Wall clock time and date at job start Wed Apr 1 2020 03:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.49612 * 2 1 4 4 C 1.53191 * 109.49945 * 239.93772 * 2 1 3 5 5 N 1.46926 * 108.77827 * 185.41394 * 4 2 1 6 6 C 1.34775 * 120.63037 * 233.58823 * 5 4 2 7 7 O 1.21544 * 120.00211 * 174.13741 * 6 5 4 8 8 C 1.47876 * 119.99857 * 354.13485 * 6 5 4 9 9 C 1.39451 * 121.11425 * 306.49186 * 8 6 5 10 10 C 1.38619 * 119.37605 * 180.02562 * 9 8 6 11 11 N 1.31588 * 121.63083 * 0.02944 * 10 9 8 12 12 C 1.32203 * 121.87067 * 359.97405 * 11 10 9 13 13 C 1.40872 * 121.11188 * 126.22004 * 8 6 5 14 14 N 1.34385 * 135.14883 * 359.96501 * 13 8 6 15 15 N 1.28694 * 109.15189 * 180.02562 * 14 13 8 16 16 N 1.28797 * 111.75524 * 359.36326 * 15 14 13 17 17 C 1.46496 * 125.86832 * 179.97438 * 16 15 14 18 18 C 1.46928 * 118.73867 * 53.60603 * 5 4 2 19 19 C 1.53191 * 108.77519 * 306.39672 * 18 5 4 20 20 C 1.53041 * 109.31594 * 54.63235 * 19 18 5 21 21 H 1.09001 * 109.45670 * 178.61859 * 20 19 18 22 22 N 1.46493 * 109.45681 * 58.65526 * 20 19 18 23 23 C 1.36944 * 119.99883 * 85.00389 * 22 20 19 24 24 H 1.08002 * 119.99926 * 359.97438 * 23 22 20 25 25 C 1.38811 * 119.99766 * 179.97438 * 23 22 20 26 26 N 1.31619 * 120.00461 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 119.99678 * 179.97438 * 25 23 22 28 28 H 1.48494 * 109.47436 * 90.00037 * 27 25 23 29 29 H 1.48504 * 109.46945 * 210.00353 * 27 25 23 30 30 H 1.48501 * 109.47024 * 329.99987 * 27 25 23 31 31 H 1.09008 * 109.46977 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47069 * 300.05895 * 1 2 3 33 33 H 1.08997 * 109.47335 * 60.06639 * 1 2 3 34 34 H 1.09000 * 109.58761 * 65.62007 * 4 2 1 35 35 H 1.09008 * 109.58183 * 305.20165 * 4 2 1 36 36 H 1.07996 * 120.31657 * 359.97438 * 9 8 6 37 37 H 1.08001 * 119.18336 * 180.02562 * 10 9 8 38 38 H 1.09001 * 109.47281 * 270.88893 * 17 16 15 39 39 H 1.09003 * 109.47301 * 30.89125 * 17 16 15 40 40 H 1.08998 * 109.47085 * 150.89342 * 17 16 15 41 41 H 1.08999 * 109.58652 * 186.60594 * 18 5 4 42 42 H 1.08996 * 109.58608 * 66.17762 * 18 5 4 43 43 H 1.09001 * 109.49795 * 174.58933 * 19 18 5 44 44 H 1.09009 * 109.49303 * 294.67974 * 19 18 5 45 45 H 0.96998 * 120.00825 * 264.99379 * 22 20 19 46 46 H 0.96992 * 120.00020 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5046 -0.8287 -1.1698 6 6 4.2811 -0.3857 -2.1784 7 8 5.4905 -0.3799 -2.0569 8 6 3.6617 0.0934 -3.4328 9 6 2.7562 -0.6989 -4.1378 10 6 2.1975 -0.2140 -5.3101 11 7 2.5005 0.9782 -5.7774 12 6 3.3515 1.7761 -5.1555 13 6 3.9624 1.3678 -3.9526 14 7 4.7510 2.3886 -3.5759 15 7 4.6490 3.3405 -4.4359 16 7 3.8453 3.0339 -5.3944 17 6 3.5037 3.8880 -6.5346 18 6 4.1053 -1.4267 0.0303 19 6 3.5708 -0.6954 1.2658 20 6 2.0408 -0.7235 1.2481 21 1 1.6582 -0.2251 2.1388 22 7 1.5784 -2.1134 1.2301 23 6 1.4468 -2.8065 2.4038 24 1 1.6844 -2.3285 3.3428 25 6 1.0082 -4.1234 2.3868 26 7 0.7192 -4.7061 1.2426 27 14 0.8294 -5.0690 3.9879 28 1 -0.5424 -4.8799 4.5240 29 1 1.0690 -6.5134 3.7390 30 1 1.8198 -4.5656 4.9733 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5147 0.8894 33 1 -0.3634 0.5128 -0.8905 34 1 1.7637 -0.1573 -2.1389 35 1 1.6052 -1.7212 -1.2985 36 1 2.4933 -1.6812 -3.7743 37 1 1.4963 -0.8301 -5.8534 38 1 2.6433 4.5070 -6.2799 39 1 4.3525 4.5275 -6.7767 40 1 3.2609 3.2650 -7.3954 41 1 5.1896 -1.3246 -0.0141 42 1 3.8376 -2.4818 0.0860 43 1 3.9334 -1.1904 2.1667 44 1 3.9160 0.3385 1.2542 45 1 1.3653 -2.5429 0.3869 46 1 0.4131 -5.6264 1.2307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036150459.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:48 Heat of formation + Delta-G solvation = 120.291327 kcal Electronic energy + Delta-G solvation = -30844.442893 eV Core-core repulsion = 26772.302133 eV Total energy + Delta-G solvation = -4072.140759 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.60419 -40.38447 -39.00194 -37.72736 -35.30985 -34.32989 -32.83548 -32.68654 -31.34382 -31.08060 -29.25661 -28.29511 -26.30380 -26.13613 -24.68120 -24.00081 -23.56962 -22.43682 -21.36122 -19.94306 -19.12388 -18.45599 -17.74590 -17.43503 -17.27184 -17.16260 -16.05505 -15.54844 -15.19233 -14.79188 -14.56284 -14.32433 -14.08569 -13.95892 -13.81566 -13.48433 -13.33279 -13.23713 -13.19073 -12.71727 -12.60092 -12.49277 -12.19183 -11.84870 -11.78968 -11.45707 -11.35938 -11.13437 -10.92012 -10.77925 -10.56773 -10.36097 -10.32616 -10.21241 -9.93587 -9.65125 -9.56640 -9.42435 -9.13083 -8.94382 -8.30661 -7.00115 -5.82060 -3.09837 -0.07761 0.64868 1.61155 1.98447 2.64789 2.98709 3.29203 3.37514 3.40707 3.47310 3.47790 3.94741 4.03059 4.27506 4.32978 4.55863 4.60338 4.72653 4.89700 4.94373 5.00511 5.18659 5.21683 5.30059 5.38220 5.55322 5.56902 5.60424 5.70395 5.75364 5.87355 5.88125 5.90267 6.04645 6.09206 6.17699 6.31561 6.37711 6.47300 6.55984 6.70847 6.75748 6.89258 6.95847 7.21945 7.55456 7.67601 7.95617 8.20205 8.36957 9.48889 10.04271 10.39699 11.40548 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.020818 B = 0.002837 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.636024 B = 9865.842021 C =10123.186502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 H 0.066 0.934 4 C 0.109 3.891 5 N -0.589 5.589 6 C 0.557 3.443 7 O -0.521 6.521 8 C 0.005 3.995 9 C -0.144 4.144 10 C 0.164 3.836 11 N -0.464 5.464 12 C 0.213 3.787 13 C -0.005 4.005 14 N -0.226 5.226 15 N -0.005 5.005 16 N -0.312 5.312 17 C 0.092 3.908 18 C 0.121 3.879 19 C -0.150 4.150 20 C 0.179 3.821 21 H 0.052 0.948 22 N -0.718 5.718 23 C -0.236 4.236 24 H 0.070 0.930 25 C -0.011 4.011 26 N -0.933 5.933 27 Si 0.904 3.096 28 H -0.291 1.291 29 H -0.292 1.292 30 H -0.283 1.283 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.163 0.837 37 H 0.183 0.817 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.383 0.617 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.487 13.469 -16.741 21.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 H 0.084 0.916 4 C -0.014 4.014 5 N -0.321 5.321 6 C 0.343 3.657 7 O -0.398 6.398 8 C -0.011 4.011 9 C -0.168 4.168 10 C -0.008 4.008 11 N -0.178 5.178 12 C -0.029 4.029 13 C -0.134 4.134 14 N -0.101 5.101 15 N 0.013 4.987 16 N -0.114 5.114 17 C -0.049 4.049 18 C 0.000 4.000 19 C -0.191 4.191 20 C 0.069 3.931 21 H 0.070 0.930 22 N -0.361 5.361 23 C -0.367 4.367 24 H 0.088 0.912 25 C -0.207 4.207 26 N -0.582 5.582 27 Si 0.735 3.265 28 H -0.219 1.219 29 H -0.219 1.219 30 H -0.208 1.208 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.181 0.819 37 H 0.200 0.800 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.068 0.932 45 H 0.218 0.782 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.744 14.918 -16.742 22.491 hybrid contribution -0.611 -1.636 0.785 1.915 sum 1.133 13.281 -15.957 20.792 Atomic orbital electron populations 1.21675 0.94043 1.03302 1.00467 1.21715 0.96544 0.98945 0.95768 0.91563 1.21965 0.78897 1.01949 0.98560 1.48054 1.07090 1.59047 1.17921 1.17891 0.86711 0.78289 0.82828 1.90812 1.13411 1.54746 1.80786 1.19611 0.94756 0.90698 0.96064 1.22454 0.95947 1.01941 0.96443 1.22842 0.96069 0.89448 0.92487 1.66277 1.13431 1.04808 1.33237 1.19758 0.99285 0.89312 0.94536 1.20094 1.00557 0.96403 0.96371 1.75436 1.18044 0.97601 1.19016 1.78218 1.06639 1.20227 0.93602 1.46993 1.32409 1.11315 1.20650 1.22274 1.03496 0.94448 0.84634 1.21661 0.97972 0.98077 0.82327 1.22529 0.99992 0.98965 0.97587 1.20211 0.90972 0.87280 0.94642 0.93012 1.42445 1.79027 1.07684 1.06896 1.19219 1.37000 0.93896 0.86574 0.91246 1.24681 1.02297 0.97137 0.96615 1.69629 1.51867 1.13073 1.23621 0.86238 0.77727 0.79376 0.83119 1.21858 1.21888 1.20844 0.90821 0.92646 0.93971 0.90876 0.89764 0.81933 0.79985 0.89092 0.87829 0.87918 0.90091 0.89540 0.90585 0.93210 0.78198 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.05 37.16 0.34 -1.66 16 2 C -0.11 -1.68 2.67 -90.50 -0.24 -1.92 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.11 1.57 4.60 -3.71 -0.02 1.55 16 5 N -0.59 -9.51 2.97 -173.87 -0.52 -10.03 16 6 C 0.56 9.47 7.24 -12.32 -0.09 9.38 16 7 O -0.52 -10.65 16.51 5.33 0.09 -10.57 16 8 C 0.01 0.08 4.65 -104.50 -0.49 -0.41 16 9 C -0.14 -1.48 7.89 -38.99 -0.31 -1.79 16 10 C 0.16 1.40 11.14 -17.52 -0.20 1.20 16 11 N -0.46 -4.97 10.35 -12.38 -0.13 -5.10 16 12 C 0.21 2.70 8.08 -156.21 -1.26 1.43 16 13 C -0.01 -0.08 7.15 -84.72 -0.61 -0.69 16 14 N -0.23 -3.76 12.42 32.23 0.40 -3.36 16 15 N -0.01 -0.07 13.07 60.35 0.79 0.72 16 16 N -0.31 -3.48 3.80 -67.23 -0.26 -3.73 16 17 C 0.09 0.49 11.41 59.84 0.68 1.18 16 18 C 0.12 2.13 6.18 -3.71 -0.02 2.10 16 19 C -0.15 -2.62 5.78 -26.61 -0.15 -2.78 16 20 C 0.18 3.27 2.53 -67.89 -0.17 3.10 16 21 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 22 N -0.72 -15.88 3.64 -53.39 -0.19 -16.07 16 23 C -0.24 -6.02 9.93 -15.06 -0.15 -6.17 16 24 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 25 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 26 N -0.93 -26.23 13.06 55.49 0.72 -25.50 16 27 Si 0.90 21.52 29.55 -169.99 -5.02 16.50 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 30 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 31 H 0.07 1.24 7.53 -51.92 -0.39 0.85 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.91 5.38 -51.93 -0.28 0.63 16 35 H 0.08 1.29 6.64 -51.92 -0.34 0.94 16 36 H 0.16 1.36 7.79 -52.49 -0.41 0.96 16 37 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 1.46 7.00 -51.93 -0.36 1.09 16 42 H 0.09 1.69 7.74 -51.93 -0.40 1.28 16 43 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.05 0.83 8.14 -51.92 -0.42 0.40 16 45 H 0.38 8.87 5.93 -40.82 -0.24 8.62 16 46 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 375.92 15.07 5.67 5.67 Total: -1.00 -33.75 375.92 -7.43 -41.18 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.20 Total: 6.16 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -2.78 Total: 4.14 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: 0.82 Total: -63.07 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.75 -7.43 -41.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036150459.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.472 kcal (2) G-P(sol) polarization free energy of solvation -33.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds