 34 34 H 0.97004 * 119.99652 * 24.85406 * 6 4 2 35 35 H 1.09001 * 109.46418 * 300.00321 * 9 7 6 36 36 H 1.08996 * 109.47128 * 59.99534 * 9 7 6 37 37 H 1.07995 * 119.83762 * 179.97438 * 14 13 12 38 38 H 1.07998 * 120.37962 * 179.97438 * 15 14 13 39 39 H 1.07999 * 120.49046 * 180.02562 * 16 15 14 40 40 H 1.08995 * 109.45894 * 178.61986 * 19 4 2 41 41 H 1.08996 * 109.44877 * 58.65118 * 19 4 2 42 42 H 1.09001 * 109.49662 * 181.31677 * 20 19 4 43 43 H 1.09000 * 109.49346 * 301.41406 * 20 19 4 44 44 H 1.08993 * 109.58629 * 65.15126 * 21 20 19 45 45 H 1.08999 * 109.58593 * 185.57749 * 21 20 19 46 46 H 0.97005 * 120.00165 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 1.2463 5 1 1.7661 -0.1641 2.1370 6 7 1.4515 -2.0663 1.3105 7 6 1.3316 -2.6939 2.4970 8 8 1.7143 -2.1509 3.5118 9 6 0.7231 -4.0710 2.5630 10 6 0.7050 -4.5442 3.9937 11 7 -0.2858 -4.3445 4.8522 12 6 0.0187 -4.8903 6.0242 13 7 -0.6386 -4.9587 7.1878 14 6 -0.1116 -5.5693 8.2245 15 6 1.1534 -6.1623 8.1278 16 6 1.8278 -6.0981 6.9511 17 7 1.2549 -5.4588 5.8965 18 7 1.6646 -5.2214 4.5779 19 6 3.5676 -0.8464 1.1711 20 6 3.9570 -1.6657 -0.0616 21 6 3.4651 -0.9485 -1.3227 22 7 2.0226 -0.7010 -1.1937 23 6 1.1537 -1.1153 -2.1676 24 1 0.1395 -1.3818 -1.9088 25 6 1.5764 -1.1928 -3.4875 26 7 2.6871 -0.5925 -3.8591 27 14 0.5687 -2.1492 -4.7363 28 1 -0.4250 -1.2443 -5.3679 29 1 1.4689 -2.7015 -5.7802 30 1 -0.1389 -3.2620 -4.0535 31 1 -0.3633 0.5094 0.8926 32 1 -0.3634 0.5183 -0.8874 33 1 -0.3633 -1.0276 -0.0050 34 1 1.1458 -2.5008 0.4989 35 1 -0.2965 -4.0363 2.1792 36 1 1.3151 -4.7592 1.9597 37 1 -0.6565 -5.6143 9.1559 38 1 1.5879 -6.6642 8.9797 39 1 2.8044 -6.5488 6.8539 40 1 3.9379 -1.3422 2.0684 41 1 4.0060 0.1489 1.0990 42 1 5.0413 -1.7696 -0.1017 43 1 3.4983 -2.6527 -0.0020 44 1 3.9903 0.0003 -1.4318 45 1 3.6518 -1.5744 -2.1953 46 1 2.9827 -0.6469 -4.7814 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994428367.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:35 Heat of formation + Delta-G solvation = 126.879203 kcal Electronic energy + Delta-G solvation = -30188.001463 eV Core-core repulsion = 26116.146375 eV Total energy + Delta-G solvation = -4071.855088 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.13395 -39.86607 -39.02311 -37.55264 -34.85567 -33.93052 -32.74799 -32.31493 -31.67328 -30.94614 -29.98988 -28.83439 -26.22792 -25.06834 -24.95692 -24.09951 -22.45220 -21.52738 -20.78341 -20.11724 -18.74173 -18.68406 -18.36686 -17.28096 -16.64548 -16.48137 -16.37370 -15.41329 -15.15094 -14.99207 -14.82338 -14.01224 -13.85764 -13.78699 -13.66601 -13.48978 -13.14521 -12.99677 -12.89588 -12.81694 -12.58556 -12.23350 -12.10229 -11.84132 -11.25033 -11.22194 -10.98661 -10.69066 -10.62487 -10.51456 -10.37746 -10.30134 -10.12349 -10.02020 -9.99774 -9.66953 -9.49353 -9.29982 -9.07298 -8.56187 -8.45570 -6.67868 -5.82482 -3.27939 0.08159 0.41631 1.61331 2.25146 2.89923 2.96151 3.13277 3.34129 3.42046 3.42341 3.53496 3.76229 3.90242 4.23164 4.44195 4.44384 4.67389 4.90481 5.08767 5.20663 5.27512 5.31487 5.32692 5.47570 5.58751 5.62122 5.75532 5.85296 5.96449 5.97563 6.00601 6.13459 6.24029 6.34162 6.44175 6.53543 6.67358 6.68105 6.78741 6.94590 6.98294 7.10529 7.11632 7.37043 7.64986 7.71513 7.77152 7.97117 8.41057 8.57960 9.17023 9.80061 10.37709 11.25534 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.019648 B = 0.002471 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.756335 B =11326.889773 C =11697.475704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.159 3.841 3 H 0.039 0.961 4 C 0.136 3.864 5 H 0.076 0.924 6 N -0.696 5.696 7 C 0.520 3.480 8 O -0.547 6.547 9 C -0.057 4.057 10 C 0.308 3.692 11 N -0.510 5.510 12 C 0.440 3.560 13 N -0.453 5.453 14 C 0.203 3.797 15 C -0.229 4.229 16 C 0.175 3.825 17 N -0.327 5.327 18 N -0.321 5.321 19 C -0.121 4.121 20 C -0.139 4.139 21 C 0.172 3.828 22 N -0.586 5.586 23 C -0.256 4.256 24 H 0.071 0.929 25 C 0.006 3.994 26 N -0.899 5.899 27 Si 0.900 3.100 28 H -0.288 1.288 29 H -0.291 1.291 30 H -0.279 1.279 31 H 0.039 0.961 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.410 0.590 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.190 0.810 38 H 0.174 0.826 39 H 0.182 0.818 40 H 0.049 0.951 41 H 0.062 0.938 42 H 0.046 0.954 43 H 0.053 0.947 44 H 0.018 0.982 45 H 0.085 0.915 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.330 -12.116 21.469 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.052 3.948 3 H 0.057 0.943 4 C 0.030 3.970 5 H 0.094 0.906 6 N -0.348 5.348 7 C 0.304 3.696 8 O -0.425 6.425 9 C -0.100 4.100 10 C 0.026 3.974 11 N -0.241 5.241 12 C 0.080 3.920 13 N -0.167 5.167 14 C 0.016 3.984 15 C -0.254 4.254 16 C 0.037 3.963 17 N -0.106 5.106 18 N -0.152 5.152 19 C -0.160 4.160 20 C -0.179 4.179 21 C 0.046 3.954 22 N -0.309 5.309 23 C -0.386 4.386 24 H 0.088 0.912 25 C -0.193 4.193 26 N -0.543 5.543 27 Si 0.729 3.271 28 H -0.215 1.215 29 H -0.217 1.217 30 H -0.204 1.204 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.247 0.753 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.206 0.794 38 H 0.191 0.809 39 H 0.199 0.801 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.036 0.964 45 H 0.104 0.896 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.492 -11.197 21.206 24.027 hybrid contribution 0.336 -1.089 -0.832 1.411 sum -1.156 -12.287 20.375 23.821 Atomic orbital electron populations 1.21785 0.95537 1.01537 1.00469 1.20724 0.93435 0.93885 0.86759 0.94317 1.21545 0.92843 0.82792 0.99843 0.90640 1.45894 1.61496 1.18716 1.08655 1.19898 0.79158 0.86422 0.84168 1.90700 1.50030 1.67153 1.34584 1.20105 1.05799 0.96474 0.87599 1.23563 0.86158 0.91145 0.96505 1.70694 1.28740 1.26790 0.97899 1.22734 0.81869 0.93375 0.94041 1.68006 1.32759 1.19378 0.96594 1.23569 0.91769 0.86745 0.96291 1.21929 0.97847 1.07368 0.98278 1.22169 0.99381 0.90878 0.83891 1.48799 1.15908 1.35713 1.10158 1.78571 1.22063 1.28042 0.86512 1.21769 0.95513 1.00445 0.98227 1.22139 0.98904 0.99557 0.97276 1.20785 0.83203 0.97149 0.94238 1.44165 1.03090 1.64780 1.18907 1.19137 0.95186 1.38105 0.86140 0.91166 1.25114 0.97780 0.99402 0.97025 1.70024 1.24001 1.43573 1.16719 0.86356 0.79393 0.79966 0.81355 1.21471 1.21718 1.20414 0.94167 0.91791 0.92691 0.75307 0.85378 0.85813 0.79357 0.80894 0.80095 0.93222 0.91955 0.93514 0.92798 0.96430 0.89647 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 7.72 37.16 0.29 -2.16 16 2 C 0.16 3.13 3.20 -67.60 -0.22 2.91 16 3 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 4 C 0.14 2.44 2.32 -67.81 -0.16 2.28 16 5 H 0.08 1.40 7.58 -51.93 -0.39 1.00 16 6 N -0.70 -11.51 3.47 -53.69 -0.19 -11.70 16 7 C 0.52 8.72 7.79 -10.99 -0.09 8.63 16 8 O -0.55 -11.20 15.70 5.56 0.09 -11.11 16 9 C -0.06 -0.78 6.33 -29.03 -0.18 -0.96 16 10 C 0.31 4.93 6.59 -157.01 -1.03 3.89 16 11 N -0.51 -8.76 11.25 -11.80 -0.13 -8.89 16 12 C 0.44 6.56 8.99 -323.14 -2.91 3.66 16 13 N -0.45 -5.41 10.48 -13.82 -0.14 -5.56 16 14 C 0.20 1.22 11.27 -17.08 -0.19 1.02 16 15 C -0.23 -0.94 10.06 -39.79 -0.40 -1.34 16 16 C 0.17 1.27 11.32 -16.59 -0.19 1.08 16 17 N -0.33 -4.25 3.91 -13.84 -0.05 -4.31 16 18 N -0.32 -4.97 12.78 32.39 0.41 -4.55 16 19 C -0.12 -2.17 5.58 -26.68 -0.15 -2.32 16 20 C -0.14 -2.62 5.93 -26.61 -0.16 -2.78 16 21 C 0.17 3.87 5.28 -3.71 -0.02 3.85 16 22 N -0.59 -13.26 2.65 -164.77 -0.44 -13.69 16 23 C -0.26 -6.32 8.58 -15.06 -0.13 -6.45 16 24 H 0.07 1.67 6.23 -52.48 -0.33 1.35 16 25 C 0.01 0.16 4.94 -17.43 -0.09 0.07 16 26 N -0.90 -24.94 11.23 55.49 0.62 -24.32 16 27 Si 0.90 20.60 29.58 -169.99 -5.03 15.57 16 28 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 29 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 30 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 1.24 7.67 -51.93 -0.40 0.84 16 33 H 0.05 0.96 6.37 -51.93 -0.33 0.63 16 34 H 0.41 6.69 7.77 -40.82 -0.32 6.37 16 35 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.19 0.25 8.06 -52.49 -0.42 -0.17 16 38 H 0.17 -0.08 8.06 -52.49 -0.42 -0.50 16 39 H 0.18 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 1.01 7.53 -51.93 -0.39 0.62 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.09 2.16 6.15 -51.93 -0.32 1.84 16 46 H 0.25 6.87 8.31 -40.82 -0.34 6.54 16 LS Contribution 375.17 15.07 5.65 5.65 Total: -1.00 -35.99 375.17 -11.09 -47.07 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.26 Total: 4.44 kcal Atomic # 6 Polarization: 17.01 SS G_CDS: -5.62 Total: 11.40 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: 0.08 Total: -73.02 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.99 -11.09 -47.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994428367.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.950 kcal (2) G-P(sol) polarization free energy of solvation -35.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds