Wall clock time and date at job start Wed Apr 1 2020 03:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.49580 * 2 1 4 4 C 1.53195 * 109.49504 * 239.94605 * 2 1 3 5 5 N 1.46918 * 108.77844 * 185.41398 * 4 2 1 6 6 C 1.34780 * 120.63293 * 233.60904 * 5 4 2 7 7 O 1.21569 * 119.99635 * 356.55162 * 6 5 4 8 8 C 1.47717 * 120.00012 * 176.55495 * 6 5 4 9 9 C 1.40126 * 120.35048 * 229.71832 * 8 6 5 10 10 N 1.31254 * 121.14945 * 179.76004 * 9 8 6 11 11 C 1.32717 * 121.79970 * 0.51381 * 10 9 8 12 12 C 1.40780 * 120.68366 * 359.75028 * 11 10 9 13 13 C 1.39429 * 120.35541 * 49.99378 * 8 6 5 14 14 N 1.35334 * 107.75706 * 180.02562 * 12 11 10 15 15 N 1.28665 * 110.00020 * 0.02562 * 14 12 11 16 16 N 1.37124 * 133.40400 * 179.77630 * 11 10 9 17 17 C 1.46506 * 126.59031 * 359.97438 * 16 11 10 18 18 C 1.46931 * 118.73911 * 53.60042 * 5 4 2 19 19 C 1.53189 * 108.77660 * 306.39935 * 18 5 4 20 20 C 1.53033 * 109.31565 * 54.63061 * 19 18 5 21 21 H 1.09002 * 109.45863 * 58.65481 * 20 19 18 22 22 N 1.46503 * 109.46196 * 178.61392 * 20 19 18 23 23 C 1.36933 * 120.00135 * 275.06798 * 22 20 19 24 24 H 1.08005 * 119.99731 * 0.02562 * 23 22 20 25 25 C 1.38811 * 120.00310 * 179.97438 * 23 22 20 26 26 N 1.31624 * 119.99489 * 0.02562 * 25 23 22 27 27 Si 1.86792 * 120.00321 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47306 * 0.02562 * 27 25 23 29 29 H 1.48504 * 109.47185 * 120.00076 * 27 25 23 30 30 H 1.48496 * 109.47442 * 240.00464 * 27 25 23 31 31 H 1.08991 * 109.47174 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46873 * 300.05895 * 1 2 3 33 33 H 1.08999 * 109.47430 * 60.05351 * 1 2 3 34 34 H 1.09005 * 109.58216 * 305.19786 * 4 2 1 35 35 H 1.08997 * 109.59150 * 65.61996 * 4 2 1 36 36 H 1.08002 * 119.42266 * 359.97438 * 9 8 6 37 37 H 1.07996 * 120.94866 * 359.95414 * 13 8 6 38 38 H 1.09001 * 109.46944 * 270.02467 * 17 16 11 39 39 H 1.08997 * 109.46823 * 30.02961 * 17 16 11 40 40 H 1.09002 * 109.46926 * 150.02188 * 17 16 11 41 41 H 1.09003 * 109.58738 * 186.60438 * 18 5 4 42 42 H 1.09006 * 109.58298 * 66.18227 * 18 5 4 43 43 H 1.09006 * 109.49754 * 294.68047 * 19 18 5 44 44 H 1.09001 * 109.49990 * 174.58739 * 19 18 5 45 45 H 0.97003 * 119.99438 * 95.06944 * 22 20 19 46 46 H 0.96999 * 119.99547 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7232 -1.2500 5 7 3.5045 -0.8287 -1.1701 6 6 4.2810 -0.3851 -2.1785 7 8 3.7707 0.0503 -3.1924 8 6 5.7521 -0.4280 -2.0517 9 6 6.5209 0.7080 -2.3381 10 7 7.8286 0.6887 -2.2263 11 6 8.4822 -0.4029 -1.8488 12 6 7.7861 -1.5889 -1.5473 13 6 6.3909 -1.6009 -1.6513 14 7 8.6982 -2.5249 -1.1959 15 7 9.8834 -2.0274 -1.2524 16 7 9.8101 -0.6882 -1.6603 17 6 10.9359 0.2303 -1.8483 18 6 4.1053 -1.4267 0.0300 19 6 3.5709 -0.6956 1.2655 20 6 2.0409 -0.7236 1.2480 21 1 1.6968 -1.7578 1.2345 22 7 1.5267 -0.0539 2.4452 23 6 1.3966 -0.7507 3.6169 24 1 1.6735 -1.7938 3.6584 25 6 0.9098 -0.1161 4.7514 26 7 0.5729 1.1553 4.7009 27 14 0.7331 -1.0664 6.3498 28 1 1.1772 -2.4684 6.1440 29 1 1.5709 -0.4312 7.3986 30 1 -0.6888 -1.0550 6.7779 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5147 0.8895 33 1 -0.3634 0.5130 -0.8904 34 1 1.6052 -1.7211 -1.2988 35 1 1.7637 -0.1571 -2.1390 36 1 6.0286 1.6162 -2.6531 37 1 5.8249 -2.4930 -1.4275 38 1 11.2909 0.1641 -2.8767 39 1 10.6114 1.2499 -1.6407 40 1 11.7429 -0.0399 -1.1672 41 1 5.1896 -1.3246 -0.0146 42 1 3.8375 -2.4819 0.0856 43 1 3.9160 0.3384 1.2540 44 1 3.9335 -1.1906 2.1664 45 1 1.2783 0.8830 2.4079 46 1 0.2324 1.5986 5.4936 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036121289.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:39 Heat of formation + Delta-G solvation = 114.319809 kcal Electronic energy + Delta-G solvation = -30043.747984 eV Core-core repulsion = 25971.348281 eV Total energy + Delta-G solvation = -4072.399704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.71462 -40.54832 -38.75927 -37.61704 -35.35459 -34.74298 -33.27537 -32.26107 -31.53975 -31.04602 -29.38914 -28.14327 -26.63214 -25.64083 -25.01873 -24.00117 -22.79364 -21.96168 -21.66189 -20.51988 -19.48621 -18.74305 -17.77939 -17.29106 -17.08739 -16.84320 -16.41002 -15.99957 -15.09363 -14.95157 -14.56026 -14.24773 -14.12735 -13.94225 -13.80174 -13.57126 -13.44727 -13.38999 -13.31157 -12.95982 -12.77607 -12.49024 -12.35848 -12.07401 -11.89633 -11.65738 -11.31250 -11.19611 -10.98830 -10.86363 -10.71434 -10.47169 -10.37386 -10.19889 -9.85323 -9.78132 -9.68401 -9.60762 -9.22821 -8.94501 -8.62294 -7.01038 -5.81839 -3.10632 -0.17539 0.37617 1.39917 1.71133 2.42100 2.79431 3.15114 3.39404 3.40305 3.45597 3.47579 3.71900 3.85315 4.18344 4.24300 4.37372 4.53902 4.65444 4.80306 4.94202 4.94949 5.03640 5.17583 5.19060 5.23508 5.29558 5.39332 5.46238 5.50840 5.62544 5.67210 5.72004 5.87358 5.98667 6.01529 6.07999 6.24128 6.29446 6.38033 6.43288 6.54641 6.74984 6.86485 6.98808 7.10538 7.30470 7.43554 7.65362 7.96768 8.36353 9.48081 10.04887 10.39537 11.40611 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012618 B = 0.002794 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.502759 B =10020.766899 C =11418.868844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.070 0.930 4 C 0.121 3.879 5 N -0.594 5.594 6 C 0.569 3.431 7 O -0.534 6.534 8 C -0.192 4.192 9 C 0.229 3.771 10 N -0.486 5.486 11 C 0.285 3.715 12 C -0.072 4.072 13 C 0.052 3.948 14 N -0.197 5.197 15 N 0.011 4.989 16 N -0.386 5.386 17 C 0.101 3.899 18 C 0.096 3.904 19 C -0.152 4.152 20 C 0.184 3.816 21 H 0.049 0.951 22 N -0.720 5.720 23 C -0.238 4.238 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.931 5.931 27 Si 0.904 3.096 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.184 0.816 37 H 0.160 0.840 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.346 -2.504 -16.009 22.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.089 0.911 4 C -0.002 4.002 5 N -0.326 5.326 6 C 0.356 3.644 7 O -0.412 6.412 8 C -0.201 4.201 9 C 0.056 3.944 10 N -0.199 5.199 11 C 0.042 3.958 12 C -0.197 4.197 13 C 0.021 3.979 14 N -0.077 5.077 15 N 0.030 4.970 16 N -0.182 5.182 17 C -0.040 4.040 18 C -0.027 4.027 19 C -0.193 4.193 20 C 0.073 3.927 21 H 0.067 0.933 22 N -0.360 5.360 23 C -0.369 4.369 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.736 3.264 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.201 0.799 37 H 0.178 0.822 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.218 0.782 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.660 -2.795 -16.131 23.358 hybrid contribution -0.907 -0.001 1.038 1.378 sum 15.754 -2.796 -15.093 21.996 Atomic orbital electron populations 1.21658 0.93939 1.01858 1.01939 1.21755 0.96715 1.00090 0.94471 0.91110 1.21801 0.77492 1.01261 0.99596 1.48108 1.07440 1.59303 1.17723 1.17757 0.85156 0.78157 0.83365 1.90810 1.74449 1.47016 1.28896 1.20768 0.95650 0.95969 1.07722 1.22961 0.86313 0.97318 0.87853 1.66719 1.09894 1.25478 1.17848 1.19555 0.86398 0.92143 0.97722 1.20305 0.95518 0.92218 1.11700 1.21155 0.90094 0.98291 0.88344 1.74885 0.95667 1.24581 1.12612 1.81761 1.15027 0.87385 1.12865 1.49985 1.04352 1.10958 1.52937 1.22097 0.86207 0.91797 1.03851 1.22203 0.97920 0.97714 0.84887 1.22701 1.00496 1.00425 0.95672 1.20198 0.90209 0.95797 0.86478 0.93297 1.42410 1.76418 1.11442 1.05754 1.19250 1.35879 0.94122 0.87660 0.91171 1.24731 1.02044 0.96019 0.98063 1.69669 1.49981 1.09494 1.28810 0.86161 0.77327 0.78898 0.84055 1.20562 1.21949 1.21893 0.92990 0.90694 0.93735 0.91128 0.89027 0.79898 0.82236 0.89759 0.88289 0.88286 0.90363 0.90759 0.92116 0.90445 0.78198 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.02 37.16 0.34 -1.72 16 2 C -0.11 -1.67 2.46 -90.50 -0.22 -1.89 16 3 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 4 C 0.12 1.56 5.71 -3.71 -0.02 1.54 16 5 N -0.59 -7.42 2.97 -173.92 -0.52 -7.94 16 6 C 0.57 7.27 7.25 -12.39 -0.09 7.18 16 7 O -0.53 -8.24 16.47 5.31 0.09 -8.15 16 8 C -0.19 -2.10 5.03 -104.87 -0.53 -2.63 16 9 C 0.23 2.36 10.87 -17.09 -0.19 2.18 16 10 N -0.49 -5.36 10.37 -12.03 -0.12 -5.48 16 11 C 0.29 3.28 8.05 -155.92 -1.26 2.03 16 12 C -0.07 -0.85 7.27 -84.74 -0.62 -1.46 16 13 C 0.05 0.54 7.53 -38.52 -0.29 0.25 16 14 N -0.20 -2.48 12.40 32.17 0.40 -2.09 16 15 N 0.01 0.13 13.71 60.35 0.83 0.96 16 16 N -0.39 -3.90 4.10 -67.17 -0.28 -4.18 16 17 C 0.10 0.54 11.54 59.85 0.69 1.23 16 18 C 0.10 1.14 5.38 -3.71 -0.02 1.12 16 19 C -0.15 -2.38 5.66 -26.62 -0.15 -2.53 16 20 C 0.18 3.25 2.19 -67.89 -0.15 3.10 16 21 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 22 N -0.72 -16.59 4.41 -53.39 -0.24 -16.83 16 23 C -0.24 -6.20 9.93 -15.06 -0.15 -6.35 16 24 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 25 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 26 N -0.93 -27.15 13.06 55.49 0.72 -26.43 16 27 Si 0.90 21.72 29.55 -169.99 -5.02 16.70 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 30 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.36 7.36 -51.93 -0.38 0.97 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.09 1.21 7.02 -51.93 -0.36 0.85 16 36 H 0.18 1.53 8.06 -52.49 -0.42 1.10 16 37 H 0.16 1.36 7.07 -52.49 -0.37 0.98 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.84 4.54 -51.93 -0.24 0.61 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 45 H 0.38 9.60 7.50 -40.82 -0.31 9.30 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 378.94 15.07 5.71 5.71 Total: -1.00 -32.30 378.94 -7.45 -39.74 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.28 Total: 6.38 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -2.75 Total: 1.60 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 0.80 Total: -61.98 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.09 Total: -8.15 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.30 -7.45 -39.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036121289.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.065 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds