Wall clock time and date at job start Wed Apr 1 2020 03:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.50104 * 2 1 4 4 C 1.53628 * 109.45743 * 120.20133 * 2 1 3 5 5 N 1.46922 * 108.54422 * 174.74001 * 4 2 1 6 6 C 1.34783 * 120.62631 * 126.37083 * 5 4 2 7 7 O 1.21542 * 120.00011 * 3.62878 * 6 5 4 8 8 C 1.47877 * 119.99490 * 183.62603 * 6 5 4 9 9 C 1.39447 * 121.11934 * 307.27648 * 8 6 5 10 10 C 1.38619 * 119.37748 * 180.25559 * 9 8 6 11 11 N 1.31589 * 121.63472 * 359.41727 * 10 9 8 12 12 C 1.32204 * 121.86237 * 0.59881 * 11 10 9 13 13 C 1.40866 * 121.11304 * 127.25528 * 8 6 5 14 14 N 1.34392 * 135.14464 * 0.02562 * 13 8 6 15 15 N 1.28690 * 109.15400 * 180.02562 * 14 13 8 16 16 N 1.28779 * 111.75757 * 0.02562 * 15 14 13 17 17 C 1.46498 * 125.87319 * 180.02562 * 16 15 14 18 18 C 1.46920 * 118.73942 * 306.09612 * 5 4 2 19 19 C 1.53190 * 108.77824 * 53.86076 * 18 5 4 20 20 C 1.53038 * 109.50110 * 239.92901 * 2 1 3 21 21 H 1.08999 * 109.45690 * 58.63330 * 20 2 1 22 22 N 1.46507 * 109.44739 * 298.66906 * 20 2 1 23 23 C 1.36938 * 119.99782 * 154.93952 * 22 20 2 24 24 H 1.08004 * 119.99822 * 359.97438 * 23 22 20 25 25 C 1.38810 * 119.99865 * 179.97438 * 23 22 20 26 26 N 1.31618 * 120.00230 * 179.97438 * 25 23 22 27 27 Si 1.86801 * 120.00151 * 0.02562 * 25 23 22 28 28 H 1.48502 * 109.47152 * 89.99414 * 27 25 23 29 29 H 1.48495 * 109.47323 * 210.00054 * 27 25 23 30 30 H 1.48508 * 109.46737 * 329.99832 * 27 25 23 31 31 H 1.08998 * 109.47655 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47343 * 300.07300 * 1 2 3 33 33 H 1.09007 * 109.46839 * 60.06811 * 1 2 3 34 34 H 1.09003 * 109.73990 * 55.00409 * 4 2 1 35 35 H 1.09005 * 109.66714 * 294.43902 * 4 2 1 36 36 H 1.08010 * 120.31265 * 359.97438 * 9 8 6 37 37 H 1.08002 * 119.18167 * 179.71921 * 10 9 8 38 38 H 1.08994 * 109.47701 * 89.97195 * 17 16 15 39 39 H 1.09006 * 109.47427 * 209.97451 * 17 16 15 40 40 H 1.09007 * 109.47070 * 329.97189 * 17 16 15 41 41 H 1.09006 * 109.58803 * 173.64925 * 18 5 4 42 42 H 1.09001 * 109.58618 * 294.07163 * 18 5 4 43 43 H 1.08999 * 109.49307 * 65.31608 * 19 18 5 44 44 H 1.08992 * 109.49845 * 185.41334 * 19 18 5 45 45 H 0.96996 * 119.99908 * 334.93051 * 22 20 2 46 46 H 0.97000 * 120.00368 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0417 -0.7287 1.2519 5 7 3.5052 -0.8282 1.1691 6 6 4.2817 -0.3852 2.1778 7 8 3.7716 0.0416 3.1951 8 6 5.7542 -0.4183 2.0465 9 6 6.4201 -1.5917 1.6940 10 6 7.8021 -1.5833 1.5865 11 7 8.5042 -0.4906 1.7980 12 6 7.9317 0.6524 2.1350 13 6 6.5314 0.7345 2.2730 14 7 6.2701 2.0072 2.6169 15 7 7.3763 2.6607 2.6889 16 7 8.3899 1.9153 2.4144 17 6 9.7914 2.3416 2.4045 18 6 4.1058 -1.4255 -0.0313 19 6 3.5708 -0.6941 -1.2664 20 6 2.0408 -0.7228 -1.2484 21 1 1.6577 -0.2244 -2.1389 22 7 1.5789 -2.1131 -1.2304 23 6 1.4475 -2.8061 -2.4042 24 1 1.6840 -2.3276 -3.3431 25 6 1.0104 -4.1234 -2.3871 26 7 0.8836 -4.7895 -3.5153 27 14 0.6007 -4.9507 -0.7631 28 1 -0.8330 -4.7315 -0.4438 29 1 0.8672 -6.4077 -0.8687 30 1 1.4421 -4.3702 0.3141 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5150 0.8893 33 1 -0.3633 0.5128 -0.8907 34 1 1.6095 -1.7283 1.2985 35 1 1.7635 -0.1662 2.1432 36 1 5.8647 -2.4998 1.5110 37 1 8.3150 -2.4950 1.3177 38 1 10.2226 2.1960 3.3949 39 1 10.3461 1.7499 1.6762 40 1 9.8485 3.3963 2.1348 41 1 5.1901 -1.3230 0.0130 42 1 3.8385 -2.4808 -0.0872 43 1 3.9155 0.3399 -1.2545 44 1 3.9334 -1.1886 -2.1675 45 1 1.3663 -2.5426 -0.3872 46 1 0.5777 -5.7099 -3.5034 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036150456.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:42 Heat of formation + Delta-G solvation = 126.624117 kcal Electronic energy + Delta-G solvation = -30904.145329 eV Core-core repulsion = 26832.279180 eV Total energy + Delta-G solvation = -4071.866149 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.65576 -40.52385 -39.09553 -37.83930 -35.35604 -34.57917 -33.22975 -32.26157 -31.54982 -31.14234 -29.81344 -28.34502 -26.91610 -25.93490 -24.79029 -24.04669 -23.22241 -22.32680 -21.73870 -19.98468 -19.20861 -18.53607 -17.91186 -17.79721 -17.35081 -17.19567 -16.17732 -15.65456 -15.32754 -14.87536 -14.70343 -14.52054 -14.13047 -13.89726 -13.76319 -13.63993 -13.51534 -13.35107 -13.30558 -12.77356 -12.63337 -12.54849 -12.36606 -11.90003 -11.83103 -11.64187 -11.50261 -11.29329 -11.04051 -10.99848 -10.68254 -10.59164 -10.36970 -10.25385 -9.90787 -9.68559 -9.59740 -9.47521 -9.19658 -8.99329 -8.46625 -7.33245 -5.82995 -3.18637 -0.13512 0.58859 1.56817 1.93381 2.53853 2.86390 3.23844 3.29301 3.31201 3.33560 3.40502 3.89367 3.97377 4.19548 4.27861 4.52126 4.57457 4.67139 4.85837 4.87880 4.97875 5.09366 5.14676 5.20618 5.26154 5.29900 5.45371 5.47959 5.56219 5.59538 5.70821 5.80684 5.82025 5.89284 6.01629 6.04153 6.17478 6.23988 6.35957 6.41122 6.49876 6.61914 6.71908 6.81534 7.17055 7.40341 7.90928 7.93330 8.07024 8.35962 9.14012 9.86495 10.06447 11.35370 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.016725 B = 0.003205 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.704728 B = 8735.533591 C = 9357.818491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 H 0.073 0.927 4 C 0.119 3.881 5 N -0.592 5.592 6 C 0.558 3.442 7 O -0.521 6.521 8 C 0.004 3.996 9 C -0.145 4.145 10 C 0.163 3.837 11 N -0.462 5.462 12 C 0.213 3.787 13 C -0.003 4.003 14 N -0.227 5.227 15 N -0.004 5.004 16 N -0.311 5.311 17 C 0.092 3.908 18 C 0.102 3.898 19 C -0.150 4.150 20 C 0.185 3.815 21 H 0.061 0.939 22 N -0.743 5.743 23 C -0.241 4.241 24 H 0.090 0.910 25 C 0.007 3.993 26 N -0.933 5.933 27 Si 0.878 3.122 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.163 0.837 37 H 0.184 0.816 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.052 0.948 44 H 0.081 0.919 45 H 0.360 0.640 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.024 10.033 10.538 22.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.132 4.132 3 H 0.091 0.909 4 C -0.003 4.003 5 N -0.324 5.324 6 C 0.344 3.656 7 O -0.397 6.397 8 C -0.012 4.012 9 C -0.169 4.169 10 C -0.009 4.009 11 N -0.176 5.176 12 C -0.029 4.029 13 C -0.132 4.132 14 N -0.102 5.102 15 N 0.014 4.986 16 N -0.113 5.113 17 C -0.049 4.049 18 C -0.020 4.020 19 C -0.191 4.191 20 C 0.075 3.925 21 H 0.079 0.921 22 N -0.387 5.387 23 C -0.370 4.370 24 H 0.108 0.892 25 C -0.189 4.189 26 N -0.581 5.581 27 Si 0.709 3.291 28 H -0.211 1.211 29 H -0.218 1.218 30 H -0.205 1.205 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.181 0.819 37 H 0.201 0.799 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.070 0.930 44 H 0.100 0.900 45 H 0.194 0.806 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 17.249 11.726 11.167 23.658 hybrid contribution -0.541 -1.756 0.768 1.992 sum 16.708 9.970 11.935 22.825 Atomic orbital electron populations 1.21672 0.94020 1.02808 1.01078 1.21849 0.96644 0.99395 0.95351 0.90854 1.21816 0.77814 1.01340 0.99310 1.48066 1.07218 1.59260 1.17867 1.17895 0.85286 0.78482 0.83907 1.90813 1.74016 1.46145 1.28743 1.19528 0.94410 0.91121 0.96182 1.22471 0.96192 0.98492 0.99710 1.22848 0.90484 0.94776 0.92773 1.66281 1.40946 0.96719 1.13609 1.19757 0.90011 0.88834 1.04295 1.20051 0.92541 0.94160 1.06487 1.75437 1.15722 1.02582 1.16423 1.78211 0.89151 1.18952 1.12242 1.46995 1.09532 1.04959 1.49797 1.22288 0.73994 1.03407 1.05199 1.22059 0.97256 0.98852 0.83860 1.22501 1.00096 0.99018 0.97453 1.20182 0.90831 0.86176 0.95311 0.92053 1.42846 1.80711 1.09332 1.05825 1.19049 1.37606 0.94125 0.86260 0.89177 1.24639 1.01537 0.96718 0.96017 1.69688 1.53047 1.10881 1.24450 0.86667 0.78568 0.79266 0.84609 1.21054 1.21769 1.20464 0.91666 0.93403 0.92230 0.91035 0.89172 0.81948 0.79931 0.89101 0.87856 0.87756 0.90535 0.89538 0.92972 0.90040 0.80596 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.05 37.15 0.34 -1.69 16 2 C -0.11 -1.72 2.68 -90.28 -0.24 -1.96 16 3 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.12 1.86 5.44 -3.49 -0.02 1.84 16 5 N -0.59 -9.04 2.97 -173.60 -0.51 -9.55 16 6 C 0.56 9.03 7.28 -12.31 -0.09 8.94 16 7 O -0.52 -10.08 16.51 5.33 0.09 -9.99 16 8 C 0.00 0.06 4.96 -104.51 -0.52 -0.46 16 9 C -0.15 -1.45 7.52 -38.99 -0.29 -1.74 16 10 C 0.16 1.37 11.14 -17.51 -0.20 1.17 16 11 N -0.46 -4.89 10.35 -12.38 -0.13 -5.01 16 12 C 0.21 2.65 8.08 -156.21 -1.26 1.39 16 13 C 0.00 -0.05 7.14 -84.72 -0.61 -0.66 16 14 N -0.23 -3.68 12.42 32.23 0.40 -3.28 16 15 N 0.00 -0.05 13.07 60.35 0.79 0.74 16 16 N -0.31 -3.40 3.80 -67.23 -0.26 -3.65 16 17 C 0.09 0.48 11.41 59.85 0.68 1.16 16 18 C 0.10 1.45 5.27 -3.72 -0.02 1.43 16 19 C -0.15 -2.32 5.78 -26.61 -0.15 -2.47 16 20 C 0.18 3.21 2.53 -67.89 -0.17 3.04 16 21 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 22 N -0.74 -15.55 3.44 -53.38 -0.18 -15.74 16 23 C -0.24 -6.18 10.41 -15.06 -0.16 -6.33 16 24 H 0.09 2.51 8.06 -52.48 -0.42 2.09 16 25 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 26 N -0.93 -27.91 13.97 55.49 0.78 -27.14 16 27 Si 0.88 20.86 27.74 -169.99 -4.71 16.14 16 28 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 30 H -0.28 -6.13 6.52 56.52 0.37 -5.76 16 31 H 0.06 1.07 7.54 -51.93 -0.39 0.68 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.86 8.14 -51.92 -0.42 0.43 16 34 H 0.07 1.17 6.63 -51.93 -0.34 0.82 16 35 H 0.09 1.43 7.02 -51.93 -0.36 1.06 16 36 H 0.16 1.30 7.31 -52.48 -0.38 0.92 16 37 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.92 4.67 -51.93 -0.24 0.67 16 42 H 0.09 1.35 7.74 -51.93 -0.40 0.95 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.36 7.54 3.78 -40.82 -0.15 7.39 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 371.54 15.07 5.60 5.60 Total: -1.00 -34.86 371.54 -7.05 -41.91 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -6.10 Total: 6.24 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -2.80 Total: 3.75 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: 0.88 Total: -63.64 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.71 Total: 16.14 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.86 -7.05 -41.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036150456.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.531 kcal (2) G-P(sol) polarization free energy of solvation -34.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds