Wall clock time and date at job start Wed Apr 1 2020 03:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.52240 * 2 1 4 4 C 1.53197 * 109.50176 * 239.91865 * 2 1 3 5 5 N 1.46924 * 108.77488 * 185.41113 * 4 2 1 6 6 C 1.34778 * 120.63063 * 233.88246 * 5 4 2 7 7 O 1.21568 * 119.99651 * 355.89682 * 6 5 4 8 8 C 1.47722 * 120.00151 * 175.89733 * 6 5 4 9 9 C 1.40116 * 120.34895 * 50.71929 * 8 6 5 10 10 N 1.31263 * 121.14437 * 180.02562 * 9 8 6 11 11 C 1.32716 * 121.80120 * 0.02562 * 10 9 8 12 12 C 1.40783 * 120.68052 * 0.02562 * 11 10 9 13 13 C 1.39429 * 120.35112 * 230.45219 * 8 6 5 14 14 N 1.35336 * 107.75159 * 179.97438 * 12 11 10 15 15 N 1.28665 * 110.00124 * 0.02562 * 14 12 11 16 16 N 1.37121 * 133.40193 * 179.97438 * 11 10 9 17 17 C 1.46504 * 126.58995 * 0.02562 * 16 11 10 18 18 C 1.46929 * 118.73949 * 53.61187 * 5 4 2 19 19 C 1.53195 * 108.77448 * 306.38796 * 18 5 4 20 20 C 1.53042 * 109.31279 * 54.63416 * 19 18 5 21 21 H 1.09000 * 109.46235 * 178.62660 * 20 19 18 22 22 N 1.46502 * 109.45776 * 58.65357 * 20 19 18 23 23 C 1.36935 * 119.99801 * 85.00171 * 22 20 19 24 24 H 1.08001 * 120.00106 * 359.97438 * 23 22 20 25 25 C 1.38812 * 120.00226 * 179.97438 * 23 22 20 26 26 N 1.31625 * 119.99948 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 120.00250 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47198 * 90.00024 * 27 25 23 29 29 H 1.48501 * 109.47003 * 209.99978 * 27 25 23 30 30 H 1.48500 * 109.47018 * 329.99732 * 27 25 23 31 31 H 1.08997 * 109.47207 * 299.91462 * 1 2 3 32 32 H 1.08998 * 109.47325 * 59.92182 * 1 2 3 33 33 H 1.09008 * 109.46615 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.58199 * 65.62374 * 4 2 1 35 35 H 1.08998 * 109.58059 * 305.20072 * 4 2 1 36 36 H 1.07998 * 119.43216 * 359.97438 * 9 8 6 37 37 H 1.08000 * 120.94822 * 359.97438 * 13 8 6 38 38 H 1.09002 * 109.46864 * 90.00263 * 17 16 11 39 39 H 1.09000 * 109.46701 * 209.99665 * 17 16 11 40 40 H 1.08998 * 109.47160 * 329.99867 * 17 16 11 41 41 H 1.09000 * 109.58680 * 66.17219 * 18 5 4 42 42 H 1.08999 * 109.58784 * 186.60154 * 18 5 4 43 43 H 1.08998 * 109.49618 * 174.58606 * 19 18 5 44 44 H 1.08999 * 109.49751 * 294.65198 * 19 18 5 45 45 H 0.96996 * 120.00740 * 264.99693 * 22 20 19 46 46 H 0.97000 * 119.99891 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0414 -0.7238 -1.2496 5 7 3.5047 -0.8290 -1.1695 6 6 4.2814 -0.3809 -2.1756 7 8 3.7715 0.0476 -3.1926 8 6 5.7524 -0.4102 -2.0425 9 6 6.4043 -1.5865 -1.6493 10 7 7.7103 -1.6300 -1.5256 11 6 8.4712 -0.5693 -1.7649 12 6 7.8959 0.6523 -2.1635 13 6 6.5071 0.7307 -2.3123 14 7 8.8989 1.5448 -2.3334 15 7 10.0308 0.9886 -2.0784 16 7 9.8235 -0.3487 -1.7125 17 6 10.8538 -1.3234 -1.3452 18 6 4.1053 -1.4266 0.0309 19 6 3.5708 -0.6949 1.2661 20 6 2.0408 -0.7230 1.2484 21 1 1.6580 -0.2243 2.1388 22 7 1.5784 -2.1131 1.2308 23 6 1.4468 -2.8057 2.4047 24 1 1.6844 -2.3275 3.3434 25 6 1.0082 -4.1226 2.3881 26 7 0.7192 -4.7057 1.2440 27 14 0.8281 -5.0674 3.9896 28 1 -0.5442 -4.8779 4.5244 29 1 1.0678 -6.5118 3.7418 30 1 1.8176 -4.5634 4.9755 31 1 -0.3633 0.5125 0.8907 32 1 -0.3634 0.5150 -0.8893 33 1 -0.3633 -1.0278 -0.0005 34 1 1.7638 -0.1580 -2.1388 35 1 1.6053 -1.7216 -1.2979 36 1 5.8221 -2.4726 -1.4436 37 1 6.0326 1.6501 -2.6218 38 1 11.1935 -1.8471 -2.2388 39 1 11.6957 -0.8061 -0.8852 40 1 10.4387 -2.0419 -0.6386 41 1 3.8376 -2.4817 0.0869 42 1 5.1896 -1.3245 -0.0136 43 1 3.9334 -1.1896 2.1672 44 1 3.9163 0.3388 1.2545 45 1 1.3653 -2.5428 0.3877 46 1 0.4124 -5.6258 1.2325 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036121288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:36 Heat of formation + Delta-G solvation = 116.389934 kcal Electronic energy + Delta-G solvation = -30437.714385 eV Core-core repulsion = 26365.404449 eV Total energy + Delta-G solvation = -4072.309937 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.63615 -40.46852 -38.70259 -37.65771 -35.18777 -34.42823 -33.03441 -32.40636 -31.50630 -30.94896 -29.25156 -28.08020 -26.66788 -25.40722 -25.01646 -23.87193 -23.41711 -21.81128 -21.70394 -20.46543 -18.85852 -18.33339 -18.05547 -17.38718 -16.80642 -16.69236 -16.39103 -15.78089 -15.03456 -14.79772 -14.48097 -14.25860 -14.06550 -14.00007 -13.76747 -13.47565 -13.37036 -13.29068 -13.23602 -12.97708 -12.73215 -12.58367 -12.23796 -12.00007 -11.68602 -11.45733 -11.26034 -11.24941 -10.95812 -10.85595 -10.60252 -10.55725 -10.27320 -10.22224 -9.91189 -9.68861 -9.61233 -9.50688 -9.15005 -8.98101 -8.37347 -7.03819 -5.84510 -3.13170 -0.08775 0.47303 1.46069 1.77386 2.55674 2.92349 3.27051 3.38022 3.44071 3.45438 3.49523 3.80714 3.97653 4.23485 4.35538 4.46863 4.52780 4.71092 4.89477 5.01239 5.08021 5.11281 5.22952 5.29009 5.39105 5.43463 5.50400 5.52556 5.64380 5.73821 5.77054 5.85775 5.98469 5.99580 6.05033 6.15181 6.25374 6.31723 6.43760 6.52900 6.61055 6.68750 6.84805 6.92519 7.17697 7.49600 7.50245 7.64008 8.13411 8.34013 9.45948 10.01604 10.36768 11.37704 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.003003 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.860058 B = 9321.141817 C =10657.471766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 H 0.066 0.934 4 C 0.120 3.880 5 N -0.590 5.590 6 C 0.566 3.434 7 O -0.538 6.538 8 C -0.191 4.191 9 C 0.213 3.787 10 N -0.485 5.485 11 C 0.284 3.716 12 C -0.071 4.071 13 C 0.067 3.933 14 N -0.199 5.199 15 N 0.007 4.993 16 N -0.385 5.385 17 C 0.101 3.899 18 C 0.105 3.895 19 C -0.150 4.150 20 C 0.178 3.822 21 H 0.052 0.948 22 N -0.718 5.718 23 C -0.238 4.238 24 H 0.069 0.931 25 C -0.010 4.010 26 N -0.931 5.931 27 Si 0.903 3.097 28 H -0.291 1.291 29 H -0.292 1.292 30 H -0.283 1.283 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.185 0.815 37 H 0.159 0.841 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.049 0.951 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.526 8.207 -5.329 17.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.085 0.915 4 C -0.002 4.002 5 N -0.321 5.321 6 C 0.352 3.648 7 O -0.416 6.416 8 C -0.200 4.200 9 C 0.040 3.960 10 N -0.198 5.198 11 C 0.040 3.960 12 C -0.197 4.197 13 C 0.036 3.964 14 N -0.079 5.079 15 N 0.026 4.974 16 N -0.182 5.182 17 C -0.040 4.040 18 C -0.017 4.017 19 C -0.191 4.191 20 C 0.068 3.932 21 H 0.070 0.930 22 N -0.361 5.361 23 C -0.370 4.370 24 H 0.087 0.913 25 C -0.206 4.206 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.218 1.218 29 H -0.219 1.219 30 H -0.209 1.209 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.202 0.798 37 H 0.177 0.823 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.067 0.933 45 H 0.219 0.781 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.889 8.653 -5.631 18.948 hybrid contribution -0.966 -0.976 0.758 1.568 sum 14.922 7.677 -4.873 17.475 Atomic orbital electron populations 1.21666 0.94059 1.03274 1.00535 1.21720 0.96638 0.98889 0.95636 0.91526 1.21736 0.77652 1.02010 0.98819 1.48065 1.07381 1.58781 1.17852 1.17744 0.85131 0.78352 0.83538 1.90799 1.74521 1.47573 1.28689 1.20752 0.95643 0.95819 1.07776 1.23248 0.87921 0.97211 0.87623 1.66704 1.06038 1.27402 1.19698 1.19547 0.86351 0.92143 0.97910 1.20303 0.95334 0.92115 1.11971 1.20877 0.88644 0.98579 0.88254 1.74857 0.95322 1.24910 1.12810 1.81737 1.16496 0.86486 1.12684 1.49965 1.03840 1.10841 1.53526 1.22097 0.89419 0.89984 1.02458 1.22033 0.96399 0.99378 0.83891 1.22532 1.00582 0.98670 0.97318 1.20215 0.90639 0.87412 0.94932 0.93018 1.42475 1.79002 1.07666 1.06952 1.19203 1.37346 0.93856 0.86554 0.91274 1.24696 1.02189 0.97186 0.96573 1.69642 1.51586 1.13123 1.23620 0.86252 0.77781 0.79385 0.83099 1.21831 1.21873 1.20856 0.92762 0.93679 0.90966 0.89491 0.90150 0.79808 0.82342 0.89772 0.88367 0.88217 0.88926 0.91188 0.90600 0.93257 0.78071 0.93487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.05 37.15 0.34 -1.71 16 2 C -0.11 -1.63 2.67 -90.50 -0.24 -1.87 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C 0.12 1.82 5.41 -3.71 -0.02 1.80 16 5 N -0.59 -8.48 2.97 -173.92 -0.52 -8.99 16 6 C 0.57 8.18 7.25 -12.38 -0.09 8.09 16 7 O -0.54 -9.30 16.47 5.31 0.09 -9.21 16 8 C -0.19 -2.36 5.01 -104.87 -0.53 -2.88 16 9 C 0.21 2.44 8.52 -17.09 -0.15 2.29 16 10 N -0.48 -5.82 10.37 -12.03 -0.12 -5.95 16 11 C 0.28 3.50 8.05 -155.93 -1.26 2.25 16 12 C -0.07 -0.91 7.27 -84.74 -0.62 -1.53 16 13 C 0.07 0.80 9.93 -38.52 -0.38 0.42 16 14 N -0.20 -2.64 12.40 32.17 0.40 -2.24 16 15 N 0.01 0.09 13.71 60.35 0.83 0.91 16 16 N -0.39 -4.14 4.10 -67.18 -0.28 -4.41 16 17 C 0.10 0.61 11.54 59.85 0.69 1.30 16 18 C 0.11 1.48 5.13 -3.71 -0.02 1.46 16 19 C -0.15 -2.27 5.78 -26.61 -0.15 -2.43 16 20 C 0.18 3.07 2.53 -67.89 -0.17 2.90 16 21 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 22 N -0.72 -15.43 3.64 -53.38 -0.19 -15.63 16 23 C -0.24 -5.92 9.93 -15.06 -0.15 -6.07 16 24 H 0.07 1.70 7.83 -52.49 -0.41 1.28 16 25 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 26 N -0.93 -25.97 13.06 55.49 0.72 -25.24 16 27 Si 0.90 21.09 29.55 -169.99 -5.02 16.07 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.26 7.54 -51.92 -0.39 0.87 16 34 H 0.09 1.32 7.02 -51.93 -0.36 0.96 16 35 H 0.08 1.36 6.64 -51.93 -0.34 1.01 16 36 H 0.19 1.83 7.05 -52.49 -0.37 1.46 16 37 H 0.16 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.09 1.51 7.74 -51.93 -0.40 1.11 16 42 H 0.07 0.85 4.53 -51.93 -0.24 0.61 16 43 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.38 8.83 5.93 -40.82 -0.24 8.58 16 46 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 375.02 15.07 5.65 5.65 Total: -1.00 -30.59 375.02 -7.40 -37.99 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.12 Total: 7.40 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -2.84 Total: 3.65 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: 0.84 Total: -61.55 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.59 -7.40 -37.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036121288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.380 kcal (2) G-P(sol) polarization free energy of solvation -30.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds