Wall clock time and date at job start Wed Apr 1 2020 03:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.49446 * 2 1 4 4 C 1.53190 * 109.49675 * 239.93664 * 2 1 3 5 5 N 1.46926 * 108.77662 * 185.37623 * 4 2 1 6 6 C 1.34768 * 120.63299 * 233.58818 * 5 4 2 7 7 O 1.21280 * 120.00331 * 0.02562 * 6 5 4 8 8 C 1.50709 * 119.99833 * 180.02562 * 6 5 4 9 9 C 1.50697 * 109.46820 * 180.02562 * 8 6 5 10 10 N 1.32618 * 125.18157 * 269.99659 * 9 8 6 11 11 C 1.32833 * 109.75734 * 180.02562 * 10 9 8 12 12 N 1.33817 * 132.50595 * 180.02562 * 11 10 9 13 13 C 1.31343 * 120.86621 * 179.97438 * 12 11 10 14 14 C 1.40045 * 120.31270 * 0.02562 * 13 12 11 15 15 C 1.35777 * 119.24034 * 359.97438 * 14 13 12 16 16 N 1.35981 * 119.02075 * 359.97438 * 15 14 13 17 17 N 1.31179 * 125.18984 * 90.00024 * 9 8 6 18 18 C 1.46927 * 118.73577 * 53.86502 * 5 4 2 19 19 C 1.53631 * 108.54128 * 306.09656 * 18 5 4 20 20 C 1.53029 * 109.24388 * 54.85313 * 19 18 5 21 21 H 1.09007 * 109.45049 * 178.50033 * 20 19 18 22 22 N 1.46495 * 109.46239 * 58.53554 * 20 19 18 23 23 C 1.36937 * 120.00354 * 84.92912 * 22 20 19 24 24 H 1.08007 * 119.99850 * 0.02562 * 23 22 20 25 25 C 1.38814 * 120.00242 * 180.02562 * 23 22 20 26 26 N 1.31619 * 119.99940 * 179.97438 * 25 23 22 27 27 Si 1.86797 * 120.00080 * 359.97438 * 25 23 22 28 28 H 1.48500 * 109.46894 * 90.00039 * 27 25 23 29 29 H 1.48499 * 109.47304 * 210.00118 * 27 25 23 30 30 H 1.48496 * 109.47071 * 330.00466 * 27 25 23 31 31 H 1.09003 * 109.47303 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47437 * 300.05666 * 1 2 3 33 33 H 1.08996 * 109.47660 * 60.06339 * 1 2 3 34 34 H 1.09002 * 109.58448 * 65.59608 * 4 2 1 35 35 H 1.09000 * 109.58787 * 305.17196 * 4 2 1 36 36 H 1.08994 * 109.47273 * 60.00105 * 8 6 5 37 37 H 1.09003 * 109.46935 * 299.99715 * 8 6 5 38 38 H 1.08001 * 119.84689 * 179.97438 * 13 12 11 39 39 H 1.08000 * 120.38198 * 179.70669 * 14 13 12 40 40 H 1.08005 * 120.49006 * 179.97438 * 15 14 13 41 41 H 1.08998 * 109.58943 * 65.92025 * 18 5 4 42 42 H 1.08996 * 109.59093 * 186.35146 * 18 5 4 43 43 H 1.09001 * 109.62912 * 294.86144 * 19 18 5 44 44 H 1.08996 * 109.43145 * 174.72915 * 19 18 5 45 45 H 0.97003 * 119.99910 * 264.93438 * 22 20 19 46 46 H 0.97001 * 119.99730 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5047 -0.8280 -1.1703 6 6 4.2806 -0.3848 -2.1791 7 8 3.7721 0.1065 -3.1645 8 6 5.7802 -0.4997 -2.0828 9 6 6.4084 0.0647 -3.3309 10 7 6.6819 -0.6273 -4.4287 11 6 7.2309 0.1709 -5.3375 12 7 7.6739 -0.0456 -6.5815 13 6 8.1864 0.9317 -7.2939 14 6 8.2784 2.2229 -6.7596 15 6 7.8315 2.4521 -5.4981 16 7 7.3052 1.4195 -4.7869 17 7 6.7681 1.3152 -3.4972 18 6 4.1057 -1.4306 0.0273 19 6 3.5714 -0.6942 1.2653 20 6 2.0415 -0.7230 1.2481 21 1 1.6590 -0.2246 2.1388 22 7 1.5797 -2.1132 1.2305 23 6 1.4501 -2.8066 2.4042 24 1 1.6880 -2.3285 3.3430 25 6 1.0130 -4.1240 2.3874 26 7 0.8889 -4.7906 3.5155 27 14 0.6007 -4.9507 0.7639 28 1 1.8164 -5.6080 0.2205 29 1 -0.4574 -5.9696 0.9818 30 1 0.1156 -3.9318 -0.2013 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5147 0.8895 33 1 -0.3634 0.5128 -0.8905 34 1 1.7632 -0.1575 -2.1389 35 1 1.6056 -1.7214 -1.2983 36 1 6.0583 -1.5483 -1.9778 37 1 6.1323 0.0583 -1.2151 38 1 8.5393 0.7384 -8.2961 39 1 8.7040 3.0263 -7.3426 40 1 7.8930 3.4400 -5.0660 41 1 3.8350 -2.4850 0.0810 42 1 5.1902 -1.3315 -0.0187 43 1 3.9160 0.3398 1.2534 44 1 3.9346 -1.1888 2.1662 45 1 1.3657 -2.5425 0.3874 46 1 0.5831 -5.7110 3.5038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036303101.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:54 Heat of formation + Delta-G solvation = 125.640701 kcal Electronic energy + Delta-G solvation = -29958.017803 eV Core-core repulsion = 25886.109009 eV Total energy + Delta-G solvation = -4071.908793 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.22418 -40.26440 -39.16633 -37.81734 -34.93976 -34.45859 -33.15245 -32.48738 -31.51182 -31.03621 -29.87884 -29.68557 -26.39602 -25.31111 -24.88851 -24.06417 -23.17854 -21.82606 -21.63873 -19.70410 -18.78791 -18.46953 -18.23586 -17.90192 -17.28277 -16.72489 -16.55818 -15.78114 -15.46033 -14.98140 -14.73717 -14.47904 -13.94954 -13.88793 -13.79324 -13.61052 -13.55202 -13.24518 -13.00167 -12.90132 -12.58915 -12.38024 -12.34223 -12.21379 -11.70270 -11.59720 -11.43280 -11.01363 -10.96084 -10.63474 -10.53033 -10.46164 -10.38065 -10.21939 -10.10624 -9.88100 -9.64714 -9.56234 -9.15786 -8.96685 -8.39892 -7.29788 -5.79909 -3.15317 0.00714 0.33309 1.52312 2.13759 2.64927 2.83440 3.02979 3.21162 3.34814 3.37854 3.44603 3.55278 3.83132 4.11613 4.36744 4.52126 4.56041 4.58525 4.83720 5.03091 5.05998 5.11988 5.14560 5.22148 5.33664 5.39124 5.47548 5.59244 5.61656 5.72889 5.76441 5.86421 5.87632 5.90574 5.92561 6.06904 6.20220 6.27617 6.37014 6.45952 6.54365 6.64898 6.74474 6.86199 7.04004 7.51505 7.62208 7.96313 8.20031 8.39200 9.17357 9.90084 10.09796 11.38398 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.021071 B = 0.002406 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.501732 B =11634.926187 C =12010.073491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 H 0.071 0.929 4 C 0.119 3.881 5 N -0.601 5.601 6 C 0.525 3.475 7 O -0.543 6.543 8 C -0.054 4.054 9 C 0.304 3.696 10 N -0.510 5.510 11 C 0.441 3.559 12 N -0.453 5.453 13 C 0.204 3.796 14 C -0.227 4.227 15 C 0.174 3.826 16 N -0.326 5.326 17 N -0.321 5.321 18 C 0.108 3.892 19 C -0.150 4.150 20 C 0.184 3.816 21 H 0.061 0.939 22 N -0.744 5.744 23 C -0.241 4.241 24 H 0.091 0.909 25 C 0.007 3.993 26 N -0.933 5.933 27 Si 0.877 3.123 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.190 0.810 39 H 0.174 0.826 40 H 0.182 0.818 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.081 0.919 45 H 0.360 0.640 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.363 17.048 -18.535 30.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 H 0.090 0.910 4 C -0.003 4.003 5 N -0.334 5.334 6 C 0.310 3.690 7 O -0.420 6.420 8 C -0.096 4.096 9 C 0.023 3.977 10 N -0.241 5.241 11 C 0.081 3.919 12 N -0.167 5.167 13 C 0.017 3.983 14 C -0.253 4.253 15 C 0.036 3.964 16 N -0.105 5.105 17 N -0.152 5.152 18 C -0.014 4.014 19 C -0.190 4.190 20 C 0.074 3.926 21 H 0.079 0.921 22 N -0.387 5.387 23 C -0.371 4.371 24 H 0.108 0.892 25 C -0.189 4.189 26 N -0.581 5.581 27 Si 0.708 3.292 28 H -0.211 1.211 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.207 0.793 39 H 0.192 0.808 40 H 0.200 0.800 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.072 0.928 44 H 0.100 0.900 45 H 0.194 0.806 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.678 16.374 -18.304 29.137 hybrid contribution -0.107 0.112 -0.973 0.985 sum 15.572 16.486 -19.277 29.764 Atomic orbital electron populations 1.21678 0.94195 1.02866 1.00891 1.21754 0.96533 0.99294 0.95540 0.91025 1.21653 0.78429 1.01167 0.99033 1.48082 1.07110 1.59902 1.18271 1.19926 0.87939 0.78205 0.82884 1.90708 1.75180 1.45096 1.31051 1.20120 0.92944 1.04474 0.92060 1.23560 0.92898 0.87017 0.94262 1.70704 1.22788 1.30266 1.00374 1.22730 0.96163 0.80698 0.92314 1.68006 1.13372 1.33860 1.01461 1.23587 0.88103 0.87359 0.99226 1.21948 1.07336 1.00714 0.95267 1.22176 0.90097 0.93195 0.90909 1.48790 1.38739 1.10399 1.12617 1.78542 1.24622 1.19257 0.92788 1.21934 0.96766 0.98879 0.83825 1.22579 0.99971 0.99002 0.97495 1.20183 0.90996 0.86170 0.95224 0.92146 1.42849 1.80601 1.09402 1.05893 1.19047 1.37665 0.94022 0.86320 0.89154 1.24637 1.01512 0.96737 0.96017 1.69690 1.53108 1.10816 1.24443 0.86675 0.78249 0.79591 0.84699 1.21058 1.21755 1.20398 0.91612 0.92292 0.93588 0.89514 0.91371 0.85233 0.85665 0.79286 0.80820 0.80042 0.89793 0.90675 0.92753 0.90043 0.80575 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.06 37.16 0.34 -1.76 16 2 C -0.11 -1.71 2.67 -90.50 -0.24 -1.95 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.12 1.93 5.42 -3.71 -0.02 1.91 16 5 N -0.60 -9.17 2.97 -172.50 -0.51 -9.68 16 6 C 0.52 8.31 7.69 -10.98 -0.08 8.22 16 7 O -0.54 -10.60 15.45 5.56 0.09 -10.51 16 8 C -0.05 -0.68 4.67 -29.03 -0.14 -0.82 16 9 C 0.30 4.61 6.59 -157.01 -1.03 3.58 16 10 N -0.51 -8.47 11.25 -11.80 -0.13 -8.60 16 11 C 0.44 6.31 8.99 -323.13 -2.91 3.40 16 12 N -0.45 -5.18 10.48 -13.82 -0.14 -5.33 16 13 C 0.20 1.11 11.27 -17.08 -0.19 0.92 16 14 C -0.23 -0.79 10.06 -39.79 -0.40 -1.19 16 15 C 0.17 1.13 11.32 -16.59 -0.19 0.95 16 16 N -0.33 -3.99 3.91 -13.84 -0.05 -4.05 16 17 N -0.32 -4.65 12.78 32.39 0.41 -4.24 16 18 C 0.11 1.53 6.11 -3.48 -0.02 1.51 16 19 C -0.15 -2.25 5.79 -26.39 -0.15 -2.40 16 20 C 0.18 3.21 2.53 -67.90 -0.17 3.04 16 21 H 0.06 1.11 8.08 -51.92 -0.42 0.69 16 22 N -0.74 -15.96 3.44 -53.39 -0.18 -16.15 16 23 C -0.24 -6.31 10.41 -15.06 -0.16 -6.46 16 24 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 25 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 26 N -0.93 -28.42 13.97 55.49 0.78 -27.64 16 27 Si 0.88 21.60 27.74 -169.99 -4.71 16.88 16 28 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 30 H -0.28 -6.45 6.52 56.52 0.37 -6.09 16 31 H 0.06 1.13 7.54 -51.93 -0.39 0.74 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 1.43 7.01 -51.93 -0.36 1.07 16 35 H 0.07 1.18 6.64 -51.93 -0.34 0.84 16 36 H 0.13 1.40 7.93 -51.93 -0.41 0.99 16 37 H 0.13 1.22 7.70 -51.93 -0.40 0.82 16 38 H 0.19 0.16 8.06 -52.49 -0.42 -0.26 16 39 H 0.17 -0.19 8.06 -52.49 -0.42 -0.61 16 40 H 0.18 0.55 8.06 -52.48 -0.42 0.13 16 41 H 0.08 1.38 7.73 -51.93 -0.40 0.97 16 42 H 0.07 0.81 5.93 -51.93 -0.31 0.50 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.36 7.84 3.79 -40.82 -0.15 7.68 16 46 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -38.43 374.39 -10.46 -48.89 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.17 Total: 5.74 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: -5.46 Total: 9.04 kcal Atomic # 7 Polarization: -75.85 SS G_CDS: 0.16 Total: -75.69 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.88 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.43 -10.46 -48.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036303101.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.531 kcal (2) G-P(sol) polarization free energy of solvation -38.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds