Wall clock time and date at job start Wed Apr 1 2020 03:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47205 * 2 1 4 4 N 1.46502 * 109.46631 * 240.00155 * 2 1 3 5 5 C 1.34774 * 120.00231 * 85.00358 * 4 2 1 6 6 O 1.21564 * 119.99815 * 359.97438 * 5 4 2 7 7 C 1.47724 * 120.00133 * 179.97438 * 5 4 2 8 8 C 1.40118 * 120.35060 * 359.97438 * 7 5 4 9 9 N 1.31259 * 121.14902 * 180.02562 * 8 7 5 10 10 C 1.32712 * 121.79930 * 0.02562 * 9 8 7 11 11 N 1.37126 * 133.40234 * 179.97438 * 10 9 8 12 12 H 0.97001 * 126.58739 * 0.05430 * 11 10 9 13 13 N 1.40189 * 106.81550 * 180.02562 * 11 10 9 14 14 N 1.28666 * 109.51596 * 0.02562 * 13 11 10 15 15 C 1.35338 * 109.99695 * 359.97438 * 14 13 11 16 16 C 1.39428 * 120.35122 * 180.02562 * 7 5 4 17 17 C 1.52998 * 109.47207 * 120.00224 * 2 1 3 18 18 C 1.53041 * 109.46120 * 60.06308 * 17 2 1 19 19 C 1.53196 * 109.31354 * 178.61335 * 18 17 2 20 20 N 1.46927 * 108.77083 * 54.63773 * 19 18 17 21 21 C 1.36945 * 120.62679 * 126.41242 * 20 19 18 22 22 H 1.07998 * 119.99805 * 207.66141 * 21 20 19 23 23 C 1.38812 * 119.99937 * 27.66547 * 21 20 19 24 24 N 1.31617 * 120.00155 * 17.36491 * 23 21 20 25 25 Si 1.86803 * 119.99966 * 197.36549 * 23 21 20 26 26 H 1.48502 * 109.47147 * 89.99541 * 25 23 21 27 27 H 1.48494 * 109.47096 * 209.99774 * 25 23 21 28 28 H 1.48498 * 109.46932 * 329.99968 * 25 23 21 29 29 C 1.46922 * 118.74286 * 306.39223 * 20 19 18 30 30 C 1.53045 * 109.45786 * 300.00030 * 17 2 1 31 31 H 1.08998 * 109.47565 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47455 * 299.99879 * 1 2 3 33 33 H 1.09004 * 109.47419 * 59.99838 * 1 2 3 34 34 H 0.97002 * 119.99808 * 264.99738 * 4 2 1 35 35 H 1.08005 * 119.42637 * 0.02698 * 8 7 5 36 36 H 1.08000 * 120.95363 * 359.95943 * 16 7 5 37 37 H 1.08998 * 109.46316 * 180.02562 * 17 2 1 38 38 H 1.08996 * 109.50005 * 298.56797 * 18 17 2 39 39 H 1.09009 * 109.49669 * 58.66555 * 18 17 2 40 40 H 1.09000 * 109.58774 * 294.85086 * 19 18 17 41 41 H 1.08999 * 109.58517 * 174.42521 * 19 18 17 42 42 H 0.97000 * 120.00221 * 180.02562 * 24 23 21 43 43 H 1.09007 * 109.58561 * 293.82138 * 29 20 19 44 44 H 1.08989 * 109.58737 * 173.39852 * 29 20 19 45 45 H 1.08999 * 109.49268 * 301.33334 * 30 17 2 46 46 H 1.09000 * 109.49849 * 61.40406 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1469 -0.0183 -2.3572 6 8 1.8575 1.1612 -2.4118 7 6 2.6398 -0.7145 -3.5632 8 6 2.9760 -2.0736 -3.5084 9 7 3.4159 -2.7076 -4.5703 10 6 3.5629 -2.0962 -5.7389 11 7 3.9920 -2.5127 -6.9729 12 1 4.2841 -3.4062 -7.2122 13 7 3.9269 -1.3992 -7.8221 14 7 3.4939 -0.3817 -7.1643 15 6 3.2486 -0.7311 -5.8800 16 6 2.7763 -0.0259 -4.7679 17 6 2.0400 -0.7213 1.2492 18 6 1.5310 -2.1646 1.2481 19 6 2.0720 -2.8935 2.4822 20 7 1.7086 -2.1264 3.6815 21 6 1.0454 -2.7260 4.7188 22 1 0.4034 -2.1402 5.3599 23 6 1.1984 -4.0868 4.9463 24 7 2.2120 -4.7336 4.4110 25 14 -0.0342 -5.0000 6.0122 26 1 -1.1357 -5.5185 5.1617 27 1 0.6428 -6.1340 6.6910 28 1 -0.5897 -4.0735 7.0310 29 6 2.0705 -0.7040 3.7469 30 6 1.5297 0.0004 2.4986 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 2.2489 -1.6318 -1.1527 35 1 2.8715 -2.6090 -2.5762 36 1 2.5251 1.0219 -4.8403 37 1 3.1300 -0.7208 1.2493 38 1 0.4414 -2.1661 1.2732 39 1 1.8754 -2.6711 0.3464 40 1 3.1569 -2.9723 2.4137 41 1 1.6340 -3.8900 2.5392 42 1 2.3188 -5.6846 4.5697 43 1 3.1555 -0.6042 3.7816 44 1 1.6317 -0.2559 4.6383 45 1 1.8732 1.0348 2.4870 46 1 0.4400 -0.0211 2.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997620196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:27 Heat of formation + Delta-G solvation = 107.646303 kcal Electronic energy + Delta-G solvation = -29592.901453 eV Core-core repulsion = 25520.212364 eV Total energy + Delta-G solvation = -4072.689089 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.86193 -40.45499 -38.90006 -37.96920 -35.45248 -34.47756 -33.15731 -32.20219 -31.62687 -30.53677 -30.04783 -28.78476 -25.74946 -25.31339 -24.86902 -23.28636 -23.16288 -22.43548 -21.22917 -20.49318 -19.19461 -18.99219 -18.67035 -17.38233 -16.95822 -16.69299 -16.60897 -15.74856 -15.14449 -14.92912 -14.64735 -14.29824 -14.17183 -13.87038 -13.70572 -13.58583 -13.52229 -13.07762 -13.03755 -12.79719 -12.54059 -12.45820 -12.23578 -12.00883 -11.68973 -11.55383 -11.24635 -10.88730 -10.76488 -10.62477 -10.49780 -10.21311 -10.19203 -9.98868 -9.87502 -9.85401 -9.63968 -9.57907 -9.41729 -9.11281 -8.49959 -6.70944 -5.82539 -3.24242 -0.30330 0.13241 1.49646 1.56228 2.43641 2.80502 3.24607 3.35042 3.36331 3.42631 3.43363 3.72214 3.76179 4.10403 4.19545 4.46638 4.51007 4.79052 4.97258 5.10290 5.18511 5.26127 5.30866 5.35753 5.47982 5.59343 5.59664 5.67704 5.79063 5.95459 6.07217 6.09372 6.14720 6.21496 6.29261 6.37121 6.48311 6.53339 6.67518 6.71103 6.78006 6.95000 6.96482 7.24713 7.30012 7.34237 7.60273 7.76701 7.97333 8.41671 9.18353 9.81869 10.38135 11.25899 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018174 B = 0.002251 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.310832 B =12433.190819 C =13530.025704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 H 0.086 0.914 4 N -0.712 5.712 5 C 0.568 3.432 6 O -0.533 6.533 7 C -0.205 4.205 8 C 0.216 3.784 9 N -0.486 5.486 10 C 0.294 3.706 11 N -0.482 5.482 12 H 0.455 0.545 13 N 0.019 4.981 14 N -0.191 5.191 15 C -0.075 4.075 16 C 0.084 3.916 17 C -0.087 4.087 18 C -0.137 4.137 19 C 0.170 3.830 20 N -0.592 5.592 21 C -0.250 4.250 22 H 0.066 0.934 23 C 0.001 3.999 24 N -0.903 5.903 25 Si 0.901 3.099 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.279 1.279 29 C 0.145 3.855 30 C -0.126 4.126 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.400 0.600 35 H 0.181 0.819 36 H 0.167 0.833 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.041 0.959 40 H 0.016 0.984 41 H 0.087 0.913 42 H 0.253 0.747 43 H 0.016 0.984 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.985 5.652 -19.008 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.043 3.957 3 H 0.104 0.896 4 N -0.364 5.364 5 C 0.354 3.646 6 O -0.411 6.411 7 C -0.214 4.214 8 C 0.042 3.958 9 N -0.199 5.199 10 C 0.049 3.951 11 N -0.208 5.208 12 H 0.303 0.697 13 N 0.036 4.964 14 N -0.072 5.072 15 C -0.201 4.201 16 C 0.053 3.947 17 C -0.106 4.106 18 C -0.176 4.176 19 C 0.045 3.955 20 N -0.314 5.314 21 C -0.380 4.380 22 H 0.083 0.917 23 C -0.197 4.197 24 N -0.548 5.548 25 Si 0.731 3.269 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.205 1.205 29 C 0.019 3.981 30 C -0.166 4.166 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.237 0.763 35 H 0.198 0.802 36 H 0.185 0.815 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.035 0.965 41 H 0.106 0.894 42 H 0.063 0.937 43 H 0.034 0.966 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.285 6.008 -20.451 21.438 hybrid contribution -0.543 -1.323 1.210 1.873 sum 1.742 4.685 -19.241 19.880 Atomic orbital electron populations 1.22241 0.95098 1.02676 1.02170 1.21184 0.94412 0.96904 0.83216 0.89583 1.46146 1.66409 1.14272 1.09593 1.17674 0.77988 0.86420 0.82554 1.90803 1.50351 1.15199 1.84738 1.20844 1.08987 0.95876 0.95688 1.23157 0.86974 0.90233 0.95447 1.66714 1.17996 1.38566 0.96673 1.19618 0.96066 0.91048 0.88340 1.47560 1.53796 1.14029 1.05393 0.69668 1.81751 1.14133 0.87306 1.13234 1.74911 1.09423 1.19887 1.03005 1.20408 1.11797 0.93799 0.94067 1.21086 0.85678 1.00847 0.87089 1.21342 1.00158 0.96325 0.92757 1.22315 1.01233 0.94404 0.99694 1.20768 0.96339 0.95848 0.82595 1.44045 1.66790 1.04712 1.15895 1.19201 1.19195 0.91972 1.07647 0.91678 1.25022 0.97116 0.98255 0.99308 1.70028 1.27843 1.08864 1.48063 0.86306 0.80984 0.79527 0.80067 1.21477 1.21814 1.20454 1.20894 0.96254 0.86280 0.94704 1.22073 1.01168 0.97690 0.95621 0.91822 0.91021 0.92850 0.76322 0.80238 0.81535 0.91250 0.91882 0.94005 0.96548 0.89445 0.93669 0.96565 0.92768 0.92965 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 8.78 37.16 0.33 -1.65 16 2 C 0.15 1.77 2.40 -67.93 -0.16 1.61 16 3 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 4 N -0.71 -7.39 4.95 -54.79 -0.27 -7.66 16 5 C 0.57 6.34 7.74 -12.39 -0.10 6.25 16 6 O -0.53 -7.64 16.06 5.31 0.09 -7.56 16 7 C -0.21 -1.89 5.88 -104.87 -0.62 -2.51 16 8 C 0.22 1.74 10.69 -17.09 -0.18 1.56 16 9 N -0.49 -4.53 10.37 -12.03 -0.12 -4.65 16 10 C 0.29 2.82 8.49 -155.92 -1.32 1.50 16 11 N -0.48 -3.74 7.53 31.15 0.23 -3.51 16 12 H 0.45 1.95 8.96 -182.53 -1.64 0.32 16 13 N 0.02 0.18 13.82 60.35 0.83 1.02 16 14 N -0.19 -2.08 12.40 32.17 0.40 -1.68 16 15 C -0.08 -0.77 7.27 -84.74 -0.62 -1.39 16 16 C 0.08 0.79 9.75 -38.52 -0.38 0.42 16 17 C -0.09 -1.21 2.14 -90.58 -0.19 -1.41 16 18 C -0.14 -2.17 4.81 -26.61 -0.13 -2.29 16 19 C 0.17 3.68 5.31 -3.71 -0.02 3.66 16 20 N -0.59 -13.84 3.00 -172.32 -0.52 -14.36 16 21 C -0.25 -6.57 9.59 -15.06 -0.14 -6.72 16 22 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 23 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 24 N -0.90 -25.21 11.19 55.49 0.62 -24.59 16 25 Si 0.90 21.04 29.59 -169.99 -5.03 16.01 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 C 0.15 2.82 6.52 -3.71 -0.02 2.80 16 30 C -0.13 -1.93 4.97 -26.61 -0.13 -2.06 16 31 H 0.06 0.78 6.46 -51.93 -0.34 0.44 16 32 H 0.07 0.86 6.46 -51.93 -0.34 0.53 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.40 3.41 4.88 -40.82 -0.20 3.21 16 35 H 0.18 0.98 6.39 -52.48 -0.34 0.64 16 36 H 0.17 1.45 7.71 -52.49 -0.40 1.05 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 1.05 6.51 -51.93 -0.34 0.71 16 39 H 0.04 0.54 6.46 -51.92 -0.34 0.20 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 2.16 6.04 -51.93 -0.31 1.85 16 42 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 43 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.05 1.05 7.93 -51.94 -0.41 0.64 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.06 1.02 6.51 -51.93 -0.34 0.68 16 LS Contribution 368.27 15.07 5.55 5.55 Total: -1.00 -31.77 368.27 -9.03 -40.81 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -7.04 Total: 0.91 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -3.78 Total: -0.29 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 1.18 Total: -55.43 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: 0.09 Total: -7.56 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.77 -9.03 -40.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997620196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.452 kcal (2) G-P(sol) polarization free energy of solvation -31.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds