Wall clock time and date at job start Wed Apr 1 2020 03:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47429 * 2 1 4 4 N 1.46498 * 109.47584 * 120.00040 * 2 1 3 5 5 C 1.34774 * 120.00348 * 275.00780 * 4 2 1 6 6 O 1.21562 * 119.99678 * 359.97438 * 5 4 2 7 7 C 1.47820 * 120.00350 * 179.97438 * 5 4 2 8 8 C 1.41570 * 120.37150 * 359.71177 * 7 5 4 9 9 C 1.34823 * 120.11411 * 179.78292 * 8 7 5 10 10 N 1.36058 * 120.82340 * 0.48504 * 9 8 7 11 11 N 1.40249 * 133.72978 * 179.74577 * 10 9 8 12 12 N 1.28971 * 107.02300 * 180.02562 * 11 10 9 13 13 N 1.28539 * 110.84331 * 0.02562 * 12 11 10 14 14 C 1.32615 * 110.18504 * 0.02562 * 13 12 11 15 15 C 1.38459 * 120.37385 * 179.97438 * 7 5 4 16 16 C 1.53004 * 109.47231 * 240.00327 * 2 1 3 17 17 C 1.53040 * 109.45984 * 59.99612 * 16 2 1 18 18 C 1.53195 * 109.31169 * 181.37308 * 17 16 2 19 19 N 1.46928 * 108.77547 * 305.37044 * 18 17 16 20 20 C 1.36946 * 120.62648 * 233.58541 * 19 18 17 21 21 H 1.08001 * 119.99879 * 27.80702 * 20 19 18 22 22 C 1.38814 * 119.99719 * 207.80443 * 20 19 18 23 23 N 1.31620 * 119.99709 * 25.84717 * 22 20 19 24 24 Si 1.86797 * 119.99712 * 205.56717 * 22 20 19 25 25 H 1.48493 * 109.47196 * 60.00574 * 24 22 20 26 26 H 1.48500 * 109.46719 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47268 * 299.99796 * 24 22 20 28 28 C 1.46924 * 118.74378 * 53.85512 * 19 18 17 29 29 C 1.53039 * 109.45048 * 180.02562 * 16 2 1 30 30 H 1.08996 * 109.47212 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47402 * 300.00175 * 1 2 3 32 32 H 1.08999 * 109.47350 * 59.99804 * 1 2 3 33 33 H 0.96999 * 119.99816 * 94.99466 * 4 2 1 34 34 H 1.08001 * 119.94704 * 0.02562 * 8 7 5 35 35 H 1.07998 * 119.58804 * 180.27994 * 9 8 7 36 36 H 1.08005 * 120.51899 * 359.95149 * 15 7 5 37 37 H 1.09003 * 109.46008 * 300.02908 * 16 2 1 38 38 H 1.09006 * 109.49747 * 61.42547 * 17 16 2 39 39 H 1.08994 * 109.52481 * 301.34165 * 17 16 2 40 40 H 1.08992 * 109.58544 * 185.58164 * 18 17 16 41 41 H 1.09001 * 109.70369 * 65.22301 * 18 17 16 42 42 H 0.96992 * 120.00366 * 4.05609 * 23 22 20 43 43 H 1.09007 * 109.58117 * 65.92823 * 28 19 18 44 44 H 1.08997 * 109.58707 * 186.35174 * 28 19 18 45 45 H 1.09004 * 109.49499 * 298.56924 * 29 16 2 46 46 H 1.08994 * 109.49949 * 58.63136 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8582 1.1612 2.4117 7 6 2.6393 -0.7153 3.5642 8 6 2.9722 -2.0903 3.5111 9 6 3.4249 -2.7198 4.6140 10 7 3.5597 -2.0522 5.7919 11 7 3.9878 -2.4253 7.0743 12 7 3.9115 -1.3747 7.8184 13 7 3.4785 -0.3684 7.1459 14 6 3.2432 -0.7243 5.8903 15 6 2.7750 -0.0320 4.7608 16 6 2.0400 -0.7212 -1.2493 17 6 1.5296 0.0005 -2.4987 18 6 2.0137 -0.7440 -3.7470 19 7 3.4755 -0.8766 -3.6814 20 6 4.2619 -0.4510 -4.7187 21 1 3.9243 0.3509 -5.3585 22 6 5.4929 -1.0503 -4.9476 23 7 5.7044 -2.2893 -4.5570 24 14 6.8465 -0.1009 -5.8169 25 1 7.1800 1.1153 -5.0331 26 1 8.0529 -0.9584 -5.9383 27 1 6.3827 0.2945 -7.1711 28 6 4.0772 -1.4800 -2.4845 29 6 3.5704 -0.7215 -1.2485 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8899 33 1 2.2490 -1.6317 1.1525 34 1 2.8671 -2.6351 2.5845 35 1 3.6807 -3.7678 4.5628 36 1 2.5236 1.0164 4.8252 37 1 1.6761 -1.7487 -1.2494 38 1 1.9134 1.0206 -2.5118 39 1 0.4400 0.0218 -2.4875 40 1 1.7375 -0.1808 -4.6383 41 1 1.5584 -1.7337 -3.7844 42 1 4.9827 -2.8034 -4.1625 43 1 3.7866 -2.5285 -2.4185 44 1 5.1629 -1.4026 -2.5427 45 1 3.9343 0.3057 -1.2737 46 1 3.9336 -1.2140 -0.3466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997247698.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:52 Heat of formation + Delta-G solvation = 129.452404 kcal Electronic energy + Delta-G solvation = -29681.741811 eV Core-core repulsion = 25609.998306 eV Total energy + Delta-G solvation = -4071.743505 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.86669 -40.69570 -38.97984 -38.10839 -35.77322 -34.50437 -33.51007 -32.59950 -31.10580 -30.96118 -30.48677 -28.86017 -26.19835 -25.29041 -25.27654 -23.34724 -23.16330 -22.32317 -21.45621 -20.80092 -19.54420 -19.05235 -18.52842 -17.54016 -17.39460 -17.35477 -16.26573 -15.65772 -15.56453 -15.19656 -14.69532 -14.30899 -14.27478 -13.91933 -13.73849 -13.61066 -13.57801 -13.46097 -13.29617 -12.97676 -12.67287 -12.55248 -12.52044 -12.05845 -11.85807 -11.68996 -11.54029 -11.52941 -10.92493 -10.75389 -10.72331 -10.54940 -10.52000 -10.36560 -10.12016 -10.01810 -9.86357 -9.41885 -9.29784 -9.17453 -8.42215 -6.94902 -6.15866 -3.29063 -0.48324 -0.14633 1.16273 1.57490 2.03716 2.48875 2.88083 3.19522 3.45265 3.48644 3.51498 3.66263 3.73002 3.98015 4.28300 4.34718 4.53735 4.68756 4.73057 4.88352 4.95288 5.04885 5.06426 5.13336 5.19469 5.34650 5.35412 5.39501 5.50458 5.59538 5.71989 5.72737 5.84292 5.87997 6.03638 6.06542 6.13127 6.26638 6.36479 6.39387 6.50748 6.62877 6.73397 6.95986 7.07471 7.09765 7.72885 7.85738 7.94931 8.51093 9.04812 9.78180 10.22289 11.14502 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.014779 B = 0.002377 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.097095 B =11776.682846 C =12866.174551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.144 3.856 3 H 0.091 0.909 4 N -0.706 5.706 5 C 0.559 3.441 6 O -0.520 6.520 7 C -0.067 4.067 8 C -0.115 4.115 9 C 0.110 3.890 10 N -0.295 5.295 11 N -0.107 5.107 12 N -0.007 5.007 13 N -0.312 5.312 14 C 0.237 3.763 15 C -0.024 4.024 16 C -0.085 4.085 17 C -0.126 4.126 18 C 0.147 3.853 19 N -0.599 5.599 20 C -0.350 4.350 21 H 0.056 0.944 22 C -0.024 4.024 23 N -0.916 5.916 24 Si 1.063 2.937 25 H -0.293 1.293 26 H -0.285 1.285 27 H -0.292 1.292 28 C 0.151 3.849 29 C -0.129 4.129 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.400 0.600 34 H 0.173 0.827 35 H 0.190 0.810 36 H 0.182 0.818 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.015 0.985 42 H 0.268 0.732 43 H 0.015 0.985 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.622 -1.428 15.452 18.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.041 3.959 3 H 0.110 0.890 4 N -0.357 5.357 5 C 0.344 3.656 6 O -0.396 6.396 7 C -0.079 4.079 8 C -0.138 4.138 9 C -0.017 4.017 10 N -0.076 5.076 11 N -0.090 5.090 12 N 0.000 5.000 13 N -0.173 5.173 14 C -0.017 4.017 15 C -0.048 4.048 16 C -0.104 4.104 17 C -0.165 4.165 18 C 0.021 3.979 19 N -0.323 5.323 20 C -0.479 4.479 21 H 0.074 0.926 22 C -0.226 4.226 23 N -0.556 5.556 24 Si 0.893 3.107 25 H -0.220 1.220 26 H -0.211 1.211 27 H -0.219 1.219 28 C 0.025 3.975 29 C -0.169 4.169 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.236 0.764 34 H 0.190 0.810 35 H 0.207 0.793 36 H 0.199 0.801 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.033 0.967 42 H 0.079 0.921 43 H 0.033 0.967 44 H 0.097 0.903 45 H 0.079 0.921 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.757 -0.881 16.507 18.260 hybrid contribution -1.709 -0.584 -0.439 1.858 sum -9.466 -1.465 16.068 18.706 Atomic orbital electron populations 1.22218 0.95108 1.02152 1.02686 1.21270 0.93895 0.97788 0.82992 0.89045 1.46015 1.66039 1.14150 1.09483 1.17733 0.78621 0.86542 0.82686 1.90849 1.49363 1.14877 1.84548 1.20404 0.99040 0.93827 0.94649 1.21237 0.99755 0.93966 0.98882 1.21607 0.99193 0.99989 0.80863 1.49062 1.38727 1.09482 1.10287 1.82840 1.24417 1.18318 0.83387 1.77908 1.06734 0.93212 1.22159 1.75271 1.21431 1.20885 0.99684 1.22770 0.99463 0.83574 0.95859 1.20802 0.95412 1.02042 0.86498 1.21344 0.97002 0.99145 0.92876 1.22075 0.98906 1.00146 0.95412 1.20882 0.85716 0.96371 0.94913 1.44131 1.00025 1.72637 1.15517 1.19963 1.02575 1.15372 1.10037 0.92648 1.25835 1.00181 0.96049 1.00525 1.70809 1.37034 1.06471 1.41263 0.83541 0.76400 0.75107 0.75662 1.22034 1.21098 1.21943 1.21020 0.98977 0.93043 0.84474 1.22195 0.93724 1.01820 0.99125 0.92483 0.92426 0.90799 0.76417 0.80978 0.79322 0.80112 0.91340 0.91941 0.92421 0.92595 0.96731 0.92125 0.96686 0.90330 0.92147 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.13 37.15 0.34 -1.22 16 2 C 0.14 1.55 2.16 -67.93 -0.15 1.41 16 3 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 4 N -0.71 -6.04 4.32 -54.76 -0.24 -6.28 16 5 C 0.56 5.41 7.74 -12.34 -0.10 5.31 16 6 O -0.52 -6.91 16.03 5.31 0.09 -6.83 16 7 C -0.07 -0.49 5.90 -104.63 -0.62 -1.11 16 8 C -0.11 -0.51 9.48 -39.52 -0.37 -0.89 16 9 C 0.11 0.57 11.19 -16.89 -0.19 0.38 16 10 N -0.30 -2.73 3.94 -12.43 -0.05 -2.78 16 11 N -0.11 -1.24 13.98 60.35 0.84 -0.40 16 12 N -0.01 -0.09 13.35 60.35 0.81 0.71 16 13 N -0.31 -3.95 12.27 31.03 0.38 -3.57 16 14 C 0.24 2.44 8.02 -156.36 -1.25 1.19 16 15 C -0.02 -0.20 9.70 -38.65 -0.37 -0.58 16 16 C -0.08 -1.08 1.79 -90.58 -0.16 -1.24 16 17 C -0.13 -1.84 5.04 -26.61 -0.13 -1.97 16 18 C 0.15 2.80 6.51 -3.71 -0.02 2.77 16 19 N -0.60 -13.89 2.85 -172.05 -0.49 -14.38 16 20 C -0.35 -9.34 9.49 -15.05 -0.14 -9.49 16 21 H 0.06 1.50 7.95 -52.49 -0.42 1.08 16 22 C -0.02 -0.65 4.66 -17.43 -0.08 -0.73 16 23 N -0.92 -26.27 12.46 55.49 0.69 -25.57 16 24 Si 1.06 24.46 29.99 -169.99 -5.10 19.37 16 25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 28 C 0.15 3.15 4.72 -3.49 -0.02 3.14 16 29 C -0.13 -2.03 5.24 -26.39 -0.14 -2.16 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.69 6.40 -51.93 -0.33 0.36 16 33 H 0.40 2.36 6.46 -40.82 -0.26 2.10 16 34 H 0.17 0.22 6.46 -52.49 -0.34 -0.12 16 35 H 0.19 0.33 8.06 -52.49 -0.42 -0.09 16 36 H 0.18 1.44 7.67 -52.48 -0.40 1.04 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.70 6.36 -51.93 -0.33 0.37 16 40 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 41 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.27 7.67 6.69 -40.82 -0.27 7.39 16 43 H 0.02 0.32 7.87 -51.93 -0.41 -0.09 16 44 H 0.08 1.91 6.31 -51.93 -0.33 1.58 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.05 0.62 7.40 -51.93 -0.38 0.23 16 LS Contribution 373.27 15.07 5.63 5.63 Total: -1.00 -33.87 373.27 -6.89 -40.76 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -6.04 Total: -1.47 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -3.41 Total: -5.20 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 1.95 Total: -52.25 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: 0.09 Total: -6.83 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.10 Total: 19.37 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.87 -6.89 -40.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997247698.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.216 kcal (2) G-P(sol) polarization free energy of solvation -33.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds