Wall clock time and date at job start Wed Apr 1 2020 03:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.49386 * 2 1 4 4 C 1.53187 * 109.49643 * 120.06324 * 2 1 3 5 5 N 1.46925 * 108.77602 * 174.61769 * 4 2 1 6 6 C 1.34778 * 120.63355 * 126.36442 * 5 4 2 7 7 O 1.21569 * 119.99425 * 3.98000 * 6 5 4 8 8 C 1.47723 * 120.00397 * 183.97804 * 6 5 4 9 9 C 1.40117 * 120.34885 * 309.62405 * 8 6 5 10 10 N 1.31262 * 121.14579 * 179.97438 * 9 8 6 11 11 C 1.32717 * 121.80094 * 359.95841 * 10 9 8 12 12 C 1.40780 * 120.68372 * 0.04250 * 11 10 9 13 13 C 1.39426 * 120.35090 * 129.59502 * 8 6 5 14 14 N 1.35330 * 107.75670 * 180.02562 * 12 11 10 15 15 N 1.28662 * 110.00007 * 359.97438 * 14 12 11 16 16 N 1.37114 * 133.40150 * 180.02562 * 11 10 9 17 17 C 1.46498 * 126.59352 * 359.96612 * 16 11 10 18 18 C 1.46933 * 118.73964 * 306.64624 * 5 4 2 19 19 C 1.52766 * 109.00646 * 53.30547 * 18 5 4 20 20 C 1.53037 * 109.38403 * 305.58842 * 19 18 5 21 21 H 1.08991 * 109.46198 * 181.25977 * 20 19 18 22 22 N 1.46498 * 109.46067 * 301.22202 * 20 19 18 23 23 C 1.36932 * 120.00232 * 275.06511 * 22 20 19 24 24 H 1.08009 * 119.99880 * 0.02562 * 23 22 20 25 25 C 1.38815 * 120.00515 * 179.97438 * 23 22 20 26 26 N 1.31617 * 120.00255 * 180.02562 * 25 23 22 27 27 Si 1.86803 * 119.99656 * 0.02562 * 25 23 22 28 28 H 1.48493 * 109.47298 * 89.99722 * 27 25 23 29 29 H 1.48502 * 109.46949 * 209.99914 * 27 25 23 30 30 H 1.48497 * 109.46893 * 329.99610 * 27 25 23 31 31 H 1.09000 * 109.47485 * 299.93327 * 1 2 3 32 32 H 1.08996 * 109.47492 * 59.93892 * 1 2 3 33 33 H 1.09007 * 109.46991 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.58843 * 54.83511 * 4 2 1 35 35 H 1.09002 * 109.59133 * 294.40598 * 4 2 1 36 36 H 1.07991 * 119.42714 * 359.97359 * 9 8 6 37 37 H 1.08004 * 120.95324 * 0.02562 * 13 8 6 38 38 H 1.08997 * 109.47551 * 270.01642 * 17 16 11 39 39 H 1.09005 * 109.46870 * 30.01803 * 17 16 11 40 40 H 1.09004 * 109.47673 * 150.01411 * 17 16 11 41 41 H 1.08995 * 109.58600 * 173.14009 * 18 5 4 42 42 H 1.08992 * 109.58624 * 293.56787 * 18 5 4 43 43 H 1.09000 * 109.56200 * 185.55337 * 19 18 5 44 44 H 1.09003 * 109.35990 * 65.49748 * 19 18 5 45 45 H 0.97008 * 120.00204 * 95.07081 * 22 20 19 46 46 H 0.96998 * 119.99896 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7234 1.2498 5 7 3.5046 -0.8281 1.1702 6 6 4.2808 -0.3840 2.1786 7 8 3.7701 0.0422 3.1962 8 6 5.7518 -0.4153 2.0475 9 6 6.4019 -1.5893 1.6448 10 7 7.7081 -1.6344 1.5226 11 6 8.4707 -0.5773 1.7721 12 6 7.8975 0.6415 2.1817 13 6 6.5080 0.7234 2.3225 14 7 8.9020 1.5306 2.3604 15 7 10.0330 0.9747 2.1008 16 7 9.8235 -0.3591 1.7236 17 6 10.8524 -1.3327 1.3496 18 6 4.1062 -1.4204 -0.0324 19 6 3.5715 -0.6942 -1.2654 20 6 2.0415 -0.7230 -1.2482 21 1 1.6588 -0.2247 -2.1388 22 7 1.5796 -2.1132 -1.2306 23 6 1.4500 -2.8065 -2.4043 24 1 1.6887 -2.3286 -3.3430 25 6 1.0130 -4.1240 -2.3876 26 7 0.8889 -4.7905 -3.5157 27 14 0.6009 -4.9508 -0.7640 28 1 -0.8332 -4.7317 -0.4469 29 1 0.8677 -6.4079 -0.8688 30 1 1.4406 -4.3701 0.3143 31 1 -0.3634 0.5128 0.8906 32 1 -0.3634 0.5147 -0.8894 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6057 -1.7214 1.2982 35 1 1.7633 -0.1576 2.1390 36 1 5.8182 -2.4725 1.4312 37 1 6.0346 1.6426 2.6347 38 1 11.1895 -1.8649 2.2391 39 1 10.4369 -2.0443 0.6360 40 1 11.6962 -0.8133 0.8954 41 1 5.1901 -1.3143 0.0111 42 1 3.8424 -2.4763 -0.0907 43 1 3.9345 -1.1888 -2.1664 44 1 3.9160 0.3399 -1.2535 45 1 1.3656 -2.5426 -0.3875 46 1 0.5831 -5.7110 -3.5041 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036121286.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:30 Heat of formation + Delta-G solvation = 120.792270 kcal Electronic energy + Delta-G solvation = -30554.863466 eV Core-core repulsion = 26482.744429 eV Total energy + Delta-G solvation = -4072.119037 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.69398 -40.59852 -38.81375 -37.80968 -35.23850 -34.58780 -33.11682 -32.47278 -31.64164 -31.02788 -29.85991 -28.12835 -26.81017 -25.63005 -25.09364 -23.90458 -23.19439 -21.85688 -21.76144 -20.57570 -18.93648 -18.44020 -18.18630 -17.84773 -16.86348 -16.77526 -16.47912 -15.90050 -15.14245 -14.97133 -14.56567 -14.42634 -14.09561 -13.99767 -13.71038 -13.68972 -13.54153 -13.34850 -13.31962 -13.07664 -12.78572 -12.65834 -12.38400 -12.05679 -11.85081 -11.68048 -11.51878 -11.32482 -11.06293 -11.03208 -10.74573 -10.64030 -10.36159 -10.27419 -9.94762 -9.77562 -9.62319 -9.56811 -9.21863 -9.02410 -8.53170 -7.35796 -5.84773 -3.20777 -0.14558 0.40132 1.41219 1.72055 2.44644 2.80776 3.19317 3.27843 3.31874 3.39422 3.42131 3.75180 3.91175 4.16554 4.27656 4.38060 4.50427 4.67889 4.82595 4.95977 4.98484 5.02907 5.05711 5.12206 5.24770 5.33277 5.40301 5.43595 5.52486 5.55779 5.64622 5.72197 5.76308 5.83100 5.96777 5.99064 6.12833 6.19262 6.30313 6.35980 6.44709 6.57987 6.67386 6.76891 7.11241 7.35578 7.44623 7.91121 8.00676 8.34036 9.11930 9.84311 10.03722 11.33509 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.014419 B = 0.003120 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.480556 B = 8972.444994 C = 9932.069347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 H 0.073 0.927 4 C 0.118 3.882 5 N -0.593 5.593 6 C 0.568 3.432 7 O -0.536 6.536 8 C -0.193 4.193 9 C 0.212 3.788 10 N -0.483 5.483 11 C 0.284 3.716 12 C -0.071 4.071 13 C 0.069 3.931 14 N -0.199 5.199 15 N 0.009 4.991 16 N -0.385 5.385 17 C 0.101 3.899 18 C 0.103 3.897 19 C -0.150 4.150 20 C 0.185 3.815 21 H 0.062 0.938 22 N -0.743 5.743 23 C -0.242 4.242 24 H 0.090 0.910 25 C 0.007 3.993 26 N -0.932 5.932 27 Si 0.879 3.121 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.184 0.816 37 H 0.159 0.841 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.053 0.947 45 H 0.360 0.640 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.407 8.825 10.231 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.132 4.132 3 H 0.091 0.909 4 C -0.004 4.004 5 N -0.325 5.325 6 C 0.354 3.646 7 O -0.414 6.414 8 C -0.202 4.202 9 C 0.039 3.961 10 N -0.197 5.197 11 C 0.041 3.959 12 C -0.197 4.197 13 C 0.038 3.962 14 N -0.079 5.079 15 N 0.027 4.973 16 N -0.181 5.181 17 C -0.040 4.040 18 C -0.019 4.019 19 C -0.191 4.191 20 C 0.075 3.925 21 H 0.080 0.920 22 N -0.387 5.387 23 C -0.372 4.372 24 H 0.108 0.892 25 C -0.189 4.189 26 N -0.580 5.580 27 Si 0.709 3.291 28 H -0.210 1.210 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.201 0.799 37 H 0.177 0.823 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.071 0.929 45 H 0.194 0.806 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.774 9.262 10.461 21.072 hybrid contribution -1.113 -1.021 0.963 1.792 sum 14.660 8.240 11.424 20.331 Atomic orbital electron populations 1.21675 0.94004 1.02870 1.01068 1.21772 0.96674 0.99362 0.95419 0.90891 1.21730 0.77913 1.01478 0.99243 1.48083 1.07260 1.59342 1.17771 1.17755 0.85199 0.78173 0.83438 1.90803 1.74513 1.47381 1.28677 1.20714 0.95485 0.95946 1.08063 1.23215 0.88000 0.97101 0.87821 1.66697 1.05928 1.27411 1.19678 1.19543 0.86377 0.92161 0.97834 1.20304 0.95308 0.92233 1.11835 1.20878 0.88652 0.98509 0.88137 1.74863 0.95311 1.24820 1.12871 1.81749 1.16496 0.86595 1.12413 1.49979 1.03811 1.11083 1.53206 1.22109 0.89476 0.90011 1.02409 1.21966 0.96810 0.99117 0.84000 1.22434 1.00118 0.99094 0.97443 1.20183 0.90801 0.86217 0.95329 0.92030 1.42840 1.80693 1.09315 1.05862 1.19041 1.37752 0.94153 0.86265 0.89175 1.24646 1.01473 0.96711 0.96027 1.69687 1.52932 1.10870 1.24478 0.86667 0.78535 0.79320 0.84581 1.21049 1.21765 1.20437 0.93422 0.92214 0.91645 0.91052 0.89140 0.79941 0.82296 0.89745 0.88177 0.88303 0.90789 0.89465 0.90001 0.92855 0.80586 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.06 37.16 0.34 -1.55 16 2 C -0.11 -1.56 2.67 -90.50 -0.24 -1.80 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.12 1.67 5.41 -3.71 -0.02 1.65 16 5 N -0.59 -8.01 2.98 -174.19 -0.52 -8.53 16 6 C 0.57 7.74 7.25 -12.38 -0.09 7.65 16 7 O -0.54 -8.80 16.47 5.30 0.09 -8.71 16 8 C -0.19 -2.26 5.01 -104.87 -0.53 -2.78 16 9 C 0.21 2.30 8.52 -17.09 -0.15 2.15 16 10 N -0.48 -5.58 10.37 -12.04 -0.12 -5.70 16 11 C 0.28 3.39 8.05 -155.93 -1.26 2.13 16 12 C -0.07 -0.87 7.27 -84.74 -0.62 -1.49 16 13 C 0.07 0.78 9.93 -38.51 -0.38 0.40 16 14 N -0.20 -2.56 12.40 32.17 0.40 -2.16 16 15 N 0.01 0.10 13.71 60.35 0.83 0.93 16 16 N -0.38 -3.99 4.10 -67.18 -0.28 -4.27 16 17 C 0.10 0.58 11.54 59.85 0.69 1.27 16 18 C 0.10 1.37 5.08 -3.93 -0.02 1.35 16 19 C -0.15 -2.17 5.76 -26.83 -0.15 -2.32 16 20 C 0.18 3.02 2.53 -67.89 -0.17 2.85 16 21 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 22 N -0.74 -15.08 3.45 -53.39 -0.18 -15.26 16 23 C -0.24 -6.12 10.41 -15.06 -0.16 -6.28 16 24 H 0.09 2.48 8.06 -52.48 -0.42 2.06 16 25 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 26 N -0.93 -27.70 13.97 55.49 0.78 -26.93 16 27 Si 0.88 20.62 27.74 -169.99 -4.71 15.90 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 30 H -0.28 -6.02 6.52 56.52 0.37 -5.65 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.02 7.54 -51.93 -0.39 0.63 16 34 H 0.07 1.09 6.64 -51.93 -0.34 0.74 16 35 H 0.09 1.26 7.03 -51.93 -0.36 0.90 16 36 H 0.18 1.68 7.03 -52.49 -0.37 1.31 16 37 H 0.16 1.59 8.06 -52.48 -0.42 1.16 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.84 4.54 -51.93 -0.24 0.60 16 42 H 0.09 1.31 7.74 -51.93 -0.40 0.90 16 43 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.36 7.31 3.79 -40.82 -0.15 7.15 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 371.84 15.07 5.60 5.60 Total: -1.00 -32.01 371.84 -7.05 -39.06 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.08 Total: 6.73 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -2.85 Total: 3.33 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: 0.90 Total: -61.91 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.71 Total: 15.90 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.01 -7.05 -39.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036121286.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.856 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds