Wall clock time and date at job start Wed Apr 1 2020 03:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49647 * 2 1 4 4 C 1.53627 * 109.45425 * 120.20712 * 2 1 3 5 5 N 1.46930 * 108.53678 * 174.74252 * 4 2 1 6 6 C 1.34782 * 120.62642 * 126.37121 * 5 4 2 7 7 O 1.21562 * 120.00084 * 3.13909 * 6 5 4 8 8 C 1.47723 * 119.99844 * 183.13853 * 6 5 4 9 9 C 1.40113 * 120.35117 * 130.28685 * 8 6 5 10 10 N 1.31258 * 121.15000 * 180.26322 * 9 8 6 11 11 C 1.32723 * 121.79848 * 359.75385 * 10 9 8 12 12 C 1.40779 * 120.68022 * 359.97438 * 11 10 9 13 13 C 1.39432 * 120.35042 * 310.04320 * 8 6 5 14 14 N 1.35338 * 107.75653 * 180.02562 * 12 11 10 15 15 N 1.28669 * 109.99530 * 0.02562 * 14 12 11 16 16 N 1.37122 * 133.40022 * 179.97438 * 11 10 9 17 17 C 1.46497 * 126.59327 * 0.02562 * 16 11 10 18 18 C 1.46925 * 118.73924 * 306.09059 * 5 4 2 19 19 C 1.53192 * 108.77425 * 53.86556 * 18 5 4 20 20 C 1.53039 * 109.49821 * 239.93365 * 2 1 3 21 21 H 1.08997 * 109.46424 * 298.67150 * 20 2 1 22 22 N 1.46503 * 109.46072 * 58.63601 * 20 2 1 23 23 C 1.36932 * 120.00106 * 205.07220 * 22 20 2 24 24 H 1.08002 * 119.99988 * 359.97438 * 23 22 20 25 25 C 1.38816 * 120.00246 * 179.97438 * 23 22 20 26 26 N 1.31617 * 119.99946 * 179.97438 * 25 23 22 27 27 Si 1.86794 * 119.99821 * 359.97438 * 25 23 22 28 28 H 1.48506 * 109.47163 * 90.00173 * 27 25 23 29 29 H 1.48498 * 109.47205 * 209.99884 * 27 25 23 30 30 H 1.48503 * 109.47470 * 330.00463 * 27 25 23 31 31 H 1.09003 * 109.46797 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47461 * 300.06770 * 1 2 3 33 33 H 1.09005 * 109.46745 * 60.06427 * 1 2 3 34 34 H 1.09003 * 109.73786 * 55.00635 * 4 2 1 35 35 H 1.08994 * 109.66526 * 294.43499 * 4 2 1 36 36 H 1.07998 * 119.42577 * 359.97438 * 9 8 6 37 37 H 1.08001 * 120.95577 * 0.02687 * 13 8 6 38 38 H 1.09003 * 109.46575 * 269.97272 * 17 16 11 39 39 H 1.08996 * 109.47467 * 29.97248 * 17 16 11 40 40 H 1.08997 * 109.47161 * 149.97609 * 17 16 11 41 41 H 1.09001 * 109.58195 * 173.65123 * 18 5 4 42 42 H 1.08997 * 109.58599 * 293.93652 * 18 5 4 43 43 H 1.08997 * 109.49586 * 65.31721 * 19 18 5 44 44 H 1.08999 * 109.49400 * 185.41015 * 19 18 5 45 45 H 0.96999 * 120.00125 * 25.05789 * 22 20 2 46 46 H 0.97003 * 119.99744 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0417 -0.7288 1.2519 5 7 3.5053 -0.8283 1.1690 6 6 4.2818 -0.3853 2.1776 7 8 3.7716 0.0496 3.1917 8 6 5.7530 -0.4283 2.0509 9 6 6.5218 0.7074 2.3380 10 7 7.8294 0.6882 2.2257 11 6 8.4825 -0.4017 1.8421 12 6 7.7862 -1.5873 1.5398 13 6 6.3915 -1.6008 1.6491 14 7 8.6978 -2.5217 1.1828 15 7 9.8829 -2.0238 1.2376 16 7 9.8099 -0.6851 1.6476 17 6 10.9356 0.2336 1.8343 18 6 4.1059 -1.4255 -0.0315 19 6 3.5708 -0.6939 -1.2666 20 6 2.0408 -0.7228 -1.2485 21 1 1.6973 -1.7571 -1.2355 22 7 1.5260 -0.0527 -2.4453 23 6 1.3946 -0.7493 -3.6169 24 1 1.6708 -1.7925 -3.6588 25 6 0.9063 -0.1145 -4.7508 26 7 0.7804 -0.7840 -5.8769 27 14 0.4279 1.6896 -4.6782 28 1 1.6053 2.5281 -5.0189 29 1 -0.6641 1.9517 -5.6497 30 1 -0.0377 2.0236 -3.3081 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5149 0.8893 33 1 -0.3633 0.5129 -0.8906 34 1 1.6095 -1.7284 1.2983 35 1 1.7635 -0.1664 2.1431 36 1 6.0296 1.6157 2.6527 37 1 5.8254 -2.4927 1.4245 38 1 11.1349 0.7586 0.9001 39 1 10.6894 0.9566 2.6120 40 1 11.8200 -0.3307 2.1298 41 1 5.1902 -1.3228 0.0128 42 1 3.8407 -2.4813 -0.0862 43 1 3.9155 0.3401 -1.2546 44 1 3.9335 -1.1884 -2.1677 45 1 1.2781 0.8843 -2.4078 46 1 0.4388 -0.3405 -6.6692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036121287.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:33 Heat of formation + Delta-G solvation = 118.557608 kcal Electronic energy + Delta-G solvation = -30112.422370 eV Core-core repulsion = 26040.206431 eV Total energy + Delta-G solvation = -4072.215939 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.73881 -40.60443 -38.81206 -37.71396 -35.38999 -34.87059 -33.32041 -32.30186 -31.62676 -31.08047 -29.91590 -28.16972 -26.73721 -25.75842 -25.10375 -23.98292 -22.63689 -21.95015 -21.62536 -20.57132 -19.67921 -18.80129 -17.82355 -17.62793 -17.22751 -16.85282 -16.44819 -16.05969 -15.18540 -14.94295 -14.58753 -14.42589 -14.16158 -14.08865 -13.78226 -13.63326 -13.49482 -13.41144 -13.30518 -12.98214 -12.79436 -12.53872 -12.50260 -12.11499 -12.02914 -11.86668 -11.53569 -11.28200 -11.09923 -10.96476 -10.77180 -10.59738 -10.42110 -10.28122 -9.86634 -9.84939 -9.64987 -9.62464 -9.26098 -8.97561 -8.69623 -7.32904 -5.82376 -3.18176 -0.20046 0.34327 1.37761 1.68959 2.37303 2.73872 3.12089 3.32672 3.35825 3.36610 3.41811 3.69204 3.82542 4.15135 4.20965 4.33228 4.53935 4.64352 4.77484 4.86817 4.92917 4.96222 5.00673 5.08689 5.15962 5.22872 5.35342 5.37564 5.43491 5.54504 5.59282 5.66184 5.76191 5.88292 5.94061 5.97510 6.02738 6.19498 6.22261 6.30566 6.41165 6.62665 6.69729 6.86891 7.07196 7.24091 7.41536 7.91102 7.92881 8.36609 9.14632 9.87338 10.06833 11.35834 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013436 B = 0.002834 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.485356 B = 9878.318074 C =10915.962581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 H 0.070 0.930 4 C 0.121 3.879 5 N -0.596 5.596 6 C 0.570 3.430 7 O -0.534 6.534 8 C -0.194 4.194 9 C 0.228 3.772 10 N -0.486 5.486 11 C 0.285 3.715 12 C -0.071 4.071 13 C 0.053 3.947 14 N -0.197 5.197 15 N 0.012 4.988 16 N -0.386 5.386 17 C 0.101 3.899 18 C 0.096 3.904 19 C -0.152 4.152 20 C 0.188 3.812 21 H 0.058 0.942 22 N -0.745 5.745 23 C -0.243 4.243 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.933 5.933 27 Si 0.882 3.118 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.276 1.276 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.184 0.816 37 H 0.161 0.839 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.361 0.639 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.061 1.553 18.915 24.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.134 4.134 3 H 0.088 0.912 4 C -0.001 4.001 5 N -0.327 5.327 6 C 0.356 3.644 7 O -0.411 6.411 8 C -0.202 4.202 9 C 0.055 3.945 10 N -0.199 5.199 11 C 0.042 3.958 12 C -0.197 4.197 13 C 0.022 3.978 14 N -0.077 5.077 15 N 0.031 4.969 16 N -0.182 5.182 17 C -0.040 4.040 18 C -0.027 4.027 19 C -0.193 4.193 20 C 0.078 3.922 21 H 0.076 0.924 22 N -0.386 5.386 23 C -0.373 4.373 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.580 5.580 27 Si 0.713 3.287 28 H -0.212 1.212 29 H -0.218 1.218 30 H -0.203 1.203 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.200 0.800 37 H 0.178 0.822 38 H 0.104 0.896 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.194 0.806 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.380 1.208 18.986 25.104 hybrid contribution -1.103 1.464 -0.244 1.849 sum 15.277 2.672 18.743 24.327 Atomic orbital electron populations 1.21677 0.93995 1.02226 1.01681 1.21879 0.96685 1.00037 0.94769 0.91174 1.21863 0.77572 1.01335 0.99311 1.48119 1.07377 1.59460 1.17761 1.17762 0.85181 0.78113 0.83314 1.90809 1.74467 1.47001 1.28859 1.20751 0.95593 0.95991 1.07903 1.22942 0.86336 0.97288 0.87945 1.66721 1.09895 1.25507 1.17825 1.19556 0.86431 0.92151 0.97690 1.20308 0.95536 0.92257 1.11607 1.21164 0.90120 0.98284 0.88239 1.74899 0.95671 1.24525 1.12570 1.81773 1.15027 0.87360 1.12785 1.49992 1.04375 1.11006 1.52838 1.22098 0.86178 0.91614 1.04079 1.22200 0.98032 0.97845 0.84631 1.22656 0.99979 1.00468 0.96166 1.20178 0.90381 0.96152 0.85447 0.92383 1.42763 1.78030 1.10201 1.07640 1.19041 1.36488 0.95808 0.85959 0.89185 1.24663 1.01294 0.97418 0.95631 1.69696 1.51963 1.35707 1.00666 0.86591 0.78224 0.86829 0.77074 1.21204 1.21788 1.20266 0.92496 0.93481 0.91346 0.90879 0.88929 0.79959 0.82179 0.89644 0.88348 0.88307 0.90230 0.90528 0.92200 0.89921 0.80610 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.03 37.16 0.34 -1.60 16 2 C -0.11 -1.60 2.47 -90.27 -0.22 -1.83 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.12 1.47 5.74 -3.48 -0.02 1.45 16 5 N -0.60 -7.05 2.97 -173.66 -0.52 -7.56 16 6 C 0.57 6.95 7.25 -12.38 -0.09 6.86 16 7 O -0.53 -7.92 16.47 5.31 0.09 -7.84 16 8 C -0.19 -2.03 5.03 -104.87 -0.53 -2.56 16 9 C 0.23 2.26 10.87 -17.09 -0.19 2.07 16 10 N -0.49 -5.20 10.37 -12.03 -0.12 -5.32 16 11 C 0.29 3.21 8.05 -155.92 -1.26 1.95 16 12 C -0.07 -0.83 7.27 -84.74 -0.62 -1.44 16 13 C 0.05 0.53 7.53 -38.52 -0.29 0.24 16 14 N -0.20 -2.45 12.40 32.17 0.40 -2.05 16 15 N 0.01 0.14 13.71 60.35 0.83 0.96 16 16 N -0.39 -3.83 4.10 -67.18 -0.28 -4.10 16 17 C 0.10 0.52 11.54 59.85 0.69 1.22 16 18 C 0.10 1.09 5.37 -3.71 -0.02 1.07 16 19 C -0.15 -2.27 5.66 -26.61 -0.15 -2.42 16 20 C 0.19 3.17 2.19 -67.89 -0.15 3.03 16 21 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 22 N -0.74 -16.11 4.21 -53.38 -0.22 -16.33 16 23 C -0.24 -6.42 10.41 -15.06 -0.16 -6.58 16 24 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 25 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 26 N -0.93 -28.46 13.97 55.49 0.78 -27.68 16 27 Si 0.88 21.41 27.73 -169.99 -4.71 16.69 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 30 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 1.13 7.36 -51.93 -0.38 0.75 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.15 7.02 -51.93 -0.36 0.78 16 36 H 0.18 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.16 1.31 7.07 -52.49 -0.37 0.94 16 38 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.82 4.54 -51.93 -0.24 0.58 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 45 H 0.36 7.85 5.37 -40.82 -0.22 7.63 16 46 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -33.40 375.85 -7.09 -40.49 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.23 Total: 5.54 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -2.75 Total: 1.53 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: 0.86 Total: -62.08 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.09 Total: -7.84 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.71 Total: 16.69 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.40 -7.09 -40.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036121287.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.046 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds